Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002768

Physical Location & Seq

Genomic Coordinates Forward (+)

29950067 .. 29951159

Gene Structure 1093 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00106360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCTTTGGGAAAGAATTGCCGGAGTAGTTCACTGAAATGCAGCGTTTCGTCCGGAGGAGGAGGAGGAGGAGAAGAAGGGTTTGTTCGAGCTTTGGGGAGGAAGAGGATAGAAATCCAGGATGAGGAGGATTCTTACTCGGGCCCCAAGACTCCATTGAAGAAGCAGAGGAGCGAGTGTTTCGGTTTTGATTTCGATTTCGAGGGTGAAAGTTCTAAACTTGAAGCTCTGCCTCGGGAGATTCTGATTAAGATTCTGTGTGGAGTTGATCATGAGGATCTTAAACAGCTTTTCAGTGTATCTAAGACGATTAGAGAAGCGACTCTTGTTGCGAAACAGTTGCATTTTGCTTACAGCACACCAAGAAAGATTCCAGCTTTTCGAACCAAGATTGATTTTTCGGAGTCAAATGATGAATTGGATGAGATTGAAGCTCCGAATGCTCCGAGGCAGCAGAGGCTGCATAGGGAGCTTCCGAGCCGGAAAAAGCTTGAAGAGATATCTGTCAACTTATTGGATTCATTGGAGGAAGGAATCAGAAGAGGGCTTTTCATGGATGAAGATGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009961 GO:0010033 GO:0010243 GO:0014070 GO:0033993 GO:0042221 GO:0042493 GO:0043200 GO:0043207 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

190

Amino Acids

21.39

Weight (kDa)

5.33

Isoelectric Point (pI)

61.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61340 AT1G61340 AT4G05010 AT4G21510 AT4G21510
fragaria_vesca	FvH4_3g04020 FvH4_3g04020
malus_domestica	MD05G1112900.v1.1 MD05G1299400.v1.1 MD05G1325400.v1.1 MD10G1303400.v1.1
prunus_persica	Prupe.4G036800_v2.0.a1
pyrus_communis	pycom05g29940 pycom10g25590
rosa_chinensis	RchiOBHm_Chr2g0138281 RchiOBHm_Chr5g0006321
rosa_laevigata	RLG00000019731 RLG00000031025 RLG00000031364
rosa_multiflora	Rmu_sc0002475.1_g000024 Rmu_sc0003884.1_g000003 Rmu_sc0039919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069670 Rroxscaffold_1G00073480 Rroxscaffold_2G00106360
rosa_rugosa	Rorug02G0350800 Rorug04G0421100
rosa_samantha	Rh2AG398500 Rh2BG409300 Rh2CG383700 Rh2CG385300 Rh2DG418800 Rh5AG049000 Rh5BG021300 Rh5BG048200 Rh5CG056400 Rh5DG047300
rosa_wichuraiana	Rw2G032470 Rw5G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	53
AclWI	GGATC	1 cut(s)	285
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	4 cut(s)	160, 224, 431, 494
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	7 cut(s)	92, 227, 289, 377, 434, 472, 490
AluI	AGCT	7 cut(s)	92, 227, 289, 377, 434, 472, 490
AlwI	GGATC	1 cut(s)	285
AlwNI	CAGNNNCTG	1 cut(s)	460
Ama87I	CYCGRG	2 cut(s)	139, 234
Aor13HI	TCCGGA	1 cut(s)	53
AoxI	GGCC	1 cut(s)	142
ApaI	GGGCCC	1 cut(s)	146
ApeKI	GCWGC	3 cut(s)	42, 451, 460
AspS9I	GGNCC	2 cut(s)	142, 143
AsuHPI	GGTGA	1 cut(s)	218
AsuII	TTCGAA	1 cut(s)	382
AvaI	CYCGRG	2 cut(s)	139, 234
BaeGI	GKGCMC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	146
BbvI	GCAGC	3 cut(s)	54, 447, 463
BcgI	CGANNNNNNTGC	2 cut(s)	322, 356
BciT130I	CCWGG	1 cut(s)	119
BclI	TGATCA	1 cut(s)	268
BisI	GCNGC	3 cut(s)	43, 452, 461
BlsI	GCNGC	3 cut(s)	44, 453, 462
Bme1390I	CCNGG	1 cut(s)	119
BmeT110I	CYCGRG	2 cut(s)	139, 234
BmgT120I	GGNCC	2 cut(s)	142, 143
BmiI	GGNNCC	2 cut(s)	144, 145
BmrFI	CCNGG	1 cut(s)	119
Bpu14I	TTCGAA	1 cut(s)	382
BsaBI	GATNNNNATC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	233, 446
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse8I	GATNNNNATC	1 cut(s)	113
BseAI	TCCGGA	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	2 cut(s)	233, 446
BseGI	GGATG	3 cut(s)	127, 427, 562
BseJI	GATNNNNATC	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseRI	GAGGAG	7 cut(s)	72, 75, 78, 81, 84, 140, 184
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	3 cut(s)	54, 447, 463
BshFI	GGCC	1 cut(s)	144
BsiHKCI	CYCGRG	2 cut(s)	139, 234
BsiSI	CCGG	3 cut(s)	22, 54, 481
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	1 cut(s)	144
BsoBI	CYCGRG	2 cut(s)	139, 234
Bsp119I	TTCGAA	1 cut(s)	382
Bsp120I	GGGCCC	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp13I	TCCGGA	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	268, 277
BspANI	GGCC	1 cut(s)	144
BspEI	TCCGGA	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	144, 145
BspPI	GGATC	1 cut(s)	285
BspT104I	TTCGAA	1 cut(s)	382
BssECI	CCNNGG	2 cut(s)	233, 446
BssMI	GATC	2 cut(s)	268, 277
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	339
Bst6I	CTCTTC	3 cut(s)	98, 489, 535
BstAPI	GCANNNNNTGC	1 cut(s)	460
BstBI	TTCGAA	1 cut(s)	382
BstDEI	CTNAG	1 cut(s)	303
BstF5I	GGATG	3 cut(s)	127, 427, 562
BstKTI	GATC	2 cut(s)	271, 280
BstMBI	GATC	2 cut(s)	268, 277
BstMWI	GCNNNNNNNGC	4 cut(s)	440, 457, 460, 469
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	146
BstV1I	GCAGC	3 cut(s)	54, 447, 463
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	144
BtsCI	GGATG	3 cut(s)	127, 427, 562
BtsIMutI	CAGTG	2 cut(s)	32, 301
CaiI	CAGNNNCTG	1 cut(s)	460
CciI	TCATGA	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	142, 143
CviAII	CATG	2 cut(s)	272, 553
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	2 cut(s)	270, 279
DpnII	GATC	2 cut(s)	268, 277
Eam1104I	CTCTTC	3 cut(s)	98, 489, 535
EarI	CTCTTC	3 cut(s)	98, 489, 535
Eco24I	GRGCYC	1 cut(s)	146
Eco32I	GATATC	1 cut(s)	501
Eco88I	CYCGRG	2 cut(s)	139, 234
EcoO109I	RGGNCCY	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	117
EcoRV	GATATC	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	146
FaeI	CATG	2 cut(s)	275, 556
FaiI	YATR	3 cut(s)	273, 465, 554
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FatI	CATG	2 cut(s)	271, 552
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	3 cut(s)	43, 452, 461
FokI	GGATG	3 cut(s)	134, 434, 569
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	3 cut(s)	43, 452, 461
GluI	GCNGC	3 cut(s)	43, 452, 461
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	3 cut(s)	22, 54, 481
Hin1II	CATG	2 cut(s)	275, 556
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	9 cut(s)	131, 151, 241, 253, 322, 370, 404, 518, 534
HpaII	CCGG	3 cut(s)	22, 54, 481
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	2 cut(s)	32, 508
Hpy188I	TCNGA	6 cut(s)	246, 403, 438, 447, 477, 539
Hpy188III	TCNNGA	3 cut(s)	54, 236, 272
Hpy8I	GTNNAC	2 cut(s)	32, 508
HpyAV	CCTTC	2 cut(s)	71, 524
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4V	TGCA	3 cut(s)	42, 343, 463
HpyF10VI	GCNNNNNNNGC	4 cut(s)	440, 457, 460, 469
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	275, 556
Kpn2I	TCCGGA	1 cut(s)	53
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	268, 277
LmnI	GCTCC	4 cut(s)	171, 439, 448, 469
LpnPI	CCDG	6 cut(s)	35, 67, 104, 131, 387, 494
Lsp1109I	GCAGC	3 cut(s)	54, 447, 463
MalI	GATC	2 cut(s)	270, 279
MboI	GATC	2 cut(s)	268, 277
MboII	GAAGA	6 cut(s)	86, 115, 172, 506, 552, 572
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	2 cut(s)	16, 416
MlyI	GAGTC	3 cut(s)	145, 316, 413
MroI	TCCGGA	1 cut(s)	53
MseI	TTAA	2 cut(s)	249, 282
MslI	CAYNNNNRTG	1 cut(s)	37
MspI	CCGG	3 cut(s)	22, 54, 481
MspR9I	CCNGG	1 cut(s)	119
Mva1269I	GAATGC	1 cut(s)	445
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	4 cut(s)	440, 457, 460, 469
NdeII	GATC	2 cut(s)	268, 277
NlaIII	CATG	2 cut(s)	275, 556
NlaIV	GGNNCC	2 cut(s)	144, 145
NspV	TTCGAA	1 cut(s)	382
PagI	TCATGA	1 cut(s)	271
PctI	GAATGC	1 cut(s)	445
PfeI	GAWTC	6 cut(s)	131, 241, 253, 370, 518, 534
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	44, 453, 462
PleI	GAGTC	3 cut(s)	145, 316, 412
PpsI	GAGTC	3 cut(s)	145, 316, 412
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	144, 145
PspOMI	GGGCCC	1 cut(s)	142
PspPI	GGNCC	2 cut(s)	142, 143
PstNI	CAGNNNCTG	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	249, 282
SatI	GCNGC	3 cut(s)	43, 452, 461
Sau3AI	GATC	2 cut(s)	268, 277
Sau96I	GGNCC	2 cut(s)	142, 143
SchI	GAGTC	3 cut(s)	145, 316, 413
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	7 cut(s)	94, 229, 291, 379, 436, 474, 492
SfuI	TTCGAA	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	37
Sse9I	AATT	2 cut(s)	16, 416
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	339
TaqI	TCGA	4 cut(s)	88, 195, 201, 382
TasI	AATT	2 cut(s)	16, 416
TfiI	GAWTC	6 cut(s)	131, 241, 253, 370, 518, 534
Tru1I	TTAA	2 cut(s)	249, 282
Tru9I	TTAA	2 cut(s)	249, 282
TscAI	CASTG	2 cut(s)	39, 301
TseI	GCWGC	3 cut(s)	42, 451, 460
TspDTI	ATGAA	4 cut(s)	429, 510, 541, 573
TspRI	CASTG	2 cut(s)	39, 301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.