Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002768

Physical Location & Seq

Genomic Coordinates Forward (+)

4421349 .. 4422120

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031364

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCTTTGGGGAAGAAGTGCCGGAGTAGTTTACTGAAACGCAGCGTTTCGTTCGGAGGAGGAGGAGAAGGGTTTGTTCGAGCTTTGGGGAGGAAGAGGATAGAAATCCCGGATGCGGAGGATTCGTATTCGGGTTTGAGCCCCAAGACTCCATTGAAGAAGCAGAGGAGTGAGTGTTTCGCTTTCGATTTCGATTTCGAGGGTGAAAGGTCTAAACTTGAAGCTATGCCTCAGGAGATTCTGATTAAGATTCTGTGTGGAGTTGAGCATGAGGATCTTAAACAGCTTTTCCATGTATCTAAGGCGATTAGAGAAGCGACTCTTATAGCAAAACAGTTGCATTTTGCTTACAGCACGCCTAGAAAGATTCGAGCTTTTCGAACCAAGATTGATTTTTCGGAGTCAAATGACGATTTGGATGAGATTGAAGCTCCGAATGCTCCGAGGCAGCAGAGGCTGCATAGGGCGCTGCCAAGCCGAAAAAAGCTTGAAGAGATATCGGTTAACTTATTGGATTCATTGGAGGAAGGAATGAGAAGAGGGCTCTTCATGGATGGAGATGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009961 GO:0010033 GO:0010243 GO:0014070 GO:0033993 GO:0042221 GO:0042493 GO:0043200 GO:0043207 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

190

Amino Acids

21.47

Weight (kDa)

7.72

Isoelectric Point (pI)

62.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61340 AT1G61340 AT4G05010 AT4G21510 AT4G21510
fragaria_vesca	FvH4_3g04020 FvH4_3g04020
malus_domestica	MD05G1112900.v1.1 MD05G1299400.v1.1 MD05G1325400.v1.1 MD10G1303400.v1.1
prunus_persica	Prupe.4G036800_v2.0.a1
pyrus_communis	pycom05g29940 pycom10g25590
rosa_chinensis	RchiOBHm_Chr2g0138281 RchiOBHm_Chr5g0006321
rosa_laevigata	RLG00000019731 RLG00000031025 RLG00000031364
rosa_multiflora	Rmu_sc0002475.1_g000024 Rmu_sc0003884.1_g000003 Rmu_sc0039919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069670 Rroxscaffold_1G00073480 Rroxscaffold_2G00106360
rosa_rugosa	Rorug02G0350800 Rorug04G0421100
rosa_samantha	Rh2AG398500 Rh2BG409300 Rh2CG383700 Rh2CG385300 Rh2DG418800 Rh5AG049000 Rh5BG021300 Rh5BG048200 Rh5CG056400 Rh5DG047300
rosa_wichuraiana	Rw2G032470 Rw5G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	4 cut(s)	157, 221, 428, 491
AluBI	AGCT	6 cut(s)	83, 224, 286, 374, 431, 487
AluI	AGCT	6 cut(s)	83, 224, 286, 374, 431, 487
AlwI	GGATC	1 cut(s)	282
AlwNI	CAGNNNCTG	1 cut(s)	457
ApeKI	GCWGC	4 cut(s)	42, 448, 457, 469
AspLEI	GCGC	1 cut(s)	469
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	215
AsuII	TTCGAA	1 cut(s)	379
AxyI	CCTNAGG	1 cut(s)	231
BanII	GRGCYC	2 cut(s)	143, 546
BbvI	GCAGC	4 cut(s)	54, 444, 456, 460
BccI	CCATC	1 cut(s)	548
BcnI	CCSGG	1 cut(s)	110
BfaI	CTAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	470
BisI	GCNGC	4 cut(s)	43, 449, 458, 470
BlsI	GCNGC	4 cut(s)	44, 450, 459, 471
Bme1390I	CCNGG	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	103
Bpu14I	TTCGAA	1 cut(s)	379
BpuMI	CCSGG	1 cut(s)	110
BsaBI	GATNNNNATC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	443
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 160, 190
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse21I	CCTNAGG	1 cut(s)	231
Bse8I	GATNNNNATC	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	443
BseGI	GGATG	3 cut(s)	118, 424, 559
BseJI	GATNNNNATC	1 cut(s)	104
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	245
BseRI	GAGGAG	4 cut(s)	72, 75, 78, 181
BseXI	GCAGC	4 cut(s)	54, 444, 456, 460
BsiSI	CCGG	2 cut(s)	22, 110
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	442
Bsp119I	TTCGAA	1 cut(s)	379
Bsp1286I	GDGCHC	2 cut(s)	143, 546
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	244
BspPI	GGATC	1 cut(s)	282
BspQI	GCTCTTC	1 cut(s)	551
BspT104I	TTCGAA	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	1 cut(s)	274
Bst4CI	ACNGT	1 cut(s)	336
Bst6I	CTCTTC	4 cut(s)	89, 486, 532, 551
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstBI	TTCGAA	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	2 cut(s)	231, 300
BstF5I	GGATG	3 cut(s)	118, 424, 559
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	4 cut(s)	437, 454, 457, 466
BstSCI	CCNGG	1 cut(s)	108
BstV1I	GCAGC	4 cut(s)	54, 444, 456, 460
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
Bsu36I	CCTNAGG	1 cut(s)	231
BtsCI	GGATG	3 cut(s)	118, 424, 559
Cac8I	GCNNGC	1 cut(s)	356
CaiI	CAGNNNCTG	1 cut(s)	457
CfoI	GCGC	1 cut(s)	469
CviAII	CATG	3 cut(s)	269, 293, 550
DdeI	CTNAG	2 cut(s)	231, 300
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
Eam1104I	CTCTTC	4 cut(s)	89, 486, 532, 551
EarI	CTCTTC	4 cut(s)	89, 486, 532, 551
Eco24I	GRGCYC	2 cut(s)	143, 546
Eco32I	GATATC	1 cut(s)	498
Eco81I	CCTNAGG	1 cut(s)	231
EcoRV	GATATC	1 cut(s)	498
EcoT38I	GRGCYC	2 cut(s)	143, 546
FaeI	CATG	3 cut(s)	272, 296, 553
FaiI	YATR	6 cut(s)	227, 270, 294, 326, 462, 551
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FatI	CATG	3 cut(s)	268, 292, 549
Fnu4HI	GCNGC	4 cut(s)	43, 449, 458, 470
FokI	GGATG	3 cut(s)	125, 431, 566
FriOI	GRGCYC	2 cut(s)	143, 546
Fsp4HI	GCNGC	4 cut(s)	43, 449, 458, 470
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	4 cut(s)	43, 449, 458, 470
HaeII	RGCGCY	1 cut(s)	470
HapII	CCGG	2 cut(s)	22, 110
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	3 cut(s)	272, 296, 553
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	8 cut(s)	122, 148, 238, 250, 319, 367, 401, 515
HpaI	GTTAAC	1 cut(s)	505
HpaII	CCGG	2 cut(s)	22, 110
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	32, 505
Hpy188I	TCNGA	5 cut(s)	56, 243, 400, 435, 444
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	2 cut(s)	32, 505
HpyAV	CCTTC	2 cut(s)	62, 521
HpyCH4III	ACNGT	1 cut(s)	336
HpyCH4V	TGCA	2 cut(s)	340, 460
HpyF10VI	GCNNNNNNNGC	4 cut(s)	437, 454, 457, 466
HpyF3I	CTNAG	2 cut(s)	231, 300
Hsp92II	CATG	3 cut(s)	272, 296, 553
HspAI	GCGC	1 cut(s)	467
KspAI	GTTAAC	1 cut(s)	505
Kzo9I	GATC	1 cut(s)	274
LguI	GCTCTTC	1 cut(s)	551
LmnI	GCTCC	2 cut(s)	436, 445
LpnPI	CCDG	3 cut(s)	35, 123, 218
Lsp1109I	GCAGC	4 cut(s)	54, 444, 456, 460
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	360
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	6 cut(s)	25, 106, 169, 503, 538, 549
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	2 cut(s)	143, 546
MlyI	GAGTC	3 cut(s)	142, 313, 410
MseI	TTAA	3 cut(s)	246, 279, 504
MspI	CCGG	2 cut(s)	22, 110
MspR9I	CCNGG	1 cut(s)	110
Mva1269I	GAATGC	1 cut(s)	442
MwoI	GCNNNNNNNGC	4 cut(s)	437, 454, 457, 466
NciI	CCSGG	1 cut(s)	110
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	3 cut(s)	272, 296, 553
NspV	TTCGAA	1 cut(s)	379
PciSI	GCTCTTC	1 cut(s)	551
PcsI	WCGNNNNNNNCGW	1 cut(s)	376
PctI	GAATGC	1 cut(s)	442
PfeI	GAWTC	5 cut(s)	122, 238, 250, 367, 515
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	4 cut(s)	44, 450, 459, 471
PleI	GAGTC	3 cut(s)	142, 313, 409
PpsI	GAGTC	3 cut(s)	142, 313, 409
PstNI	CAGNNNCTG	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	274
SapI	GCTCTTC	1 cut(s)	551
SaqAI	TTAA	3 cut(s)	246, 279, 504
SatI	GCNGC	4 cut(s)	43, 449, 458, 470
Sau3AI	GATC	1 cut(s)	274
SchI	GAGTC	3 cut(s)	142, 313, 410
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	143, 546
SetI	ASST	7 cut(s)	85, 212, 226, 288, 376, 433, 489
SfaNI	GCATC	1 cut(s)	103
SfuI	TTCGAA	1 cut(s)	379
SsiI	CCGC	1 cut(s)	116
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	336
TaqI	TCGA	6 cut(s)	79, 186, 192, 198, 370, 379
TfiI	GAWTC	5 cut(s)	122, 238, 250, 367, 515
Tru1I	TTAA	3 cut(s)	246, 279, 504
Tru9I	TTAA	3 cut(s)	246, 279, 504
TseI	GCWGC	4 cut(s)	42, 448, 457, 469
TspDTI	ATGAA	2 cut(s)	507, 538
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.