Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002768

Physical Location & Seq

Genomic Coordinates Reverse (-)

56079303 .. 56080056

Gene Structure 754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019731

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCTTTGGGAAAGAATGGCCGGAGTAGTTCACTGAAATGCAGCGTTTCGTCCGGAGGAGGAGGAGAAGAAGGGTTTGTTCGAGCTTTGGGGAGGAAGAGGATAGAAATCCCGGATGTGGAGGATTCCTATTCGGGCCCCAAGACTCCATTGAAGAAGCAGAGGAGCGAGTGTTTCGCTTTTGATTTCGATTTCGAGGGTGAAATTTCTAAACTTGAAGCTCTGCCTCGGGAGATTCTGATTAAGATTCTGTGTGGAGTTGATCATGAGGATCTTAAACAGCTCTTCAGTGTATCTAAGGCGATTAGAGAAGCAACTCTTATTGCGAGACAGTTGCATTTTGCTTACAGCACACCAAGAAAGATTCCAGCTTTTCGAACCAAGATTGATTTTTCGGAGTCAAATGATGAATTGGATGAGATTGAAGCTCCGAATGCTCCGAGGCAGCAGAGGCTGCATAGGGTGCTTCCGAGCCGGAAAAAGCTTGAAGAGATATCTGTTAACTTATTGGATTCATTGGAGGAAGGAATCAGAAGAGGGCTTTTCATGGATGAAGATGATGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009961 GO:0010033 GO:0010243 GO:0014070 GO:0033993 GO:0042221 GO:0042493 GO:0043200 GO:0043207 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

190

Amino Acids

21.31

Weight (kDa)

5.44

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61340 AT1G61340 AT4G05010 AT4G21510 AT4G21510
fragaria_vesca	FvH4_3g04020 FvH4_3g04020
malus_domestica	MD05G1112900.v1.1 MD05G1299400.v1.1 MD05G1325400.v1.1 MD10G1303400.v1.1
prunus_persica	Prupe.4G036800_v2.0.a1
pyrus_communis	pycom05g29940 pycom10g25590
rosa_chinensis	RchiOBHm_Chr2g0138281 RchiOBHm_Chr5g0006321
rosa_laevigata	RLG00000019731 RLG00000031025 RLG00000031364
rosa_multiflora	Rmu_sc0002475.1_g000024 Rmu_sc0003884.1_g000003 Rmu_sc0039919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069670 Rroxscaffold_1G00073480 Rroxscaffold_2G00106360
rosa_rugosa	Rorug02G0350800 Rorug04G0421100
rosa_samantha	Rh2AG398500 Rh2BG409300 Rh2CG383700 Rh2CG385300 Rh2DG418800 Rh5AG049000 Rh5BG021300 Rh5BG048200 Rh5CG056400 Rh5DG047300
rosa_wichuraiana	Rw2G032470 Rw5G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	53
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	1 cut(s)	19
AcsI	RAATTY	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	4 cut(s)	154, 218, 425, 488
AluBI	AGCT	6 cut(s)	86, 221, 283, 371, 428, 484
AluI	AGCT	6 cut(s)	86, 221, 283, 371, 428, 484
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	1 cut(s)	279
AlwNI	CAGNNNCTG	1 cut(s)	454
Ama87I	CYCGRG	1 cut(s)	228
Aor13HI	TCCGGA	1 cut(s)	53
AoxI	GGCC	2 cut(s)	19, 136
ApaI	GGGCCC	1 cut(s)	140
ApeKI	GCWGC	3 cut(s)	42, 445, 454
ApoI	RAATTY	1 cut(s)	204
AspS9I	GGNCC	2 cut(s)	136, 137
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	212
AsuII	TTCGAA	1 cut(s)	376
AvaI	CYCGRG	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	140
BbvI	GCAGC	3 cut(s)	54, 441, 457
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BclI	TGATCA	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	322
BisI	GCNGC	3 cut(s)	43, 446, 455
BlsI	GCNGC	3 cut(s)	44, 447, 456
Bme1390I	CCNGG	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	136, 137
BmiI	GGNNCC	2 cut(s)	138, 139
BmrFI	CCNGG	1 cut(s)	113
Bpu14I	TTCGAA	1 cut(s)	376
BpuMI	CCSGG	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	227, 440
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse8I	GATNNNNATC	1 cut(s)	107
BseAI	TCCGGA	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	227, 440
BseGI	GGATG	3 cut(s)	121, 421, 556
BseJI	GATNNNNATC	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseRI	GAGGAG	4 cut(s)	72, 75, 78, 178
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	3 cut(s)	54, 441, 457
BshFI	GGCC	2 cut(s)	21, 138
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	4 cut(s)	22, 54, 113, 475
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	2 cut(s)	21, 138
BsoBI	CYCGRG	1 cut(s)	228
Bsp119I	TTCGAA	1 cut(s)	376
Bsp120I	GGGCCC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp13I	TCCGGA	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	262, 271
BspANI	GGCC	2 cut(s)	21, 138
BspEI	TCCGGA	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	138, 139
BspPI	GGATC	1 cut(s)	279
BspQI	GCTCTTC	1 cut(s)	290
BspT104I	TTCGAA	1 cut(s)	376
BssECI	CCNNGG	2 cut(s)	227, 440
BssMI	GATC	2 cut(s)	262, 271
Bst4CI	ACNGT	1 cut(s)	333
Bst6I	CTCTTC	4 cut(s)	92, 290, 483, 529
BstAPI	GCANNNNNTGC	2 cut(s)	454, 463
BstBI	TTCGAA	1 cut(s)	376
BstDEI	CTNAG	1 cut(s)	297
BstF5I	GGATG	3 cut(s)	121, 421, 556
BstKTI	GATC	2 cut(s)	265, 274
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	2 cut(s)	262, 271
BstMWI	GCNNNNNNNGC	4 cut(s)	434, 451, 454, 463
BstSCI	CCNGG	1 cut(s)	111
BstSLI	GKGCMC	1 cut(s)	140
BstV1I	GCAGC	3 cut(s)	54, 441, 457
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	21, 138
BtsCI	GGATG	3 cut(s)	121, 421, 556
BtsIMutI	CAGTG	2 cut(s)	32, 295
CaiI	CAGNNNCTG	1 cut(s)	454
CciI	TCATGA	1 cut(s)	265
Cfr13I	GGNCC	2 cut(s)	136, 137
CviAII	CATG	2 cut(s)	266, 547
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	2 cut(s)	264, 273
DpnII	GATC	2 cut(s)	262, 271
EaeI	YGGCCR	1 cut(s)	19
Eam1104I	CTCTTC	4 cut(s)	92, 290, 483, 529
EarI	CTCTTC	4 cut(s)	92, 290, 483, 529
Eco24I	GRGCYC	1 cut(s)	140
Eco32I	GATATC	1 cut(s)	495
Eco57I	CTGAAG	1 cut(s)	271
Eco88I	CYCGRG	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRV	GATATC	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	140
FaeI	CATG	2 cut(s)	269, 550
FaiI	YATR	3 cut(s)	267, 459, 548
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	2 cut(s)	265, 546
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	3 cut(s)	43, 446, 455
FokI	GGATG	3 cut(s)	128, 428, 563
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	3 cut(s)	43, 446, 455
GluI	GCNGC	3 cut(s)	43, 446, 455
HaeIII	GGCC	2 cut(s)	21, 138
HapII	CCGG	4 cut(s)	22, 54, 113, 475
Hin1II	CATG	2 cut(s)	269, 550
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	8 cut(s)	125, 145, 235, 247, 364, 398, 512, 528
HpaI	GTTAAC	1 cut(s)	502
HpaII	CCGG	4 cut(s)	22, 54, 113, 475
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	32, 502
Hpy188I	TCNGA	6 cut(s)	240, 397, 432, 441, 471, 533
Hpy188III	TCNNGA	3 cut(s)	54, 230, 266
Hpy8I	GTNNAC	2 cut(s)	32, 502
HpyAV	CCTTC	2 cut(s)	65, 518
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4V	TGCA	3 cut(s)	42, 337, 457
HpyF10VI	GCNNNNNNNGC	4 cut(s)	434, 451, 454, 463
HpyF3I	CTNAG	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	269, 550
Kpn2I	TCCGGA	1 cut(s)	53
Ksp22I	TGATCA	1 cut(s)	262
KspAI	GTTAAC	1 cut(s)	502
Kzo9I	GATC	2 cut(s)	262, 271
LguI	GCTCTTC	1 cut(s)	290
LmnI	GCTCC	3 cut(s)	165, 433, 442
LpnPI	CCDG	5 cut(s)	35, 67, 126, 381, 488
Lsp1109I	GCAGC	3 cut(s)	54, 441, 457
MalI	GATC	2 cut(s)	264, 273
MboI	GATC	2 cut(s)	262, 271
MboII	GAAGA	7 cut(s)	80, 109, 166, 277, 500, 546, 566
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	2 cut(s)	204, 410
MlyI	GAGTC	2 cut(s)	139, 407
MroI	TCCGGA	1 cut(s)	53
MseI	TTAA	3 cut(s)	243, 276, 501
MslI	CAYNNNNRTG	1 cut(s)	37
MspI	CCGG	4 cut(s)	22, 54, 113, 475
MspR9I	CCNGG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	439
MwoI	GCNNNNNNNGC	4 cut(s)	434, 451, 454, 463
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	2 cut(s)	262, 271
NlaIII	CATG	2 cut(s)	269, 550
NlaIV	GGNNCC	2 cut(s)	138, 139
NspV	TTCGAA	1 cut(s)	376
PagI	TCATGA	1 cut(s)	265
PciSI	GCTCTTC	1 cut(s)	290
PctI	GAATGC	1 cut(s)	439
PfeI	GAWTC	6 cut(s)	125, 235, 247, 364, 512, 528
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	3 cut(s)	44, 447, 456
PleI	GAGTC	2 cut(s)	139, 406
PpsI	GAGTC	2 cut(s)	139, 406
PspN4I	GGNNCC	2 cut(s)	138, 139
PspOMI	GGGCCC	1 cut(s)	136
PspPI	GGNCC	2 cut(s)	136, 137
PstNI	CAGNNNCTG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	37
SapI	GCTCTTC	1 cut(s)	290
SaqAI	TTAA	3 cut(s)	243, 276, 501
SatI	GCNGC	3 cut(s)	43, 446, 455
Sau3AI	GATC	2 cut(s)	262, 271
Sau96I	GGNCC	2 cut(s)	136, 137
SchI	GAGTC	2 cut(s)	139, 407
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	6 cut(s)	88, 223, 285, 373, 430, 486
SfuI	TTCGAA	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	37
Sse9I	AATT	2 cut(s)	204, 410
StyD4I	CCNGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	333
TaqI	TCGA	4 cut(s)	82, 189, 195, 376
TasI	AATT	2 cut(s)	204, 410
TfiI	GAWTC	6 cut(s)	125, 235, 247, 364, 512, 528
Tru1I	TTAA	3 cut(s)	243, 276, 501
Tru9I	TTAA	3 cut(s)	243, 276, 501
TscAI	CASTG	2 cut(s)	39, 295
TseI	GCWGC	3 cut(s)	42, 445, 454
TspDTI	ATGAA	4 cut(s)	423, 504, 535, 567
TspRI	CASTG	2 cut(s)	39, 295
XapI	RAATTY	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.