Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002768

Physical Location & Seq

Genomic Coordinates Forward (+)

30248345 .. 30249751

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTCATCACCCATGGCGGCACCGGTGCAGCTTCCTACCTGCGCTCTCCCTCCTCCGCGTGGATTACTGATTGATTGGTGCAAAATGGCGTTGGGAAGGAAGTGCAAGAGTTGCTTGACATCTAAGCGCGGTGCCGGCGGAGTGACGGCGGAGGCGGAGGGGACGGTGGAGTTAGGGTTTGTGAAGTACACGCGAGCTTTGGGGAGGAAGAGGATTGGGATTTCTAACAATGGCGAGGAGGATTCGCCGGCTGATTTGTATCCCAAGACTCCATTGAAGAAGCAGCGGAGTGGGGAGATGATTTGGGAGTCGGAAACTGCCGCCTCATCCGCTCTAGAAGCTTTGCCTCAGGAGATTCTGTTGAAGATTGTGTGTGGAGTCGATCACGATGATTTGAAGCAGCTTTTCCATGTATCGAAAGCAATTAGAGAAGTGACTCTGATTGCTAAGCAATGTCATTTCGCTTACAGCACGCCTTCGAAAACCCCAGCTTTCCGAACCGCCATCGATTTCTCAGATTCCAACTGCTGCCTGGACGACATTGAAGCTCCGAATGCTCCGAAACAGTGGAGGCAGATGCACAGGAAGTTGCCTAACGGGAAGAAGCTTGCTGGGTTGTCTGTGAACTTGTTTGCCTCGTGGGACGAGGAGGAGGAGGAGGAGCAGGGGACTCGAAAAGGGCTGTTCATGGAGGAAGACGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009961 GO:0010033 GO:0010243 GO:0014070 GO:0033993 GO:0042221 GO:0042493 GO:0043200 GO:0043207 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

236

Amino Acids

25.92

Weight (kDa)

5.91

Isoelectric Point (pI)

56.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61340 AT1G61340 AT4G05010 AT4G21510 AT4G21510
fragaria_vesca	FvH4_3g04020 FvH4_3g04020
malus_domestica	MD05G1112900.v1.1 MD05G1299400.v1.1 MD05G1325400.v1.1 MD10G1303400.v1.1
prunus_persica	Prupe.4G036800_v2.0.a1
pyrus_communis	pycom05g29940 pycom10g25590
rosa_chinensis	RchiOBHm_Chr2g0138281 RchiOBHm_Chr5g0006321
rosa_laevigata	RLG00000019731 RLG00000031025 RLG00000031364
rosa_multiflora	Rmu_sc0002475.1_g000024 Rmu_sc0003884.1_g000003 Rmu_sc0039919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069670 Rroxscaffold_1G00073480 Rroxscaffold_2G00106360
rosa_rugosa	Rorug02G0350800 Rorug04G0421100
rosa_samantha	Rh2AG398500 Rh2BG409300 Rh2CG383700 Rh2CG385300 Rh2DG418800 Rh5AG049000 Rh5BG021300 Rh5BG048200 Rh5CG056400 Rh5DG047300
rosa_wichuraiana	Rw2G032470 Rw5G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	47
AccB1I	GGYRCC	2 cut(s)	19, 131
AccBSI	CCGCTC	1 cut(s)	332
AccII	CGCG	3 cut(s)	58, 129, 193
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgeI	ACCGGT	1 cut(s)	22
AgsI	TTSAA	4 cut(s)	277, 364, 397, 545
AjnI	CCWGG	1 cut(s)	531
AluBI	AGCT	7 cut(s)	31, 197, 341, 403, 491, 548, 607
AluI	AGCT	7 cut(s)	31, 197, 341, 403, 491, 548, 607
ApeKI	GCWGC	4 cut(s)	28, 283, 400, 528
AsiGI	ACCGGT	1 cut(s)	22
AspLEI	GCGC	2 cut(s)	44, 129
AsuII	TTCGAA	1 cut(s)	479
AxyI	CCTNAGG	1 cut(s)	348
BanI	GGYRCC	2 cut(s)	19, 131
BauI	CACGAG	1 cut(s)	637
BbsI	GAAGAC	1 cut(s)	702
BbvI	GCAGC	4 cut(s)	40, 295, 412, 515
BccI	CCATC	1 cut(s)	512
BceAI	ACGGC	1 cut(s)	162
BcgI	CGANNNNNNTGC	2 cut(s)	653, 687
BciT130I	CCWGG	1 cut(s)	533
BciVI	GTATCC	1 cut(s)	270
BfaI	CTAG	1 cut(s)	335
BfuAI	ACCTGC	1 cut(s)	47
BfuI	GTATCC	1 cut(s)	270
BisI	GCNGC	6 cut(s)	18, 29, 284, 321, 401, 529
BlpI	GCTNAGC	1 cut(s)	447
BlsI	GCNGC	6 cut(s)	19, 30, 285, 322, 402, 530
Bme1390I	CCNGG	1 cut(s)	533
BmiI	GGNNCC	2 cut(s)	21, 133
BmrFI	CCNGG	1 cut(s)	533
BmsI	GCATC	1 cut(s)	567
BpiI	GAAGAC	1 cut(s)	702
Bpu1102I	GCTNAGC	1 cut(s)	447
Bpu14I	TTCGAA	1 cut(s)	479
Bsa29I	ATCGAT	1 cut(s)	507
BsaBI	GATNNNNATC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	12
BsaWI	WCCGGW	1 cut(s)	22
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 344, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse118I	RCCGGY	3 cut(s)	22, 134, 247
Bse21I	CCTNAGG	1 cut(s)	348
Bse3DI	GCAATG	1 cut(s)	458
Bse8I	GATNNNNATC	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	533
BseCI	ATCGAT	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	326
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMI	GCAATG	1 cut(s)	458
BseMII	CTCAG	2 cut(s)	362, 528
BseRI	GAGGAG	7 cut(s)	42, 251, 662, 665, 668, 671, 674
BseXI	GCAGC	4 cut(s)	40, 295, 412, 515
BseYI	CCCAGC	2 cut(s)	487, 611
BsgI	GTGCAG	1 cut(s)	47
Bsh1236I	CGCG	3 cut(s)	58, 129, 193
BshNI	GGYRCC	2 cut(s)	19, 131
BshTI	ACCGGT	1 cut(s)	22
BshVI	ATCGAT	1 cut(s)	507
BsiSI	CCGG	3 cut(s)	23, 135, 248
BslFI	GGGAC	3 cut(s)	175, 656, 682
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmFI	GGGAC	3 cut(s)	175, 656, 682
BsmI	GAATGC	1 cut(s)	559
Bsp119I	TTCGAA	1 cut(s)	479
Bsp143I	GATC	1 cut(s)	382
Bsp1720I	GCTNAGC	1 cut(s)	447
Bsp19I	CCATGG	1 cut(s)	12
BspCNI	CTCAG	2 cut(s)	361, 527
BspDI	ATCGAT	1 cut(s)	507
BspFNI	CGCG	3 cut(s)	58, 129, 193
BspLI	GGNNCC	2 cut(s)	21, 133
BspMI	ACCTGC	1 cut(s)	47
BspT104I	TTCGAA	1 cut(s)	479
BspT107I	GGYRCC	2 cut(s)	19, 131
BsrBI	CCGCTC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	458
BsrFI	RCCGGY	3 cut(s)	22, 134, 247
BssAI	RCCGGY	3 cut(s)	22, 134, 247
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	1 cut(s)	382
BssSI	CACGAG	1 cut(s)	637
BssT1I	CCWWGG	1 cut(s)	12
Bst2BI	CACGAG	1 cut(s)	637
Bst2UI	CCWGG	1 cut(s)	533
Bst4CI	ACNGT	2 cut(s)	166, 567
Bst6I	CTCTTC	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	111
BstBI	TTCGAA	1 cut(s)	479
BstC8I	GCNNGC	5 cut(s)	136, 195, 249, 473, 609
BstDEI	CTNAG	4 cut(s)	123, 348, 447, 514
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	326
BstFNI	CGCG	3 cut(s)	58, 129, 193
BstHHI	GCGC	2 cut(s)	44, 129
BstKTI	GATC	1 cut(s)	385
BstMBI	GATC	1 cut(s)	382
BstMWI	GCNNNNNNNGC	5 cut(s)	111, 135, 329, 338, 554
BstNI	CCWGG	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	531
BstUI	CGCG	3 cut(s)	58, 129, 193
BstV1I	GCAGC	4 cut(s)	40, 295, 412, 515
BstV2I	GAAGAC	1 cut(s)	702
Bsu15I	ATCGAT	1 cut(s)	507
Bsu36I	CCTNAGG	1 cut(s)	348
BsuI	GTATCC	1 cut(s)	270
BsuTUI	ATCGAT	1 cut(s)	507
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	326
BtsIMutI	CAGTG	1 cut(s)	572
BveI	ACCTGC	1 cut(s)	47
Cac8I	GCNNGC	5 cut(s)	136, 195, 249, 473, 609
CfoI	GCGC	2 cut(s)	44, 129
Cfr10I	RCCGGY	3 cut(s)	22, 134, 247
ClaI	ATCGAT	1 cut(s)	507
Csp6I	GTAC	1 cut(s)	187
CspAI	ACCGGT	1 cut(s)	22
CviAII	CATG	3 cut(s)	13, 410, 688
CviJI	RGCY	9 cut(s)	31, 197, 251, 341, 403, 491, 548, 607, 682
CviKI_1	RGCY	9 cut(s)	31, 197, 251, 341, 403, 491, 548, 607, 682
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	4 cut(s)	123, 348, 447, 514
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
EciI	GGCGGA	3 cut(s)	153, 164, 170
Eco130I	CCWWGG	1 cut(s)	12
Eco81I	CCTNAGG	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	531
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	3 cut(s)	16, 413, 691
FaiI	YATR	3 cut(s)	14, 411, 689
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FaqI	GGGAC	3 cut(s)	175, 656, 682
FatI	CATG	3 cut(s)	12, 409, 687
Fnu4HI	GCNGC	6 cut(s)	18, 29, 284, 321, 401, 529
FokI	GGATG	1 cut(s)	313
Fsp4HI	GCNGC	6 cut(s)	18, 29, 284, 321, 401, 529
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	2 cut(s)	43, 128
GluI	GCNGC	6 cut(s)	18, 29, 284, 321, 401, 529
GsaI	CCCAGC	2 cut(s)	491, 615
HapII	CCGG	3 cut(s)	23, 135, 248
HhaI	GCGC	2 cut(s)	44, 129
Hin1II	CATG	3 cut(s)	16, 413, 691
Hin6I	GCGC	2 cut(s)	42, 127
HinP1I	GCGC	2 cut(s)	42, 127
HindIII	AAGCTT	2 cut(s)	339, 605
HinfI	GANTC	8 cut(s)	242, 268, 308, 355, 378, 436, 518, 670
HpaII	CCGG	3 cut(s)	23, 135, 248
Hpy166II	GTNNAC	2 cut(s)	189, 625
Hpy188I	TCNGA	6 cut(s)	313, 441, 497, 517, 552, 561
Hpy188III	TCNNGA	3 cut(s)	335, 350, 386
Hpy8I	GTNNAC	2 cut(s)	189, 625
HpyAV	CCTTC	2 cut(s)	90, 486
HpyCH4III	ACNGT	2 cut(s)	166, 567
HpyCH4V	TGCA	4 cut(s)	28, 81, 105, 580
HpyF10VI	GCNNNNNNNGC	5 cut(s)	111, 135, 329, 338, 554
HpyF3I	CTNAG	4 cut(s)	123, 348, 447, 514
Hsp92II	CATG	3 cut(s)	16, 413, 691
HspAI	GCGC	2 cut(s)	42, 127
KroI	GCCGGC	2 cut(s)	134, 247
KroNI	GCCGGC	2 cut(s)	136, 249
Kzo9I	GATC	1 cut(s)	382
LmnI	GCTCC	3 cut(s)	553, 562, 661
Lsp1109I	GCAGC	4 cut(s)	40, 295, 412, 515
LweI	GCATC	1 cut(s)	567
MaeI	CTAG	1 cut(s)	335
MaeIII	GTNAC	2 cut(s)	142, 433
MalI	GATC	1 cut(s)	384
MbiI	CCGCTC	1 cut(s)	332
MboI	GATC	1 cut(s)	382
MboII	GAAGA	5 cut(s)	220, 289, 376, 613, 707
MluCI	AATT	1 cut(s)	423
MlyI	GAGTC	5 cut(s)	262, 317, 387, 430, 664
MmeI	TCCRAC	2 cut(s)	291, 546
MroNI	GCCGGC	2 cut(s)	134, 247
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	3 cut(s)	23, 135, 248
MspR9I	CCNGG	1 cut(s)	533
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	1 cut(s)	533
MvnI	CGCG	3 cut(s)	58, 129, 193
MwoI	GCNNNNNNNGC	5 cut(s)	111, 135, 329, 338, 554
NaeI	GCCGGC	2 cut(s)	136, 249
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	1 cut(s)	382
NgoMIV	GCCGGC	2 cut(s)	134, 247
NlaIII	CATG	3 cut(s)	16, 413, 691
NlaIV	GGNNCC	2 cut(s)	21, 133
NmuCI	GTSAC	2 cut(s)	142, 433
NspV	TTCGAA	1 cut(s)	479
PctI	GAATGC	1 cut(s)	559
PdiI	GCCGGC	2 cut(s)	136, 249
PfeI	GAWTC	3 cut(s)	242, 355, 518
PinAI	ACCGGT	1 cut(s)	22
PkrI	GCNGC	6 cut(s)	19, 30, 285, 322, 402, 530
PleI	GAGTC	5 cut(s)	262, 316, 386, 430, 664
PpsI	GAGTC	5 cut(s)	262, 316, 386, 430, 664
Psp6I	CCWGG	1 cut(s)	531
PspFI	CCCAGC	2 cut(s)	487, 611
PspGI	CCWGG	1 cut(s)	531
PspN4I	GGNNCC	2 cut(s)	21, 133
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SatI	GCNGC	6 cut(s)	18, 29, 284, 321, 401, 529
Sau3AI	GATC	1 cut(s)	382
SchI	GAGTC	5 cut(s)	262, 317, 387, 430, 664
ScrFI	CCNGG	1 cut(s)	533
SetI	ASST	8 cut(s)	33, 41, 199, 343, 405, 493, 550, 609
SfaNI	GCATC	1 cut(s)	567
SfuI	TTCGAA	1 cut(s)	479
SgrAI	CRCCGGYG	1 cut(s)	22
Sse9I	AATT	1 cut(s)	423
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	531
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	166, 567
TaqI	TCGA	5 cut(s)	381, 416, 479, 507, 673
TasI	AATT	1 cut(s)	423
TatI	WGTACW	1 cut(s)	186
TauI	GCSGC	2 cut(s)	20, 323
TfiI	GAWTC	3 cut(s)	242, 355, 518
TscAI	CASTG	1 cut(s)	572
TseFI	GTSAC	2 cut(s)	142, 433
TseI	GCWGC	4 cut(s)	28, 283, 400, 528
Tsp45I	GTSAC	2 cut(s)	142, 433
TspDTI	ATGAA	1 cut(s)	676
TspRI	CASTG	1 cut(s)	572
XbaI	TCTAGA	1 cut(s)	334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.