Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002768

Physical Location & Seq

Genomic Coordinates Forward (+)

23139754 .. 23140800

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1112900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCGTTGGGAAAGAAGTGCAAGAGTTGCTTGAAAGCGAAGCGTGGCAGCGGCGGTGCTGTTGCGGCGGAGGCGGAGCCGATGATGGAGTTAGGGTTTGTGAAGTACACGCGAGCTTTGGGGAGGAAGAGGATTGGGATTTCTAACAATGGCGAGGAGGCATCGCCGGCTGATTTGTATCCCAATACTCCATTGAAGAAGCAGCGGAGTGGGAAGATGATTTGGGAATCGAAACTGCCGCCTCCTCCGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009961 GO:0010033 GO:0010243 GO:0014070 GO:0033993 GO:0042221 GO:0042493 GO:0043200 GO:0043207 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

85

Amino Acids

9.04

Weight (kDa)

9.95

Isoelectric Point (pI)

52.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61340 AT1G61340 AT4G05010 AT4G21510 AT4G21510
fragaria_vesca	FvH4_3g04020 FvH4_3g04020
malus_domestica	MD05G1112900.v1.1 MD05G1299400.v1.1 MD05G1325400.v1.1 MD10G1303400.v1.1
prunus_persica	Prupe.4G036800_v2.0.a1
pyrus_communis	pycom05g29940 pycom10g25590
rosa_chinensis	RchiOBHm_Chr2g0138281 RchiOBHm_Chr5g0006321
rosa_laevigata	RLG00000019731 RLG00000031025 RLG00000031364
rosa_multiflora	Rmu_sc0002475.1_g000024 Rmu_sc0003884.1_g000003 Rmu_sc0039919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069670 Rroxscaffold_1G00073480 Rroxscaffold_2G00106360
rosa_rugosa	Rorug02G0350800 Rorug04G0421100
rosa_samantha	Rh2AG398500 Rh2BG409300 Rh2CG383700 Rh2CG385300 Rh2DG418800 Rh5AG049000 Rh5BG021300 Rh5BG048200 Rh5CG056400 Rh5DG047300
rosa_wichuraiana	Rw2G032470 Rw5G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	112
AciI	CCGC	8 cut(s)	51, 54, 65, 68, 74, 205, 239, 248
AfaI	GTAC	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	34, 196
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
ApeKI	GCWGC	2 cut(s)	48, 202
BbvI	GCAGC	2 cut(s)	60, 214
BccI	CCATC	1 cut(s)	79
BciVI	GTATCC	1 cut(s)	189
BfaI	CTAG	1 cut(s)	253
BfuI	GTATCC	1 cut(s)	189
BisI	GCNGC	5 cut(s)	49, 52, 66, 203, 239
BlsI	GCNGC	5 cut(s)	50, 53, 67, 204, 240
BmiI	GGNNCC	1 cut(s)	78
BmsI	GCATC	1 cut(s)	170
BsaBI	GATNNNNATC	1 cut(s)	177
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bse118I	RCCGGY	1 cut(s)	166
Bse8I	GATNNNNATC	1 cut(s)	177
BseJI	GATNNNNATC	1 cut(s)	177
BseRI	GAGGAG	2 cut(s)	170, 234
BseXI	GCAGC	2 cut(s)	60, 214
Bsh1236I	CGCG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	167
BspACI	CCGC	8 cut(s)	51, 54, 65, 68, 74, 205, 239, 248
BspFNI	CGCG	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	166
BssAI	RCCGGY	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	122
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	114, 168
BstFNI	CGCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 65, 71, 167, 247
BstUI	CGCG	1 cut(s)	112
BstV1I	GCAGC	2 cut(s)	60, 214
BsuI	GTATCC	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	114, 168
Cfr10I	RCCGGY	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	106
CviJI	RGCY	3 cut(s)	79, 116, 170
CviKI_1	RGCY	3 cut(s)	79, 116, 170
CviQI	GTAC	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	3 cut(s)	83, 89, 237
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
Fnu4HI	GCNGC	5 cut(s)	49, 52, 66, 203, 239
Fsp4HI	GCNGC	5 cut(s)	49, 52, 66, 203, 239
FspBI	CTAG	1 cut(s)	253
GluI	GCNGC	5 cut(s)	49, 52, 66, 203, 239
HapII	CCGG	1 cut(s)	167
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	108
Hpy8I	GTNNAC	1 cut(s)	108
HpyCH4V	TGCA	1 cut(s)	21
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 65, 71, 167, 247
KroI	GCCGGC	1 cut(s)	166
KroNI	GCCGGC	1 cut(s)	168
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	1 cut(s)	180
Lsp1109I	GCAGC	2 cut(s)	60, 214
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	1 cut(s)	253
MboII	GAAGA	3 cut(s)	139, 208, 226
MnlI	CCTC	7 cut(s)	64, 117, 123, 148, 151, 252, 255
MroNI	GCCGGC	1 cut(s)	166
MspA1I	CMGCKG	2 cut(s)	51, 205
MspI	CCGG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	112
MwoI	GCNNNNNNNGC	5 cut(s)	27, 65, 71, 167, 247
NaeI	GCCGGC	1 cut(s)	168
NgoMIV	GCCGGC	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	78
PdiI	GCCGGC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	5 cut(s)	50, 53, 67, 204, 240
PspN4I	GGNNCC	1 cut(s)	78
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SatI	GCNGC	5 cut(s)	49, 52, 66, 203, 239
SetI	ASST	1 cut(s)	118
SfaNI	GCATC	1 cut(s)	170
SgeI	CNNG	8 cut(s)	34, 43, 56, 121, 123, 125, 166, 179
SsiI	CCGC	8 cut(s)	51, 54, 65, 68, 74, 205, 239, 248
SspMI	CTAG	1 cut(s)	253
TaqI	TCGA	1 cut(s)	230
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	3 cut(s)	54, 68, 241
TfiI	GAWTC	1 cut(s)	227
TseI	GCWGC	2 cut(s)	48, 202
XspI	CTAG	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.