Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002768

Physical Location & Seq

Genomic Coordinates Forward (+)

58006097 .. 58007322

Gene Structure 1226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG409300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCCTTGGGAAAGAATTGCCGGAGTAGTTCACTGAAATGCAGCGTTTCGTCCGGAGGAGGAGGAGAAGGGTTTGTTCGAGCTTTGGGGAGGAAGAGGATAGAAATCCCGGATGCGGAGGATTCCTATTCGGGCCCCAAGACTCCATTGAAGAAGCAGAGGAGCCAGTGTTTCGCTTTTGATTTCGATTTCGAGGGTGAAAGTTCCAAACTTGAAGCTCTGCCTCGGGAGATTCTGATTAAGATTCTCTGTGGAGTTGATCATGAGGATCTTAAACAGCTTTTCAGTGTATCCAAGGCTATTAGAGAAGCGACTCTTATTGCGAAACAGTTGCATTTTGCTTACAGCACACCAACAAAGATTCCAGCTTTTCGAACCAAGATTGATTTTTCGGAGTCAAATGATGAATTGGATGAGATTGAAGCTCCGAATGCTCCGAGGCTGCATAGGGCGCTTCCGAGCCGGAAAAAGCTTGAAGAGATATCTGTTAACTTATTGGATTCATTGGAGGAAGGAATCAGAAGAGGGCTTTTCATGGATGAAGATGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009961 GO:0010033 GO:0010243 GO:0014070 GO:0033993 GO:0042221 GO:0042493 GO:0043200 GO:0043207 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

184

Amino Acids

20.53

Weight (kDa)

5.57

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61340 AT1G61340 AT4G05010 AT4G21510 AT4G21510
fragaria_vesca	FvH4_3g04020 FvH4_3g04020
malus_domestica	MD05G1112900.v1.1 MD05G1299400.v1.1 MD05G1325400.v1.1 MD10G1303400.v1.1
prunus_persica	Prupe.4G036800_v2.0.a1
pyrus_communis	pycom05g29940 pycom10g25590
rosa_chinensis	RchiOBHm_Chr2g0138281 RchiOBHm_Chr5g0006321
rosa_laevigata	RLG00000019731 RLG00000031025 RLG00000031364
rosa_multiflora	Rmu_sc0002475.1_g000024 Rmu_sc0003884.1_g000003 Rmu_sc0039919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069670 Rroxscaffold_1G00073480 Rroxscaffold_2G00106360
rosa_rugosa	Rorug02G0350800 Rorug04G0421100
rosa_samantha	Rh2AG398500 Rh2BG409300 Rh2CG383700 Rh2CG385300 Rh2DG418800 Rh5AG049000 Rh5BG021300 Rh5BG048200 Rh5CG056400 Rh5DG047300
rosa_wichuraiana	Rw2G032470 Rw5G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	53
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	1 cut(s)	276
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	4 cut(s)	151, 215, 422, 476
AluBI	AGCT	6 cut(s)	83, 218, 280, 368, 425, 472
AluI	AGCT	6 cut(s)	83, 218, 280, 368, 425, 472
AlwI	GGATC	1 cut(s)	276
Ama87I	CYCGRG	1 cut(s)	225
Aor13HI	TCCGGA	1 cut(s)	53
AoxI	GGCC	2 cut(s)	3, 133
ApaI	GGGCCC	1 cut(s)	137
ApeKI	GCWGC	2 cut(s)	42, 442
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	2 cut(s)	133, 134
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	209
AsuII	TTCGAA	1 cut(s)	373
AvaI	CYCGRG	1 cut(s)	225
BaeGI	GKGCMC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	54, 429
BcgI	CGANNNNNNTGC	2 cut(s)	313, 347
BciVI	GTATCC	1 cut(s)	301
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	110
BfoI	RGCGCY	1 cut(s)	455
BfuI	GTATCC	1 cut(s)	301
BisI	GCNGC	2 cut(s)	43, 443
BlsI	GCNGC	2 cut(s)	44, 444
Bme1390I	CCNGG	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	225
BmgT120I	GGNCC	2 cut(s)	133, 134
BmiI	GGNNCC	3 cut(s)	135, 136, 164
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	103
Bpu14I	TTCGAA	1 cut(s)	373
BpuMI	CCSGG	1 cut(s)	110
BsaBI	GATNNNNATC	1 cut(s)	104
BsaJI	CCNNGG	4 cut(s)	6, 224, 294, 437
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	166
Bse8I	GATNNNNATC	1 cut(s)	104
BseAI	TCCGGA	1 cut(s)	53
BseDI	CCNNGG	4 cut(s)	6, 224, 294, 437
BseGI	GGATG	3 cut(s)	118, 418, 544
BseJI	GATNNNNATC	1 cut(s)	104
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	4 cut(s)	72, 75, 78, 175
BseSI	GKGCMC	1 cut(s)	137
BseXI	GCAGC	2 cut(s)	54, 429
BshFI	GGCC	2 cut(s)	5, 135
BsiHKCI	CYCGRG	1 cut(s)	225
BsiSI	CCGG	4 cut(s)	22, 54, 110, 463
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	436
BsnI	GGCC	2 cut(s)	5, 135
BsoBI	CYCGRG	1 cut(s)	225
Bsp119I	TTCGAA	1 cut(s)	373
Bsp120I	GGGCCC	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp13I	TCCGGA	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	259, 268
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	2 cut(s)	5, 135
BspEI	TCCGGA	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	3 cut(s)	135, 136, 164
BspPI	GGATC	1 cut(s)	276
BspT104I	TTCGAA	1 cut(s)	373
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	4 cut(s)	6, 224, 294, 437
BssMI	GATC	2 cut(s)	259, 268
BssT1I	CCWWGG	2 cut(s)	6, 294
Bst4CI	ACNGT	1 cut(s)	330
Bst6I	CTCTTC	3 cut(s)	89, 471, 517
BstBI	TTCGAA	1 cut(s)	373
BstF5I	GGATG	3 cut(s)	118, 418, 544
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	2 cut(s)	262, 271
BstMBI	GATC	2 cut(s)	259, 268
BstMWI	GCNNNNNNNGC	2 cut(s)	431, 451
BstSCI	CCNGG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	137
BstV1I	GCAGC	2 cut(s)	54, 429
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	2 cut(s)	5, 135
BtsCI	GGATG	3 cut(s)	118, 418, 544
BtsIMutI	CAGTG	3 cut(s)	32, 173, 292
CciI	TCATGA	1 cut(s)	262
CfoI	GCGC	1 cut(s)	454
Cfr13I	GGNCC	2 cut(s)	133, 134
CviAII	CATG	2 cut(s)	263, 535
DpnI	GATC	2 cut(s)	261, 270
DpnII	GATC	2 cut(s)	259, 268
Eam1104I	CTCTTC	3 cut(s)	89, 471, 517
EarI	CTCTTC	3 cut(s)	89, 471, 517
Eco130I	CCWWGG	2 cut(s)	6, 294
Eco24I	GRGCYC	1 cut(s)	137
Eco32I	GATATC	1 cut(s)	483
Eco88I	CYCGRG	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRV	GATATC	1 cut(s)	483
EcoT14I	CCWWGG	2 cut(s)	6, 294
EcoT38I	GRGCYC	1 cut(s)	137
ErhI	CCWWGG	2 cut(s)	6, 294
FaeI	CATG	2 cut(s)	266, 538
FaiI	YATR	3 cut(s)	264, 447, 536
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	2 cut(s)	262, 534
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	2 cut(s)	43, 443
FokI	GGATG	3 cut(s)	125, 425, 551
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	2 cut(s)	43, 443
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	2 cut(s)	43, 443
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	2 cut(s)	5, 135
HapII	CCGG	4 cut(s)	22, 54, 110, 463
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	2 cut(s)	266, 538
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	9 cut(s)	122, 142, 232, 244, 313, 361, 395, 500, 516
HpaI	GTTAAC	1 cut(s)	490
HpaII	CCGG	4 cut(s)	22, 54, 110, 463
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	2 cut(s)	32, 490
Hpy188I	TCNGA	6 cut(s)	237, 394, 429, 438, 459, 521
Hpy188III	TCNNGA	3 cut(s)	54, 227, 263
Hpy8I	GTNNAC	2 cut(s)	32, 490
HpyAV	CCTTC	2 cut(s)	62, 506
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4V	TGCA	3 cut(s)	42, 334, 445
HpyF10VI	GCNNNNNNNGC	2 cut(s)	431, 451
Hsp92II	CATG	2 cut(s)	266, 538
HspAI	GCGC	1 cut(s)	452
Kpn2I	TCCGGA	1 cut(s)	53
Ksp22I	TGATCA	1 cut(s)	259
KspAI	GTTAAC	1 cut(s)	490
Kzo9I	GATC	2 cut(s)	259, 268
LmnI	GCTCC	3 cut(s)	162, 430, 439
LpnPI	CCDG	6 cut(s)	35, 67, 123, 179, 378, 476
Lsp1109I	GCAGC	2 cut(s)	54, 429
LweI	GCATC	1 cut(s)	103
MalI	GATC	2 cut(s)	261, 270
MboI	GATC	2 cut(s)	259, 268
MboII	GAAGA	5 cut(s)	106, 163, 488, 534, 554
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	2 cut(s)	16, 407
MlyI	GAGTC	3 cut(s)	136, 307, 404
MroI	TCCGGA	1 cut(s)	53
MseI	TTAA	3 cut(s)	240, 273, 489
MslI	CAYNNNNRTG	1 cut(s)	37
MspI	CCGG	4 cut(s)	22, 54, 110, 463
MspR9I	CCNGG	1 cut(s)	110
Mva1269I	GAATGC	1 cut(s)	436
MwoI	GCNNNNNNNGC	2 cut(s)	431, 451
NciI	CCSGG	1 cut(s)	110
NdeII	GATC	2 cut(s)	259, 268
NlaIII	CATG	2 cut(s)	266, 538
NlaIV	GGNNCC	3 cut(s)	135, 136, 164
NspV	TTCGAA	1 cut(s)	373
PagI	TCATGA	1 cut(s)	262
PctI	GAATGC	1 cut(s)	436
PfeI	GAWTC	6 cut(s)	122, 232, 244, 361, 500, 516
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	44, 444
PleI	GAGTC	3 cut(s)	136, 307, 403
PpsI	GAGTC	3 cut(s)	136, 307, 403
PspN4I	GGNNCC	3 cut(s)	135, 136, 164
PspOMI	GGGCCC	1 cut(s)	133
PspPI	GGNCC	2 cut(s)	133, 134
PsuI	RGATCY	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	37
SaqAI	TTAA	3 cut(s)	240, 273, 489
SatI	GCNGC	2 cut(s)	43, 443
Sau3AI	GATC	2 cut(s)	259, 268
Sau96I	GGNCC	2 cut(s)	133, 134
SchI	GAGTC	3 cut(s)	136, 307, 404
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	6 cut(s)	85, 220, 282, 370, 427, 474
SfaNI	GCATC	1 cut(s)	103
SfuI	TTCGAA	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	37
Sse9I	AATT	2 cut(s)	16, 407
SsiI	CCGC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	2 cut(s)	6, 294
TaaI	ACNGT	1 cut(s)	330
TaqI	TCGA	4 cut(s)	79, 186, 192, 373
TasI	AATT	2 cut(s)	16, 407
TfiI	GAWTC	6 cut(s)	122, 232, 244, 361, 500, 516
Tru1I	TTAA	3 cut(s)	240, 273, 489
Tru9I	TTAA	3 cut(s)	240, 273, 489
TscAI	CASTG	3 cut(s)	39, 173, 292
TseI	GCWGC	2 cut(s)	42, 442
TspDTI	ATGAA	4 cut(s)	420, 492, 523, 555
TspRI	CASTG	3 cut(s)	39, 173, 292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.