Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002768

Physical Location & Seq

Genomic Coordinates Reverse (-)

52268900 .. 52269650

Gene Structure 751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG383700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCTTTGGGAAAGAATTGCCGGAGTAGTTCACTGAAATGCAGCGTTTCGTCCGGAGGAGGAGCAGAAGAAGGGTTTGTTCGAGCTTTGGGGAGGAAGAGGATAGAAATCCCGGATGCGGAGGATTCCTATTCGGGCCCCAAGACTCCATTGAAGAAGCAGAGGAGCGAGTGTTTCGCTTTTGATTTCGATTTCGAGGGTGAAAGTTCTAAACTTGAAGCTCTGCCTCGGGAGATTCTGATTAAGATTCTGTGTGGAGTTGATCATGAGGATCTTAAACAGCTTTTCAGTGTATCTAAGGCGATTAGAGAAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009961 GO:0010033 GO:0010243 GO:0014070 GO:0033993 GO:0042221 GO:0042493 GO:0043200 GO:0043207 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

105

Amino Acids

11.51

Weight (kDa)

6.58

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61340 AT1G61340 AT4G05010 AT4G21510 AT4G21510
fragaria_vesca	FvH4_3g04020 FvH4_3g04020
malus_domestica	MD05G1112900.v1.1 MD05G1299400.v1.1 MD05G1325400.v1.1 MD10G1303400.v1.1
prunus_persica	Prupe.4G036800_v2.0.a1
pyrus_communis	pycom05g29940 pycom10g25590
rosa_chinensis	RchiOBHm_Chr2g0138281 RchiOBHm_Chr5g0006321
rosa_laevigata	RLG00000019731 RLG00000031025 RLG00000031364
rosa_multiflora	Rmu_sc0002475.1_g000024 Rmu_sc0003884.1_g000003 Rmu_sc0039919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069670 Rroxscaffold_1G00073480 Rroxscaffold_2G00106360
rosa_rugosa	Rorug02G0350800 Rorug04G0421100
rosa_samantha	Rh2AG398500 Rh2BG409300 Rh2CG383700 Rh2CG385300 Rh2DG418800 Rh5AG049000 Rh5BG021300 Rh5BG048200 Rh5CG056400 Rh5DG047300
rosa_wichuraiana	Rw2G032470 Rw5G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	53
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	154, 218
AluBI	AGCT	3 cut(s)	86, 221, 283
AluI	AGCT	3 cut(s)	86, 221, 283
AlwI	GGATC	1 cut(s)	279
Ama87I	CYCGRG	1 cut(s)	228
Aor13HI	TCCGGA	1 cut(s)	53
AoxI	GGCC	1 cut(s)	136
ApaI	GGGCCC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	136, 137
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	54
BclI	TGATCA	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	113
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	136, 137
BmiI	GGNNCC	2 cut(s)	138, 139
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	106
BpuMI	CCSGG	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	227
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse8I	GATNNNNATC	1 cut(s)	107
BseAI	TCCGGA	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	1 cut(s)	121
BseJI	GATNNNNATC	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseRI	GAGGAG	3 cut(s)	72, 75, 178
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	54
BshFI	GGCC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	3 cut(s)	22, 54, 113
BslI	CCNNNNNNNGG	1 cut(s)	118
BsnI	GGCC	1 cut(s)	138
BsoBI	CYCGRG	1 cut(s)	228
Bsp120I	GGGCCC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp13I	TCCGGA	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	262, 271
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	1 cut(s)	138
BspEI	TCCGGA	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	138, 139
BspPI	GGATC	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	2 cut(s)	262, 271
Bst6I	CTCTTC	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	2 cut(s)	265, 274
BstMBI	GATC	2 cut(s)	262, 271
BstSCI	CCNGG	1 cut(s)	111
BstSLI	GKGCMC	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	121
BtsIMutI	CAGTG	2 cut(s)	32, 295
CciI	TCATGA	1 cut(s)	265
Cfr13I	GGNCC	2 cut(s)	136, 137
CviAII	CATG	1 cut(s)	266
CviJI	RGCY	5 cut(s)	5, 86, 138, 221, 283
CviKI_1	RGCY	5 cut(s)	5, 86, 138, 221, 283
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	2 cut(s)	264, 273
DpnII	GATC	2 cut(s)	262, 271
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	140
FaeI	CATG	1 cut(s)	269
FaiI	YATR	1 cut(s)	267
FatI	CATG	1 cut(s)	265
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	43
GluI	GCNGC	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	3 cut(s)	22, 54, 113
Hin1II	CATG	1 cut(s)	269
HinfI	GANTC	4 cut(s)	125, 145, 235, 247
HpaII	CCGG	3 cut(s)	22, 54, 113
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	3 cut(s)	54, 230, 266
Hpy8I	GTNNAC	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	65
HpyCH4V	TGCA	1 cut(s)	42
HpyF3I	CTNAG	1 cut(s)	297
Hsp92II	CATG	1 cut(s)	269
Kpn2I	TCCGGA	1 cut(s)	53
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	262, 271
LmnI	GCTCC	2 cut(s)	62, 165
LpnPI	CCDG	3 cut(s)	35, 67, 126
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	1 cut(s)	106
MalI	GATC	2 cut(s)	264, 273
MboI	GATC	2 cut(s)	262, 271
MboII	GAAGA	3 cut(s)	80, 109, 166
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	1 cut(s)	16
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	9 cut(s)	50, 53, 87, 93, 115, 156, 190, 237, 262
MroI	TCCGGA	1 cut(s)	53
MseI	TTAA	2 cut(s)	243, 276
MslI	CAYNNNNRTG	1 cut(s)	37
MspI	CCGG	3 cut(s)	22, 54, 113
MspR9I	CCNGG	1 cut(s)	113
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	2 cut(s)	262, 271
NlaIII	CATG	1 cut(s)	269
NlaIV	GGNNCC	2 cut(s)	138, 139
PagI	TCATGA	1 cut(s)	265
PfeI	GAWTC	3 cut(s)	125, 235, 247
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	44
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	138, 139
PspOMI	GGGCCC	1 cut(s)	136
PspPI	GGNCC	2 cut(s)	136, 137
PsuI	RGATCY	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	243, 276
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	2 cut(s)	262, 271
Sau96I	GGNCC	2 cut(s)	136, 137
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	3 cut(s)	88, 223, 285
SfaNI	GCATC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	37
Sse9I	AATT	1 cut(s)	16
SsiI	CCGC	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	111
TaqI	TCGA	3 cut(s)	82, 189, 195
TasI	AATT	1 cut(s)	16
TfiI	GAWTC	3 cut(s)	125, 235, 247
Tru1I	TTAA	2 cut(s)	243, 276
Tru9I	TTAA	2 cut(s)	243, 276
TscAI	CASTG	2 cut(s)	39, 295
TseI	GCWGC	1 cut(s)	42
TspRI	CASTG	2 cut(s)	39, 295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.