Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002768

Physical Location & Seq

Genomic Coordinates Reverse (-)

2245250 .. 2246484

Gene Structure 1235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g04020.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTTTGGGGAGGAAGTGCCGGAGTAGTTCACTGAAACGCAGCGTTTCGTTTGGAGTAGGAGAAGGGTTTGTGAGAGCTTTCGGGAGGAAGAGGATTGAAGTTGATGATGATTCGGGTATTGGTATTGAGTTGAGGAGCCCCAAGACTCCATTGAAGAAGCAGAGGAGCGAGTGTTTCGAGTTCAGTTTCGATTTCGAGGAGGAAGTGTCTAAACTAGAAGCTTTGCCTCAGGAGATTCTGATTAAGATTCTGTGTGGAGTTGATCATGAGGATCTTAAACAGCTGTTCCATGTATCTAAGGCGATTAGAGAAGCGACTATTATAGCGAAAAAGTGGCATTTTGCTTATAGCACACCTAGAAAGATTCGGGCTTTTCGAACTAAGATTGATTTCTCGGAGTCGAATGAGGATTTGGATGAGATTGAAGCTCCTAATGCTCCGAGGCAGCAGAGGCTGCATAGGGCGCTACCGAGCCGGAAAAAGCTTGAAGAGATTTCAGTTAACTTATTGGATTCACTGGAGGAAGGAATAAGAAGAGGGCTTTTCATGGATGAAGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009961 GO:0010033 GO:0010243 GO:0014070 GO:0033993 GO:0042221 GO:0042493 GO:0043200 GO:0043207 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

189

Amino Acids

21.65

Weight (kDa)

6.93

Isoelectric Point (pI)

65.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61340 AT1G61340 AT4G05010 AT4G21510 AT4G21510
fragaria_vesca	FvH4_3g04020 FvH4_3g04020
malus_domestica	MD05G1112900.v1.1 MD05G1299400.v1.1 MD05G1325400.v1.1 MD10G1303400.v1.1
prunus_persica	Prupe.4G036800_v2.0.a1
pyrus_communis	pycom05g29940 pycom10g25590
rosa_chinensis	RchiOBHm_Chr2g0138281 RchiOBHm_Chr5g0006321
rosa_laevigata	RLG00000019731 RLG00000031025 RLG00000031364
rosa_multiflora	Rmu_sc0002475.1_g000024 Rmu_sc0003884.1_g000003 Rmu_sc0039919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069670 Rroxscaffold_1G00073480 Rroxscaffold_2G00106360
rosa_rugosa	Rorug02G0350800 Rorug04G0421100
rosa_samantha	Rh2AG398500 Rh2BG409300 Rh2CG383700 Rh2CG385300 Rh2DG418800 Rh5AG049000 Rh5BG021300 Rh5BG048200 Rh5CG056400 Rh5DG047300
rosa_wichuraiana	Rw2G032470 Rw5G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	282
AgsI	TTSAA	4 cut(s)	101, 157, 428, 491
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	5 cut(s)	80, 224, 286, 431, 487
AluI	AGCT	5 cut(s)	80, 224, 286, 431, 487
AlwI	GGATC	1 cut(s)	282
AlwNI	CAGNNNCTG	1 cut(s)	457
ApeKI	GCWGC	3 cut(s)	42, 448, 457
AspLEI	GCGC	1 cut(s)	469
AsuII	TTCGAA	1 cut(s)	379
AxyI	CCTNAGG	1 cut(s)	231
BanII	GRGCYC	1 cut(s)	143
BbvI	GCAGC	3 cut(s)	54, 444, 460
BclI	TGATCA	1 cut(s)	265
BfaI	CTAG	2 cut(s)	218, 360
BfoI	RGCGCY	1 cut(s)	470
BisI	GCNGC	3 cut(s)	43, 449, 458
BlsI	GCNGC	3 cut(s)	44, 450, 459
BmiI	GGNNCC	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	542
Bpu14I	TTCGAA	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	443
BsaXI	ACNNNNNCTCC	4 cut(s)	160, 190, 194, 224
Bse1I	ACTGG	1 cut(s)	525
Bse21I	CCTNAGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	443
BseGI	GGATG	2 cut(s)	424, 559
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	525
BseRI	GAGGAG	3 cut(s)	151, 181, 215
BseXI	GCAGC	3 cut(s)	54, 444, 460
BsiSI	CCGG	2 cut(s)	22, 478
Bsp119I	TTCGAA	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	265, 274
BspCNI	CTCAG	1 cut(s)	244
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	282
BspT104I	TTCGAA	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	525
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	2 cut(s)	265, 274
Bst6I	CTCTTC	3 cut(s)	86, 486, 532
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstBI	TTCGAA	1 cut(s)	379
BstDEI	CTNAG	3 cut(s)	231, 300, 384
BstF5I	GGATG	2 cut(s)	424, 559
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	2 cut(s)	268, 277
BstMBI	GATC	2 cut(s)	265, 274
BstMWI	GCNNNNNNNGC	4 cut(s)	437, 454, 457, 466
BstV1I	GCAGC	3 cut(s)	54, 444, 460
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
Bsu36I	CCTNAGG	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	424, 559
BtsIMutI	CAGTG	2 cut(s)	32, 518
CaiI	CAGNNNCTG	1 cut(s)	457
CciI	TCATGA	1 cut(s)	268
CfoI	GCGC	1 cut(s)	469
CviAII	CATG	3 cut(s)	269, 293, 550
DdeI	CTNAG	3 cut(s)	231, 300, 384
DpnI	GATC	2 cut(s)	267, 276
DpnII	GATC	2 cut(s)	265, 274
Eam1104I	CTCTTC	3 cut(s)	86, 486, 532
EarI	CTCTTC	3 cut(s)	86, 486, 532
Eco24I	GRGCYC	1 cut(s)	143
Eco81I	CCTNAGG	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	143
FaeI	CATG	3 cut(s)	272, 296, 553
FaiI	YATR	6 cut(s)	270, 294, 326, 351, 462, 551
FatI	CATG	3 cut(s)	268, 292, 549
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	3 cut(s)	43, 449, 458
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	3 cut(s)	43, 449, 458
FspBI	CTAG	2 cut(s)	218, 360
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	3 cut(s)	43, 449, 458
GsuI	CTGGAG	1 cut(s)	542
HaeII	RGCGCY	1 cut(s)	470
HapII	CCGG	2 cut(s)	22, 478
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	3 cut(s)	272, 296, 553
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HindIII	AAGCTT	2 cut(s)	222, 485
HinfI	GANTC	7 cut(s)	113, 148, 238, 250, 367, 401, 515
HpaI	GTTAAC	1 cut(s)	505
HpaII	CCGG	2 cut(s)	22, 478
Hpy166II	GTNNAC	2 cut(s)	32, 505
Hpy188I	TCNGA	3 cut(s)	243, 400, 444
Hpy188III	TCNNGA	3 cut(s)	85, 233, 269
Hpy8I	GTNNAC	2 cut(s)	32, 505
HpyAV	CCTTC	2 cut(s)	59, 521
HpyCH4V	TGCA	1 cut(s)	460
HpyF10VI	GCNNNNNNNGC	4 cut(s)	437, 454, 457, 466
HpyF3I	CTNAG	3 cut(s)	231, 300, 384
Hsp92II	CATG	3 cut(s)	272, 296, 553
HspAI	GCGC	1 cut(s)	467
Ksp22I	TGATCA	1 cut(s)	265
KspAI	GTTAAC	1 cut(s)	505
Kzo9I	GATC	2 cut(s)	265, 274
LmnI	GCTCC	4 cut(s)	138, 168, 436, 445
LpnPI	CCDG	4 cut(s)	35, 218, 491, 506
Lsp1109I	GCAGC	3 cut(s)	54, 444, 460
MaeI	CTAG	2 cut(s)	218, 360
MalI	GATC	2 cut(s)	267, 276
MboI	GATC	2 cut(s)	265, 274
MboII	GAAGA	4 cut(s)	103, 169, 503, 549
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	143
MlyI	GAGTC	2 cut(s)	142, 410
MseI	TTAA	3 cut(s)	246, 279, 504
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	2 cut(s)	22, 478
MwoI	GCNNNNNNNGC	4 cut(s)	437, 454, 457, 466
NdeII	GATC	2 cut(s)	265, 274
NlaIII	CATG	3 cut(s)	272, 296, 553
NlaIV	GGNNCC	1 cut(s)	140
NspV	TTCGAA	1 cut(s)	379
PagI	TCATGA	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	376
PfeI	GAWTC	5 cut(s)	113, 238, 250, 367, 515
PkrI	GCNGC	3 cut(s)	44, 450, 459
PleI	GAGTC	2 cut(s)	142, 409
PpsI	GAGTC	2 cut(s)	142, 409
PspN4I	GGNNCC	1 cut(s)	140
PstNI	CAGNNNCTG	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	286
SaqAI	TTAA	3 cut(s)	246, 279, 504
SatI	GCNGC	3 cut(s)	43, 449, 458
Sau3AI	GATC	2 cut(s)	265, 274
SchI	GAGTC	2 cut(s)	142, 410
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	6 cut(s)	82, 226, 288, 361, 433, 489
SfuI	TTCGAA	1 cut(s)	379
SspMI	CTAG	2 cut(s)	218, 360
TaqI	TCGA	5 cut(s)	180, 192, 198, 379, 404
TfiI	GAWTC	5 cut(s)	113, 238, 250, 367, 515
Tru1I	TTAA	3 cut(s)	246, 279, 504
Tru9I	TTAA	3 cut(s)	246, 279, 504
TscAI	CASTG	2 cut(s)	39, 525
TseI	GCWGC	3 cut(s)	42, 448, 457
TspDTI	ATGAA	1 cut(s)	538
TspRI	CASTG	2 cut(s)	39, 525
XspI	CTAG	2 cut(s)	218, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.