Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002768

Physical Location & Seq

Genomic Coordinates Forward (+)

27164971 .. 27165796

Gene Structure 826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g25590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCGTTGGGAAGGAAGTGCAAGAGTTGCTTGAAAACGAAGCGTGGCGGTGGCACTGTTGCGGCGGAGGCGGAGGGGATAGTGGAGTTAGGGTTTGTGAAGTACACGCGAGCTTTGGGGAGGAAGAGGATTGGGATTTCTAACAATGGCGGGGAGGCTTCGCCGGCTGATTTGTATCCCAAGACTCCATTGAAGAAGCAGCGGAGTGGGAACATGATTTGGGAATCGGAAACTGCCGCCTCCTCCGCCATAGAAGCTCTGCCTCAGGAGATTCTGATTAAGGTTGTGTGTGGAGTCGATCACGATGATTTGAAGCGGCTTTTCCGTGTATCGAAGGCGATTAGAGAAGCGACTCTGGTTGCGAAGCAGTGGCATTTTGCTTACAGCACACCTTCGAAAACCCCTGCTTTCCGAACCGCCATTGATTTATCAGATTCGAATAGCTCTCTGGACGAGATTGAAGCCCCGAATGCTCCAAAACAGTGGAGGCAGATGCACAGGAAGTTGCCTAACCAGAAGAAGCTTGCTGAGTTGTCTGTGAACTTGTTTGCCTCATGGGACGACGAAGCGGAGGAGGATCAGGGGACTCGAAAAGGGCTGTTCATGGAGGAAGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009961 GO:0010033 GO:0010243 GO:0014070 GO:0033993 GO:0042221 GO:0042493 GO:0043200 GO:0043207 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

207

Amino Acids

22.83

Weight (kDa)

8.69

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61340 AT1G61340 AT4G05010 AT4G21510 AT4G21510
fragaria_vesca	FvH4_3g04020 FvH4_3g04020
malus_domestica	MD05G1112900.v1.1 MD05G1299400.v1.1 MD05G1325400.v1.1 MD10G1303400.v1.1
prunus_persica	Prupe.4G036800_v2.0.a1
pyrus_communis	pycom05g29940 pycom10g25590
rosa_chinensis	RchiOBHm_Chr2g0138281 RchiOBHm_Chr5g0006321
rosa_laevigata	RLG00000019731 RLG00000031025 RLG00000031364
rosa_multiflora	Rmu_sc0002475.1_g000024 Rmu_sc0003884.1_g000003 Rmu_sc0039919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069670 Rroxscaffold_1G00073480 Rroxscaffold_2G00106360
rosa_rugosa	Rorug02G0350800 Rorug04G0421100
rosa_samantha	Rh2AG398500 Rh2BG409300 Rh2CG383700 Rh2CG385300 Rh2DG418800 Rh5AG049000 Rh5BG021300 Rh5BG048200 Rh5CG056400 Rh5DG047300
rosa_wichuraiana	Rw2G032470 Rw5G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	109
AclWI	GGATC	1 cut(s)	585
AfaI	GTAC	1 cut(s)	104
AgsI	TTSAA	4 cut(s)	34, 193, 313, 461
AluBI	AGCT	4 cut(s)	113, 257, 444, 523
AluI	AGCT	4 cut(s)	113, 257, 444, 523
AlwI	GGATC	1 cut(s)	585
ApeKI	GCWGC	1 cut(s)	199
AsuII	TTCGAA	2 cut(s)	395, 437
AxyI	CCTNAGG	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	211
BciVI	GTATCC	1 cut(s)	186
BfuI	GTATCC	1 cut(s)	186
BisI	GCNGC	4 cut(s)	63, 200, 237, 317
BlsI	GCNGC	4 cut(s)	64, 201, 238, 318
BmsI	GCATC	1 cut(s)	483
Bpu14I	TTCGAA	2 cut(s)	395, 437
BsaBI	GATNNNNATC	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bse118I	RCCGGY	1 cut(s)	163
Bse21I	CCTNAGG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	174
BseJI	GATNNNNATC	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	278, 519
BseRI	GAGGAG	2 cut(s)	232, 587
BseXI	GCAGC	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	164
BslFI	GGGAC	2 cut(s)	572, 598
BsmFI	GGGAC	2 cut(s)	572, 598
BsmI	GAATGC	1 cut(s)	475
Bsp119I	TTCGAA	2 cut(s)	395, 437
Bsp143I	GATC	2 cut(s)	298, 577
BspCNI	CTCAG	2 cut(s)	277, 520
BspFNI	CGCG	1 cut(s)	109
BspPI	GGATC	1 cut(s)	585
BspT104I	TTCGAA	2 cut(s)	395, 437
BsrFI	RCCGGY	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	163
BssMI	GATC	2 cut(s)	298, 577
Bst4CI	ACNGT	2 cut(s)	58, 483
Bst6I	CTCTTC	1 cut(s)	119
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstBI	TTCGAA	2 cut(s)	395, 437
BstC8I	GCNNGC	3 cut(s)	111, 165, 525
BstDEI	CTNAG	2 cut(s)	264, 528
BstFNI	CGCG	1 cut(s)	109
BstKTI	GATC	2 cut(s)	301, 580
BstMBI	GATC	2 cut(s)	298, 577
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 68, 164, 245, 254, 470
BstUI	CGCG	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	211
BstXI	CCANNNNNNTGG	1 cut(s)	483
Bsu36I	CCTNAGG	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	186
BtsI	GCAGTG	1 cut(s)	374
BtsIMutI	CAGTG	3 cut(s)	54, 374, 488
Cac8I	GCNNGC	3 cut(s)	111, 165, 525
Cfr10I	RCCGGY	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	3 cut(s)	214, 555, 604
CviJI	RGCY	9 cut(s)	113, 158, 167, 257, 319, 444, 464, 523, 598
CviKI_1	RGCY	9 cut(s)	113, 158, 167, 257, 319, 444, 464, 523, 598
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	2 cut(s)	264, 528
DpnI	GATC	2 cut(s)	300, 579
DpnII	GATC	2 cut(s)	298, 577
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EciI	GGCGGA	3 cut(s)	80, 86, 235
Eco81I	CCTNAGG	1 cut(s)	264
FaeI	CATG	3 cut(s)	217, 558, 607
FaiI	YATR	4 cut(s)	215, 251, 556, 605
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FaqI	GGGAC	2 cut(s)	572, 598
FatI	CATG	3 cut(s)	213, 554, 603
FauI	CCCGC	1 cut(s)	143
Fnu4HI	GCNGC	4 cut(s)	63, 200, 237, 317
Fsp4HI	GCNGC	4 cut(s)	63, 200, 237, 317
GluI	GCNGC	4 cut(s)	63, 200, 237, 317
HapII	CCGG	1 cut(s)	164
Hin1II	CATG	3 cut(s)	217, 558, 607
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	7 cut(s)	184, 224, 271, 294, 352, 434, 586
HpaII	CCGG	1 cut(s)	164
Hpy166II	GTNNAC	2 cut(s)	105, 541
Hpy188I	TCNGA	4 cut(s)	229, 276, 413, 433
Hpy188III	TCNNGA	3 cut(s)	266, 302, 449
Hpy8I	GTNNAC	2 cut(s)	105, 541
Hpy99I	CGWCG	1 cut(s)	566
HpyAV	CCTTC	3 cut(s)	6, 328, 402
HpyCH4III	ACNGT	2 cut(s)	58, 483
HpyCH4V	TGCA	2 cut(s)	21, 496
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 68, 164, 245, 254, 470
HpyF3I	CTNAG	2 cut(s)	264, 528
Hsp92II	CATG	3 cut(s)	217, 558, 607
KroI	GCCGGC	1 cut(s)	163
KroNI	GCCGGC	1 cut(s)	165
Kzo9I	GATC	2 cut(s)	298, 577
LmnI	GCTCC	1 cut(s)	478
LpnPI	CCDG	8 cut(s)	177, 251, 341, 417, 434, 484, 527, 566
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	483
MalI	GATC	2 cut(s)	300, 579
MboI	GATC	2 cut(s)	298, 577
MboII	GAAGA	3 cut(s)	136, 205, 529
MlyI	GAGTC	4 cut(s)	178, 303, 346, 580
MroNI	GCCGGC	1 cut(s)	163
MseI	TTAA	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	1 cut(s)	164
Mva1269I	GAATGC	1 cut(s)	475
MvnI	CGCG	1 cut(s)	109
MwoI	GCNNNNNNNGC	6 cut(s)	27, 68, 164, 245, 254, 470
NaeI	GCCGGC	1 cut(s)	165
NdeII	GATC	2 cut(s)	298, 577
NgoMIV	GCCGGC	1 cut(s)	163
NlaIII	CATG	3 cut(s)	217, 558, 607
NspV	TTCGAA	2 cut(s)	395, 437
PctI	GAATGC	1 cut(s)	475
PdiI	GCCGGC	1 cut(s)	165
PfeI	GAWTC	3 cut(s)	224, 271, 434
PkrI	GCNGC	4 cut(s)	64, 201, 238, 318
PleI	GAGTC	4 cut(s)	178, 302, 346, 580
PpsI	GAGTC	4 cut(s)	178, 302, 346, 580
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	4 cut(s)	63, 200, 237, 317
Sau3AI	GATC	2 cut(s)	298, 577
SchI	GAGTC	4 cut(s)	178, 303, 346, 580
SetI	ASST	6 cut(s)	115, 259, 285, 394, 446, 525
SfaNI	GCATC	1 cut(s)	483
SfuI	TTCGAA	2 cut(s)	395, 437
TaaI	ACNGT	2 cut(s)	58, 483
TaqI	TCGA	5 cut(s)	297, 332, 395, 437, 589
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	3 cut(s)	65, 239, 319
TfiI	GAWTC	3 cut(s)	224, 271, 434
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	3 cut(s)	61, 374, 488
TseI	GCWGC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	592
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	3 cut(s)	61, 374, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.