Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002768

Physical Location & Seq

Genomic Coordinates Reverse (-)

60758058 .. 60759278

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG418800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCTTTGGGAAAGAATTGCCGGAGTAGTTCACTGAAATGCAGCGTTTCGTCCGGAGGAGGAGGAGGAGAAGAAGGGTTTGTTCGAGCTTTGGGGAGGAAGAGGATAGAAATCCCGGATGCGGAGGATTCCTATTCGGGCCCCAAGACTCCATTGAAGAAGCAGAGGAGCCAGTGTTTCGCTTTTGATTTCGATTTCGAGGGTGAAAGTTCCAAACTTGAAGCTCTGCCTCGGGAGATTCTGATTAAGATTCTGTGTGGAGTTGATCATGAGGATCTTAAACAGCTTTTCAGTGTATCTAAGGCGATTAGAGAAGCGACCCTTATTGCGAAACAGTTGCATTTTGCTTACAGCACACCAACAAAGATTCCAGCTTTTCGAACCAAGGTTGATTTTTCGGAGTCAAATGATGAATTGGATGAGATTGAAGCTCCGAATGCTCCGAGGCTGCATAGGGCGCTTCCGAGCCGGAAAAAGCTTGAAGAGATATCTGTTAACTTATTGGATTCATTGGAGGAAGGAATCAGAAGAGGGCTTTTCATGGATGAAGATTATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009961 GO:0010033 GO:0010243 GO:0014070 GO:0033993 GO:0042221 GO:0042493 GO:0043200 GO:0043207 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

186

Amino Acids

20.75

Weight (kDa)

5.57

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61340 AT1G61340 AT4G05010 AT4G21510 AT4G21510
fragaria_vesca	FvH4_3g04020 FvH4_3g04020
malus_domestica	MD05G1112900.v1.1 MD05G1299400.v1.1 MD05G1325400.v1.1 MD10G1303400.v1.1
prunus_persica	Prupe.4G036800_v2.0.a1
pyrus_communis	pycom05g29940 pycom10g25590
rosa_chinensis	RchiOBHm_Chr2g0138281 RchiOBHm_Chr5g0006321
rosa_laevigata	RLG00000019731 RLG00000031025 RLG00000031364
rosa_multiflora	Rmu_sc0002475.1_g000024 Rmu_sc0003884.1_g000003 Rmu_sc0039919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069670 Rroxscaffold_1G00073480 Rroxscaffold_2G00106360
rosa_rugosa	Rorug02G0350800 Rorug04G0421100
rosa_samantha	Rh2AG398500 Rh2BG409300 Rh2CG383700 Rh2CG385300 Rh2DG418800 Rh5AG049000 Rh5BG021300 Rh5BG048200 Rh5CG056400 Rh5DG047300
rosa_wichuraiana	Rw2G032470 Rw5G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	53
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	4 cut(s)	157, 221, 428, 482
AluBI	AGCT	6 cut(s)	89, 224, 286, 374, 431, 478
AluI	AGCT	6 cut(s)	89, 224, 286, 374, 431, 478
AlwI	GGATC	1 cut(s)	282
Ama87I	CYCGRG	1 cut(s)	231
Aor13HI	TCCGGA	1 cut(s)	53
AoxI	GGCC	1 cut(s)	139
ApaI	GGGCCC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	42, 448
AspLEI	GCGC	1 cut(s)	460
AspS9I	GGNCC	2 cut(s)	139, 140
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	215
AsuII	TTCGAA	1 cut(s)	379
AvaI	CYCGRG	1 cut(s)	231
BaeGI	GKGCMC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	54, 435
BcgI	CGANNNNNNTGC	2 cut(s)	319, 353
BclI	TGATCA	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	116
BfoI	RGCGCY	1 cut(s)	461
BisI	GCNGC	2 cut(s)	43, 449
BlsI	GCNGC	2 cut(s)	44, 450
Bme1390I	CCNGG	1 cut(s)	116
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	2 cut(s)	139, 140
BmiI	GGNNCC	3 cut(s)	141, 142, 170
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	109
Bpu14I	TTCGAA	1 cut(s)	379
BpuMI	CCSGG	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	110
BsaJI	CCNNGG	3 cut(s)	230, 384, 443
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	172
Bse8I	GATNNNNATC	1 cut(s)	110
BseAI	TCCGGA	1 cut(s)	53
BseDI	CCNNGG	3 cut(s)	230, 384, 443
BseGI	GGATG	3 cut(s)	124, 424, 550
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	5 cut(s)	72, 75, 78, 81, 181
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	54, 435
BshFI	GGCC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	4 cut(s)	22, 54, 116, 469
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmI	GAATGC	1 cut(s)	442
BsnI	GGCC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	231
Bsp119I	TTCGAA	1 cut(s)	379
Bsp120I	GGGCCC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp13I	TCCGGA	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	265, 274
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	141
BspEI	TCCGGA	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	3 cut(s)	141, 142, 170
BspPI	GGATC	1 cut(s)	282
BspT104I	TTCGAA	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	3 cut(s)	230, 384, 443
BssMI	GATC	2 cut(s)	265, 274
BssT1I	CCWWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	336
Bst6I	CTCTTC	3 cut(s)	95, 477, 523
BstBI	TTCGAA	1 cut(s)	379
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	3 cut(s)	124, 424, 550
BstH2I	RGCGCY	1 cut(s)	461
BstHHI	GCGC	1 cut(s)	460
BstKTI	GATC	2 cut(s)	268, 277
BstMBI	GATC	2 cut(s)	265, 274
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 457
BstSCI	CCNGG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	54, 435
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	141
BtsCI	GGATG	3 cut(s)	124, 424, 550
BtsIMutI	CAGTG	3 cut(s)	32, 179, 298
CciI	TCATGA	1 cut(s)	268
CfoI	GCGC	1 cut(s)	460
Cfr13I	GGNCC	2 cut(s)	139, 140
CviAII	CATG	2 cut(s)	269, 541
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	2 cut(s)	267, 276
DpnII	GATC	2 cut(s)	265, 274
Eam1104I	CTCTTC	3 cut(s)	95, 477, 523
EarI	CTCTTC	3 cut(s)	95, 477, 523
Eco130I	CCWWGG	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	143
Eco32I	GATATC	1 cut(s)	489
Eco88I	CYCGRG	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	140
EcoRV	GATATC	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	384
EcoT38I	GRGCYC	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	2 cut(s)	272, 544
FaiI	YATR	4 cut(s)	270, 453, 542, 555
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FatI	CATG	2 cut(s)	268, 540
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	43, 449
FokI	GGATG	3 cut(s)	131, 431, 557
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	2 cut(s)	43, 449
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	2 cut(s)	43, 449
HaeII	RGCGCY	1 cut(s)	461
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	4 cut(s)	22, 54, 116, 469
HhaI	GCGC	1 cut(s)	460
Hin1II	CATG	2 cut(s)	272, 544
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	8 cut(s)	128, 148, 238, 250, 367, 401, 506, 522
HpaI	GTTAAC	1 cut(s)	496
HpaII	CCGG	4 cut(s)	22, 54, 116, 469
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	32, 496
Hpy188I	TCNGA	6 cut(s)	243, 400, 435, 444, 465, 527
Hpy188III	TCNNGA	3 cut(s)	54, 233, 269
Hpy8I	GTNNAC	2 cut(s)	32, 496
HpyAV	CCTTC	2 cut(s)	68, 512
HpyCH4III	ACNGT	1 cut(s)	336
HpyCH4V	TGCA	3 cut(s)	42, 340, 451
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 457
HpyF3I	CTNAG	1 cut(s)	300
Hsp92II	CATG	2 cut(s)	272, 544
HspAI	GCGC	1 cut(s)	458
Kpn2I	TCCGGA	1 cut(s)	53
Ksp22I	TGATCA	1 cut(s)	265
KspAI	GTTAAC	1 cut(s)	496
Kzo9I	GATC	2 cut(s)	265, 274
LmnI	GCTCC	3 cut(s)	168, 436, 445
LpnPI	CCDG	6 cut(s)	35, 67, 129, 185, 384, 482
Lsp1109I	GCAGC	2 cut(s)	54, 435
LweI	GCATC	1 cut(s)	109
MalI	GATC	2 cut(s)	267, 276
MboI	GATC	2 cut(s)	265, 274
MboII	GAAGA	6 cut(s)	83, 112, 169, 494, 540, 560
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	2 cut(s)	16, 413
MlyI	GAGTC	2 cut(s)	142, 410
MroI	TCCGGA	1 cut(s)	53
MseI	TTAA	3 cut(s)	246, 279, 495
MslI	CAYNNNNRTG	1 cut(s)	37
MspI	CCGG	4 cut(s)	22, 54, 116, 469
MspR9I	CCNGG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	442
MwoI	GCNNNNNNNGC	2 cut(s)	437, 457
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	2 cut(s)	265, 274
NlaIII	CATG	2 cut(s)	272, 544
NlaIV	GGNNCC	3 cut(s)	141, 142, 170
NspV	TTCGAA	1 cut(s)	379
PagI	TCATGA	1 cut(s)	268
PctI	GAATGC	1 cut(s)	442
PfeI	GAWTC	6 cut(s)	128, 238, 250, 367, 506, 522
PfoI	TCCNGGA	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	44, 450
PleI	GAGTC	2 cut(s)	142, 409
PpsI	GAGTC	2 cut(s)	142, 409
PspN4I	GGNNCC	3 cut(s)	141, 142, 170
PspOMI	GGGCCC	1 cut(s)	139
PspPI	GGNCC	2 cut(s)	139, 140
PsuI	RGATCY	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	37
SaqAI	TTAA	3 cut(s)	246, 279, 495
SatI	GCNGC	2 cut(s)	43, 449
Sau3AI	GATC	2 cut(s)	265, 274
Sau96I	GGNCC	2 cut(s)	139, 140
SchI	GAGTC	2 cut(s)	142, 410
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	7 cut(s)	91, 226, 288, 376, 390, 433, 480
SfaNI	GCATC	1 cut(s)	109
SfuI	TTCGAA	1 cut(s)	379
SmiMI	CAYNNNNRTG	1 cut(s)	37
Sse9I	AATT	2 cut(s)	16, 413
SsiI	CCGC	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	336
TaqI	TCGA	4 cut(s)	85, 192, 198, 379
TasI	AATT	2 cut(s)	16, 413
TfiI	GAWTC	6 cut(s)	128, 238, 250, 367, 506, 522
Tru1I	TTAA	3 cut(s)	246, 279, 495
Tru9I	TTAA	3 cut(s)	246, 279, 495
TscAI	CASTG	3 cut(s)	39, 179, 298
TseI	GCWGC	2 cut(s)	42, 448
TspDTI	ATGAA	4 cut(s)	426, 498, 529, 561
TspRI	CASTG	3 cut(s)	39, 179, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.