Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002768

Physical Location & Seq

Genomic Coordinates Reverse (-)

3928138 .. 3928894

Gene Structure 757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG047300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTTTGGGGAAGAAGTGCAGGAGTAGTTTACTGAAACGCAGCGTTTCGTTCGGAGGAGGAGAAGGGTTTGTTCGAGCTTTGGGGAGGAAGAGGATAGAAATCCCGGATGCGGAGGATTCGTATTCGGGTTTGAGCCCCAAGACTCCATTGAAGAAGCAGAGGAGCGAGTGTTTCGCTTTCGATTTCGATTTCGAGGGTGAAAGTTCTAAACTTGAAGCTCTGCCTCAGGAGATTCTGATTAAGATTCTGTGTGGAGTTGATCATGAGGATCTTAAACAGCTGTTCCATGTATCTAAGGCGGTTAGAGAAGCGACTCTTATTGCAAAACAGTTGCATTTTGCTTACAGCACACCTAGAAAGATTCTAGCTTTTCGAACCAAGATTGATTTTTCGGAGTCAAATGATGAATTGGAAGAGATTGAAGCTCCGAATGCTCCGAGGCAGCAGAGGCTGCATAGGGCGCTGCCGAGCCGGAAAAAGCTTGAAGAGATATCGGTTAACTTATTGGATTCATTGGAGGATGGAATGAGAAGAGGGCTTTTCATGGATGAAGATGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009961 GO:0010033 GO:0010243 GO:0014070 GO:0033993 GO:0042221 GO:0042493 GO:0043200 GO:0043207 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

188

Amino Acids

21.34

Weight (kDa)

6.15

Isoelectric Point (pI)

62.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61340 AT1G61340 AT4G05010 AT4G21510 AT4G21510
fragaria_vesca	FvH4_3g04020 FvH4_3g04020
malus_domestica	MD05G1112900.v1.1 MD05G1299400.v1.1 MD05G1325400.v1.1 MD10G1303400.v1.1
prunus_persica	Prupe.4G036800_v2.0.a1
pyrus_communis	pycom05g29940 pycom10g25590
rosa_chinensis	RchiOBHm_Chr2g0138281 RchiOBHm_Chr5g0006321
rosa_laevigata	RLG00000019731 RLG00000031025 RLG00000031364
rosa_multiflora	Rmu_sc0002475.1_g000024 Rmu_sc0003884.1_g000003 Rmu_sc0039919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069670 Rroxscaffold_1G00073480 Rroxscaffold_2G00106360
rosa_rugosa	Rorug02G0350800 Rorug04G0421100
rosa_samantha	Rh2AG398500 Rh2BG409300 Rh2CG383700 Rh2CG385300 Rh2DG418800 Rh5AG049000 Rh5BG021300 Rh5BG048200 Rh5CG056400 Rh5DG047300
rosa_wichuraiana	Rw2G032470 Rw5G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	113, 302
AclWI	GGATC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	4 cut(s)	154, 218, 425, 488
AluBI	AGCT	6 cut(s)	80, 221, 283, 371, 428, 484
AluI	AGCT	6 cut(s)	80, 221, 283, 371, 428, 484
AlwI	GGATC	1 cut(s)	279
AlwNI	CAGNNNCTG	1 cut(s)	454
ApeKI	GCWGC	4 cut(s)	42, 445, 454, 466
AspLEI	GCGC	1 cut(s)	466
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	212
AsuII	TTCGAA	1 cut(s)	376
AxyI	CCTNAGG	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	140
BbvI	GCAGC	4 cut(s)	54, 441, 453, 457
BccI	CCATC	1 cut(s)	518
BclI	TGATCA	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	107
BfaI	CTAG	2 cut(s)	357, 368
BfoI	RGCGCY	1 cut(s)	467
BisI	GCNGC	4 cut(s)	43, 446, 455, 467
BlsI	GCNGC	4 cut(s)	44, 447, 456, 468
Bme1390I	CCNGG	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	100
Bpu14I	TTCGAA	1 cut(s)	376
BpuMI	CCSGG	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	440
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse21I	CCTNAGG	1 cut(s)	228
Bse8I	GATNNNNATC	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	440
BseGI	GGATG	3 cut(s)	115, 529, 556
BseJI	GATNNNNATC	1 cut(s)	101
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	242
BseRI	GAGGAG	3 cut(s)	72, 75, 178
BseXI	GCAGC	4 cut(s)	54, 441, 453, 457
BsgI	GTGCAG	1 cut(s)	40
BsiSI	CCGG	2 cut(s)	107, 475
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	439
Bsp119I	TTCGAA	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	262, 271
BspACI	CCGC	2 cut(s)	113, 302
BspCNI	CTCAG	1 cut(s)	241
BspHI	TCATGA	1 cut(s)	265
BspPI	GGATC	1 cut(s)	279
BspT104I	TTCGAA	1 cut(s)	376
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	2 cut(s)	262, 271
Bst4CI	ACNGT	1 cut(s)	333
Bst6I	CTCTTC	4 cut(s)	86, 411, 483, 529
BstAPI	GCANNNNNTGC	1 cut(s)	454
BstBI	TTCGAA	1 cut(s)	376
BstDEI	CTNAG	2 cut(s)	228, 297
BstF5I	GGATG	3 cut(s)	115, 529, 556
BstH2I	RGCGCY	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	2 cut(s)	265, 274
BstMBI	GATC	2 cut(s)	262, 271
BstMWI	GCNNNNNNNGC	4 cut(s)	434, 451, 454, 463
BstSCI	CCNGG	1 cut(s)	105
BstV1I	GCAGC	4 cut(s)	54, 441, 453, 457
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
Bsu36I	CCTNAGG	1 cut(s)	228
BtsCI	GGATG	3 cut(s)	115, 529, 556
CaiI	CAGNNNCTG	1 cut(s)	454
CciI	TCATGA	1 cut(s)	265
CfoI	GCGC	1 cut(s)	466
CviAII	CATG	3 cut(s)	266, 290, 547
DdeI	CTNAG	2 cut(s)	228, 297
DpnI	GATC	2 cut(s)	264, 273
DpnII	GATC	2 cut(s)	262, 271
Eam1104I	CTCTTC	4 cut(s)	86, 411, 483, 529
EarI	CTCTTC	4 cut(s)	86, 411, 483, 529
Eco24I	GRGCYC	1 cut(s)	140
Eco32I	GATATC	1 cut(s)	495
Eco81I	CCTNAGG	1 cut(s)	228
EcoRV	GATATC	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	140
FaeI	CATG	3 cut(s)	269, 293, 550
FaiI	YATR	4 cut(s)	267, 291, 459, 548
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	3 cut(s)	265, 289, 546
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	4 cut(s)	43, 446, 455, 467
FokI	GGATG	3 cut(s)	122, 536, 563
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	4 cut(s)	43, 446, 455, 467
FspBI	CTAG	2 cut(s)	357, 368
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	4 cut(s)	43, 446, 455, 467
HaeII	RGCGCY	1 cut(s)	467
HapII	CCGG	2 cut(s)	107, 475
HhaI	GCGC	1 cut(s)	466
Hin1II	CATG	3 cut(s)	269, 293, 550
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	8 cut(s)	119, 145, 235, 247, 316, 364, 398, 512
HpaI	GTTAAC	1 cut(s)	502
HpaII	CCGG	2 cut(s)	107, 475
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	32, 502
Hpy188I	TCNGA	5 cut(s)	56, 240, 397, 432, 441
Hpy188III	TCNNGA	2 cut(s)	230, 266
Hpy8I	GTNNAC	2 cut(s)	32, 502
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4V	TGCA	4 cut(s)	21, 326, 337, 457
HpyF10VI	GCNNNNNNNGC	4 cut(s)	434, 451, 454, 463
HpyF3I	CTNAG	2 cut(s)	228, 297
Hsp92II	CATG	3 cut(s)	269, 293, 550
HspAI	GCGC	1 cut(s)	464
Ksp22I	TGATCA	1 cut(s)	262
KspAI	GTTAAC	1 cut(s)	502
Kzo9I	GATC	2 cut(s)	262, 271
LmnI	GCTCC	3 cut(s)	165, 433, 442
LpnPI	CCDG	4 cut(s)	7, 120, 215, 488
Lsp1109I	GCAGC	4 cut(s)	54, 441, 453, 457
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	2 cut(s)	357, 368
MalI	GATC	2 cut(s)	264, 273
MboI	GATC	2 cut(s)	262, 271
MboII	GAAGA	7 cut(s)	25, 103, 166, 428, 500, 546, 566
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	1 cut(s)	410
MlyI	GAGTC	3 cut(s)	139, 310, 407
MseI	TTAA	3 cut(s)	243, 276, 501
MspA1I	CMGCKG	1 cut(s)	283
MspI	CCGG	2 cut(s)	107, 475
MspR9I	CCNGG	1 cut(s)	107
Mva1269I	GAATGC	1 cut(s)	439
MwoI	GCNNNNNNNGC	4 cut(s)	434, 451, 454, 463
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	2 cut(s)	262, 271
NlaIII	CATG	3 cut(s)	269, 293, 550
NmeAIII	GCCGAG	1 cut(s)	495
NspV	TTCGAA	1 cut(s)	376
PagI	TCATGA	1 cut(s)	265
PctI	GAATGC	1 cut(s)	439
PfeI	GAWTC	5 cut(s)	119, 235, 247, 364, 512
PfoI	TCCNGGA	1 cut(s)	105
PkrI	GCNGC	4 cut(s)	44, 447, 456, 468
PleI	GAGTC	3 cut(s)	139, 310, 406
PpsI	GAGTC	3 cut(s)	139, 310, 406
PstNI	CAGNNNCTG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	283
SaqAI	TTAA	3 cut(s)	243, 276, 501
SatI	GCNGC	4 cut(s)	43, 446, 455, 467
Sau3AI	GATC	2 cut(s)	262, 271
SchI	GAGTC	3 cut(s)	139, 310, 407
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	7 cut(s)	82, 223, 285, 358, 373, 430, 486
SfaNI	GCATC	1 cut(s)	100
SfuI	TTCGAA	1 cut(s)	376
Sse9I	AATT	1 cut(s)	410
SsiI	CCGC	2 cut(s)	113, 302
SspMI	CTAG	2 cut(s)	357, 368
StyD4I	CCNGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	333
TaqI	TCGA	5 cut(s)	76, 183, 189, 195, 376
TasI	AATT	1 cut(s)	410
TfiI	GAWTC	5 cut(s)	119, 235, 247, 364, 512
Tru1I	TTAA	3 cut(s)	243, 276, 501
Tru9I	TTAA	3 cut(s)	243, 276, 501
TseI	GCWGC	4 cut(s)	42, 445, 454, 466
TspDTI	ATGAA	4 cut(s)	423, 504, 535, 567
XspI	CTAG	2 cut(s)	357, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.