Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002768

Physical Location & Seq

Genomic Coordinates Forward (+)

94322309 .. 94322800

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00073480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGATCAGGTATATATATTTCATCATGGCTTTGGGGAGGAAGAGGATTGGAATGTCGGATGCGGAGGATTCATATTCGGGTACTGCTGAGTTGGAGCCCAATACTCCATTAAAGAAGCAGAGAAGCGAGTGTTTCGATTTCGAATCTAAACTTGAAGCTCTGCCTCAGGAGACTCTGATTAAGATTCTATGCGGAGTTGATCATGAGGATCTTAAACAGCTTTTCCATGTATCTAAGGCAATTAGAGAAGCGACTCTTATTGCGAAACAGTGGCATTTTGCTTACAGCACACCTAGAAATATTCAAGCTTTTCGAACAAATGACAATTTGGATGAGATTGAAGCTCCCAATGCTCCGAGGAAGCAGAGGCTGCATAGGGCGCTTCCGAGCCGGAAAGAGCTTGAAGAGATATCGGTTGACTTATTTGGAGGAAGGAATGAGAAAAGGCTTTCATGGATGAAGATGATGAGTGAGCAATCTGGGATTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009961 GO:0010033 GO:0010243 GO:0014070 GO:0033993 GO:0042221 GO:0042493 GO:0043200 GO:0043207 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

163

Amino Acids

18.91

Weight (kDa)

7.78

Isoelectric Point (pI)

63.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61340 AT1G61340 AT4G05010 AT4G21510 AT4G21510
fragaria_vesca	FvH4_3g04020 FvH4_3g04020
malus_domestica	MD05G1112900.v1.1 MD05G1299400.v1.1 MD05G1325400.v1.1 MD10G1303400.v1.1
prunus_persica	Prupe.4G036800_v2.0.a1
pyrus_communis	pycom05g29940 pycom10g25590
rosa_chinensis	RchiOBHm_Chr2g0138281 RchiOBHm_Chr5g0006321
rosa_laevigata	RLG00000019731 RLG00000031025 RLG00000031364
rosa_multiflora	Rmu_sc0002475.1_g000024 Rmu_sc0003884.1_g000003 Rmu_sc0039919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069670 Rroxscaffold_1G00073480 Rroxscaffold_2G00106360
rosa_rugosa	Rorug02G0350800 Rorug04G0421100
rosa_samantha	Rh2AG398500 Rh2BG409300 Rh2CG383700 Rh2CG385300 Rh2DG418800 Rh5AG049000 Rh5BG021300 Rh5BG048200 Rh5CG056400 Rh5DG047300
rosa_wichuraiana	Rw2G032470 Rw5G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	62, 192
AclWI	GGATC	1 cut(s)	216
AfaI	GTAC	1 cut(s)	82
AgsI	TTSAA	4 cut(s)	155, 305, 341, 404
AluBI	AGCT	5 cut(s)	158, 220, 308, 344, 400
AluI	AGCT	5 cut(s)	158, 220, 308, 344, 400
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	216
AlwNI	CAGNNNCTG	1 cut(s)	370
ApeKI	GCWGC	1 cut(s)	370
AspLEI	GCGC	1 cut(s)	382
AsuII	TTCGAA	2 cut(s)	141, 313
AxyI	CCTNAGG	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	357
BclI	TGATCA	2 cut(s)	3, 199
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	294
BfoI	RGCGCY	1 cut(s)	383
BisI	GCNGC	1 cut(s)	371
BlsI	GCNGC	1 cut(s)	372
BmiI	GGNNCC	1 cut(s)	96
BmsI	GCATC	1 cut(s)	49
Bpu14I	TTCGAA	2 cut(s)	141, 313
BsaJI	CCNNGG	1 cut(s)	356
Bse21I	CCTNAGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	356
BseGI	GGATG	3 cut(s)	64, 337, 462
BseMII	CTCAG	2 cut(s)	78, 179
BseXI	GCAGC	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	391
BsmAI	GTCTC	1 cut(s)	164
Bsp119I	TTCGAA	2 cut(s)	141, 313
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	3, 199, 208
BspACI	CCGC	2 cut(s)	62, 192
BspCNI	CTCAG	2 cut(s)	79, 178
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	96
BspPI	GGATC	1 cut(s)	216
BspT104I	TTCGAA	2 cut(s)	141, 313
BssECI	CCNNGG	1 cut(s)	356
BssMI	GATC	3 cut(s)	3, 199, 208
Bst4CI	ACNGT	1 cut(s)	270
Bst6I	CTCTTC	2 cut(s)	35, 399
BstAPI	GCANNNNNTGC	1 cut(s)	370
BstBI	TTCGAA	2 cut(s)	141, 313
BstDEI	CTNAG	3 cut(s)	87, 165, 234
BstF5I	GGATG	3 cut(s)	64, 337, 462
BstH2I	RGCGCY	1 cut(s)	383
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	3 cut(s)	6, 202, 211
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	3 cut(s)	3, 199, 208
BstMWI	GCNNNNNNNGC	3 cut(s)	350, 370, 379
BstV1I	GCAGC	1 cut(s)	357
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	165
BtsCI	GGATG	3 cut(s)	64, 337, 462
BtsIMutI	CAGTG	1 cut(s)	275
CaiI	CAGNNNCTG	1 cut(s)	370
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	4 cut(s)	25, 203, 227, 453
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	3 cut(s)	87, 165, 234
DpnI	GATC	3 cut(s)	5, 201, 210
DpnII	GATC	3 cut(s)	3, 199, 208
Eam1104I	CTCTTC	2 cut(s)	35, 399
EarI	CTCTTC	2 cut(s)	35, 399
Eco24I	GRGCYC	1 cut(s)	99
Eco32I	GATATC	1 cut(s)	411
Eco81I	CCTNAGG	1 cut(s)	165
EcoRV	GATATC	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	99
FaeI	CATG	4 cut(s)	28, 206, 230, 456
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FatI	CATG	4 cut(s)	24, 202, 226, 452
FbaI	TGATCA	2 cut(s)	3, 199
Fnu4HI	GCNGC	1 cut(s)	371
FokI	GGATG	3 cut(s)	71, 344, 469
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	371
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	1 cut(s)	371
HaeII	RGCGCY	1 cut(s)	383
HapII	CCGG	1 cut(s)	391
HhaI	GCGC	1 cut(s)	382
Hin1II	CATG	4 cut(s)	28, 206, 230, 456
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	306
HinfI	GANTC	5 cut(s)	68, 143, 172, 184, 253
HpaII	CCGG	1 cut(s)	391
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	4 cut(s)	58, 177, 357, 387
Hpy188III	TCNNGA	2 cut(s)	167, 203
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	1 cut(s)	426
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4V	TGCA	1 cut(s)	373
HpyF10VI	GCNNNNNNNGC	3 cut(s)	350, 370, 379
HpyF3I	CTNAG	3 cut(s)	87, 165, 234
Hsp92II	CATG	4 cut(s)	28, 206, 230, 456
HspAI	GCGC	1 cut(s)	380
Ksp22I	TGATCA	2 cut(s)	3, 199
Kzo9I	GATC	3 cut(s)	3, 199, 208
LmnI	GCTCC	3 cut(s)	94, 349, 358
LpnPI	CCDG	3 cut(s)	152, 404, 465
Lsp1109I	GCAGC	1 cut(s)	357
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	1 cut(s)	294
MalI	GATC	3 cut(s)	5, 201, 210
MboI	GATC	3 cut(s)	3, 199, 208
MboII	GAAGA	3 cut(s)	52, 416, 472
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	2 cut(s)	240, 325
MlyI	GAGTC	2 cut(s)	166, 247
MmeI	TCCRAC	2 cut(s)	36, 72
MnlI	CCTC	8 cut(s)	30, 36, 58, 174, 199, 351, 360, 422
MseI	TTAA	3 cut(s)	110, 180, 213
MspI	CCGG	1 cut(s)	391
MwoI	GCNNNNNNNGC	3 cut(s)	350, 370, 379
NdeII	GATC	3 cut(s)	3, 199, 208
NlaIII	CATG	4 cut(s)	28, 206, 230, 456
NlaIV	GGNNCC	1 cut(s)	96
NspV	TTCGAA	2 cut(s)	141, 313
PagI	TCATGA	1 cut(s)	202
PfeI	GAWTC	3 cut(s)	68, 143, 184
PkrI	GCNGC	1 cut(s)	372
PleI	GAGTC	2 cut(s)	166, 247
PpsI	GAGTC	2 cut(s)	166, 247
PspN4I	GGNNCC	1 cut(s)	96
PstNI	CAGNNNCTG	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	110, 180, 213
SatI	GCNGC	1 cut(s)	371
Sau3AI	GATC	3 cut(s)	3, 199, 208
SchI	GAGTC	2 cut(s)	166, 247
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	7 cut(s)	11, 160, 222, 295, 310, 346, 402
SfaNI	GCATC	1 cut(s)	49
SfuI	TTCGAA	2 cut(s)	141, 313
Sse9I	AATT	2 cut(s)	240, 325
SsiI	CCGC	2 cut(s)	62, 192
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	270
TaqI	TCGA	3 cut(s)	135, 141, 313
TasI	AATT	2 cut(s)	240, 325
TfiI	GAWTC	3 cut(s)	68, 143, 184
Tru1I	TTAA	3 cut(s)	110, 180, 213
Tru9I	TTAA	3 cut(s)	110, 180, 213
TscAI	CASTG	1 cut(s)	275
TseI	GCWGC	1 cut(s)	370
TspDTI	ATGAA	4 cut(s)	10, 60, 441, 473
TspRI	CASTG	1 cut(s)	275
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.