Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002768

Physical Location & Seq

Genomic Coordinates Forward (+)

45157208 .. 45158456

Gene Structure 1249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1325400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCGTTGGGAAAGAAGTGCAGGAGTTGCTTGACATCCAAGCGCGGCGCCGGCGGAGTGACGGCGGAGGCGGAGGGGACGATGGAGTTAGGGTTTGTGAAGTACACGCGAGCTTTGGGGAGGAAGAGGATTGGGATTTCTAACAATGGCGAGGGGGATTCGCCGGCTGATTTGTATCCCAAGACTCCATTGAAGAAGCAGCGGAGTGGGGAGATGGTTTGGGAGTCGGAAACTGCCGCCTCCTCCTCTCTAGAAGCTTTGCCTCAGGAGATTCTGTTGAAGATTGTGTGTGGAGTCGATCACGATGATTTGAAGCAGCTTTTCCATGTATCGAAAGCAATTAGAGAAGTGACTCTGATTGCTAAGCAGTGGCATTTCGCTTACAGCACGCCTTCGAAAACCCCTGCTTTCCGAACCGCTATCGATTTCTCAGATTGCAACAGCTGCCTGGATGAGATTGAAGCTCCGAATGCTCCGAAACAGTGGAGGCAGATGCACAGGAAGTTGCCTAACGAGAAGAAGCTTGCTGGGTTGTCTGTGAACTTGTTTGCCTCGTGGGACGAGGAGGAGGAGGAGCAGGGGGCTCGAAAGGGGCTGTTCATGGAGGAAGACGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009961 GO:0010033 GO:0010243 GO:0014070 GO:0033993 GO:0042221 GO:0042493 GO:0043200 GO:0043207 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

207

Amino Acids

22.92

Weight (kDa)

5.91

Isoelectric Point (pI)

52.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61340 AT1G61340 AT4G05010 AT4G21510 AT4G21510
fragaria_vesca	FvH4_3g04020 FvH4_3g04020
malus_domestica	MD05G1112900.v1.1 MD05G1299400.v1.1 MD05G1325400.v1.1 MD10G1303400.v1.1
prunus_persica	Prupe.4G036800_v2.0.a1
pyrus_communis	pycom05g29940 pycom10g25590
rosa_chinensis	RchiOBHm_Chr2g0138281 RchiOBHm_Chr5g0006321
rosa_laevigata	RLG00000019731 RLG00000031025 RLG00000031364
rosa_multiflora	Rmu_sc0002475.1_g000024 Rmu_sc0003884.1_g000003 Rmu_sc0039919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069670 Rroxscaffold_1G00073480 Rroxscaffold_2G00106360
rosa_rugosa	Rorug02G0350800 Rorug04G0421100
rosa_samantha	Rh2AG398500 Rh2BG409300 Rh2CG383700 Rh2CG385300 Rh2DG418800 Rh5AG049000 Rh5BG021300 Rh5BG048200 Rh5CG056400 Rh5DG047300
rosa_wichuraiana	Rw2G032470 Rw5G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	47
AccII	CGCG	2 cut(s)	45, 109
AciI	CCGC	7 cut(s)	45, 54, 65, 71, 202, 237, 417
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	1 cut(s)	104
AgsI	TTSAA	4 cut(s)	193, 280, 313, 461
AjnI	CCWGG	1 cut(s)	447
AluBI	AGCT	6 cut(s)	113, 257, 319, 444, 464, 523
AluI	AGCT	6 cut(s)	113, 257, 319, 444, 464, 523
ApeKI	GCWGC	3 cut(s)	199, 316, 444
AspLEI	GCGC	2 cut(s)	45, 50
AsuII	TTCGAA	1 cut(s)	395
AxyI	CCTNAGG	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	586
BauI	CACGAG	1 cut(s)	553
BbsI	GAAGAC	1 cut(s)	615
BbvI	GCAGC	3 cut(s)	211, 328, 431
BccI	CCATC	2 cut(s)	76, 208
BceAI	ACGGC	1 cut(s)	78
BcgI	CGANNNNNNTGC	2 cut(s)	566, 600
BciT130I	CCWGG	1 cut(s)	449
BciVI	GTATCC	1 cut(s)	186
BfaI	CTAG	1 cut(s)	251
BfoI	RGCGCY	1 cut(s)	51
BfuI	GTATCC	1 cut(s)	186
BisI	GCNGC	5 cut(s)	46, 200, 237, 317, 445
BlpI	GCTNAGC	1 cut(s)	363
BlsI	GCNGC	5 cut(s)	47, 201, 238, 318, 446
Bme1390I	CCNGG	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	449
BmsI	GCATC	1 cut(s)	483
BpiI	GAAGAC	1 cut(s)	615
Bpu1102I	GCTNAGC	1 cut(s)	363
Bpu14I	TTCGAA	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	423
BsaBI	GATNNNNATC	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	48
BsaXI	ACNNNNNCTCC	4 cut(s)	77, 107, 260, 290
Bse118I	RCCGGY	2 cut(s)	50, 163
Bse21I	CCTNAGG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	449
BseCI	ATCGAT	1 cut(s)	423
BseGI	GGATG	2 cut(s)	35, 457
BseJI	GATNNNNATC	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	278, 444
BseRI	GAGGAG	6 cut(s)	232, 235, 578, 581, 584, 587
BseXI	GCAGC	3 cut(s)	211, 328, 431
BseYI	CCCAGC	1 cut(s)	527
BsgI	GTGCAG	1 cut(s)	40
Bsh1236I	CGCG	2 cut(s)	45, 109
BshNI	GGYRCC	1 cut(s)	47
BshVI	ATCGAT	1 cut(s)	423
BsiSI	CCGG	2 cut(s)	51, 164
BslFI	GGGAC	2 cut(s)	91, 572
BsmFI	GGGAC	2 cut(s)	91, 572
BsmI	GAATGC	1 cut(s)	475
Bsp119I	TTCGAA	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	586
Bsp143I	GATC	1 cut(s)	298
Bsp1720I	GCTNAGC	1 cut(s)	363
BspACI	CCGC	7 cut(s)	45, 54, 65, 71, 202, 237, 417
BspCNI	CTCAG	2 cut(s)	277, 443
BspDI	ATCGAT	1 cut(s)	423
BspFNI	CGCG	2 cut(s)	45, 109
BspLI	GGNNCC	1 cut(s)	49
BspT104I	TTCGAA	1 cut(s)	395
BspT107I	GGYRCC	1 cut(s)	47
BsrFI	RCCGGY	2 cut(s)	50, 163
BssAI	RCCGGY	2 cut(s)	50, 163
BssMI	GATC	1 cut(s)	298
BssNI	GRCGYC	1 cut(s)	48
BssSI	CACGAG	1 cut(s)	553
Bst2BI	CACGAG	1 cut(s)	553
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	1 cut(s)	483
Bst6I	CTCTTC	1 cut(s)	119
BstACI	GRCGYC	1 cut(s)	48
BstAPI	GCANNNNNTGC	2 cut(s)	27, 444
BstBI	TTCGAA	1 cut(s)	395
BstC8I	GCNNGC	5 cut(s)	52, 111, 165, 389, 525
BstDEI	CTNAG	3 cut(s)	264, 363, 430
BstF5I	GGATG	2 cut(s)	35, 457
BstFNI	CGCG	2 cut(s)	45, 109
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	2 cut(s)	45, 50
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 51, 444, 470
BstNI	CCWGG	1 cut(s)	449
BstSCI	CCNGG	1 cut(s)	447
BstUI	CGCG	2 cut(s)	45, 109
BstV1I	GCAGC	3 cut(s)	211, 328, 431
BstV2I	GAAGAC	1 cut(s)	615
Bsu15I	ATCGAT	1 cut(s)	423
Bsu36I	CCTNAGG	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	186
BsuTUI	ATCGAT	1 cut(s)	423
BtsCI	GGATG	2 cut(s)	35, 457
BtsI	GCAGTG	1 cut(s)	374
BtsIMutI	CAGTG	2 cut(s)	374, 488
Cac8I	GCNNGC	5 cut(s)	52, 111, 165, 389, 525
CfoI	GCGC	2 cut(s)	45, 50
Cfr10I	RCCGGY	2 cut(s)	50, 163
ClaI	ATCGAT	1 cut(s)	423
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	326, 601
CviJI	RGCY	9 cut(s)	113, 167, 257, 319, 444, 464, 523, 584, 595
CviKI_1	RGCY	9 cut(s)	113, 167, 257, 319, 444, 464, 523, 584, 595
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	3 cut(s)	264, 363, 430
DinI	GGCGCC	1 cut(s)	49
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EciI	GGCGGA	3 cut(s)	69, 80, 86
Eco24I	GRGCYC	1 cut(s)	586
Eco81I	CCTNAGG	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	586
EgeI	GGCGCC	1 cut(s)	49
EheI	GGCGCC	1 cut(s)	49
FaeI	CATG	2 cut(s)	329, 604
FaiI	YATR	2 cut(s)	327, 602
FaqI	GGGAC	2 cut(s)	91, 572
FatI	CATG	2 cut(s)	325, 600
Fnu4HI	GCNGC	5 cut(s)	46, 200, 237, 317, 445
FokI	GGATG	2 cut(s)	22, 464
FriOI	GRGCYC	1 cut(s)	586
Fsp4HI	GCNGC	5 cut(s)	46, 200, 237, 317, 445
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	2 cut(s)	44, 49
GluI	GCNGC	5 cut(s)	46, 200, 237, 317, 445
GsaI	CCCAGC	1 cut(s)	531
HaeII	RGCGCY	1 cut(s)	51
HapII	CCGG	2 cut(s)	51, 164
HhaI	GCGC	2 cut(s)	45, 50
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	329, 604
Hin6I	GCGC	2 cut(s)	43, 48
HinP1I	GCGC	2 cut(s)	43, 48
HindIII	AAGCTT	2 cut(s)	255, 521
HinfI	GANTC	6 cut(s)	158, 184, 224, 271, 294, 352
HpaII	CCGG	2 cut(s)	51, 164
Hpy166II	GTNNAC	2 cut(s)	105, 541
Hpy188I	TCNGA	6 cut(s)	229, 357, 413, 433, 468, 477
Hpy188III	TCNNGA	3 cut(s)	251, 266, 302
Hpy8I	GTNNAC	2 cut(s)	105, 541
HpyAV	CCTTC	1 cut(s)	402
HpyCH4III	ACNGT	1 cut(s)	483
HpyCH4V	TGCA	3 cut(s)	21, 438, 496
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 51, 444, 470
HpyF3I	CTNAG	3 cut(s)	264, 363, 430
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	329, 604
HspAI	GCGC	2 cut(s)	43, 48
KasI	GGCGCC	1 cut(s)	47
KroI	GCCGGC	2 cut(s)	50, 163
KroNI	GCCGGC	2 cut(s)	52, 165
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	3 cut(s)	469, 478, 574
Lsp1109I	GCAGC	3 cut(s)	211, 328, 431
LweI	GCATC	1 cut(s)	483
MaeI	CTAG	1 cut(s)	251
MaeIII	GTNAC	2 cut(s)	58, 349
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	5 cut(s)	136, 205, 292, 529, 620
MhlI	GDGCHC	1 cut(s)	586
MluCI	AATT	1 cut(s)	339
Mly113I	GGCGCC	1 cut(s)	48
MlyI	GAGTC	4 cut(s)	178, 233, 303, 346
MmeI	TCCRAC	1 cut(s)	207
MreI	CGCCGGCG	1 cut(s)	50
MroNI	GCCGGC	2 cut(s)	50, 163
MspA1I	CMGCKG	2 cut(s)	202, 444
MspI	CCGG	2 cut(s)	51, 164
MspR9I	CCNGG	1 cut(s)	449
MteI	GCGCNGCGC	1 cut(s)	46
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	449
MvnI	CGCG	2 cut(s)	45, 109
MwoI	GCNNNNNNNGC	4 cut(s)	27, 51, 444, 470
NaeI	GCCGGC	2 cut(s)	52, 165
NarI	GGCGCC	1 cut(s)	48
NdeII	GATC	1 cut(s)	298
NgoMIV	GCCGGC	2 cut(s)	50, 163
NlaIII	CATG	2 cut(s)	329, 604
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	2 cut(s)	58, 349
NspV	TTCGAA	1 cut(s)	395
PctI	GAATGC	1 cut(s)	475
PdiI	GCCGGC	2 cut(s)	52, 165
PfeI	GAWTC	2 cut(s)	158, 271
PkrI	GCNGC	5 cut(s)	47, 201, 238, 318, 446
PleI	GAGTC	4 cut(s)	178, 232, 302, 346
PluTI	GGCGCC	1 cut(s)	51
PpsI	GAGTC	4 cut(s)	178, 232, 302, 346
Psp6I	CCWGG	1 cut(s)	447
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	444
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SatI	GCNGC	5 cut(s)	46, 200, 237, 317, 445
Sau3AI	GATC	1 cut(s)	298
SchI	GAGTC	4 cut(s)	178, 233, 303, 346
ScrFI	CCNGG	1 cut(s)	449
SduI	GDGCHC	1 cut(s)	586
SetI	ASST	6 cut(s)	115, 259, 321, 446, 466, 525
SfaNI	GCATC	1 cut(s)	483
SfoI	GGCGCC	1 cut(s)	49
SfuI	TTCGAA	1 cut(s)	395
SgrAI	CRCCGGYG	1 cut(s)	50
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	7 cut(s)	45, 54, 65, 71, 202, 237, 417
SspDI	GGCGCC	1 cut(s)	47
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	483
TaqI	TCGA	5 cut(s)	297, 332, 395, 423, 586
TasI	AATT	1 cut(s)	339
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	2 cut(s)	48, 239
TfiI	GAWTC	2 cut(s)	158, 271
TscAI	CASTG	2 cut(s)	374, 488
TseFI	GTSAC	2 cut(s)	58, 349
TseI	GCWGC	3 cut(s)	199, 316, 444
Tsp45I	GTSAC	2 cut(s)	58, 349
TspDTI	ATGAA	1 cut(s)	589
TspRI	CASTG	2 cut(s)	374, 488
XbaI	TCTAGA	1 cut(s)	250
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.