Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002768

Physical Location & Seq

Genomic Coordinates Reverse (-)

1466711 .. 1467178

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031025

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCGGAGGATTCATATTCGGGTACTGCTGAGTTGGAGCCCCAATACCCCATTGAAGAAGCAGAGAAGCGAGTGTTTCGATTTCAAATCTAAACTTGAAGCTCTGCCTCAGGAGACTCTGATTAAGATTCTATGCGGAGTTGATCATGAGGATCTTAAACAGCTTTTCCATGTATCTAAGGCAATTAGAGAAGCGACTCTTATTGCAAAACAGTGGCATTTTGCTTACAGCACACCTAGAAATATTCGAGCTTTTCGAACAAATGACGATTTGCATGAGATTGAAGCTCCCAATGCTCTGAGGAAGCAGAGGCTGCATAGGGCGCTTCCGAGCCGCAAAGAGCTTGAAAAGATATCGGTTGACTTATTTGGAGGAAGGAATGAGAAAAGGCTTTCATGGATGAAGATGATGAGTGATCAATCAGGGATTTTATACATGGAATTAGAAATGTCCTGTTTTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009961 GO:0010033 GO:0010243 GO:0014070 GO:0033993 GO:0042221 GO:0042493 GO:0043200 GO:0043207 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

156

Amino Acids

18.22

Weight (kDa)

9.63

Isoelectric Point (pI)

67.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61340 AT1G61340 AT4G05010 AT4G21510 AT4G21510
fragaria_vesca	FvH4_3g04020 FvH4_3g04020
malus_domestica	MD05G1112900.v1.1 MD05G1299400.v1.1 MD05G1325400.v1.1 MD10G1303400.v1.1
prunus_persica	Prupe.4G036800_v2.0.a1
pyrus_communis	pycom05g29940 pycom10g25590
rosa_chinensis	RchiOBHm_Chr2g0138281 RchiOBHm_Chr5g0006321
rosa_laevigata	RLG00000019731 RLG00000031025 RLG00000031364
rosa_multiflora	Rmu_sc0002475.1_g000024 Rmu_sc0003884.1_g000003 Rmu_sc0039919.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069670 Rroxscaffold_1G00073480 Rroxscaffold_2G00106360
rosa_rugosa	Rorug02G0350800 Rorug04G0421100
rosa_samantha	Rh2AG398500 Rh2BG409300 Rh2CG383700 Rh2CG385300 Rh2DG418800 Rh5AG049000 Rh5BG021300 Rh5BG048200 Rh5CG056400 Rh5DG047300
rosa_wichuraiana	Rw2G032470 Rw5G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	4, 135, 334
AclWI	GGATC	1 cut(s)	159
AfaI	GTAC	1 cut(s)	24
AgsI	TTSAA	5 cut(s)	55, 85, 98, 284, 347
AluBI	AGCT	5 cut(s)	101, 163, 251, 287, 343
AluI	AGCT	5 cut(s)	101, 163, 251, 287, 343
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	159
AlwNI	CAGNNNCTG	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	313, 461
AspLEI	GCGC	1 cut(s)	325
AsuII	TTCGAA	1 cut(s)	256
AxyI	CCTNAGG	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	300, 448
BclI	TGATCA	2 cut(s)	142, 415
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	326
BisI	GCNGC	3 cut(s)	314, 334, 462
BlsI	GCNGC	3 cut(s)	315, 335, 463
BmiI	GGNNCC	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	256
Bse21I	CCTNAGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	405
BseMII	CTCAG	3 cut(s)	20, 122, 290
BseXI	GCAGC	2 cut(s)	300, 448
BsmAI	GTCTC	1 cut(s)	107
Bsp119I	TTCGAA	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	142, 151, 415
BspACI	CCGC	3 cut(s)	4, 135, 334
BspCNI	CTCAG	3 cut(s)	21, 121, 291
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	38
BspPI	GGATC	1 cut(s)	159
BspT104I	TTCGAA	1 cut(s)	256
BssMI	GATC	3 cut(s)	142, 151, 415
Bst4CI	ACNGT	1 cut(s)	213
BstAPI	GCANNNNNTGC	1 cut(s)	313
BstBI	TTCGAA	1 cut(s)	256
BstDEI	CTNAG	4 cut(s)	29, 108, 177, 299
BstF5I	GGATG	1 cut(s)	405
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	3 cut(s)	145, 154, 418
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	3 cut(s)	142, 151, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 313, 322
BstV1I	GCAGC	2 cut(s)	300, 448
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	218
CaiI	CAGNNNCTG	1 cut(s)	313
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	5 cut(s)	146, 170, 275, 396, 436
CviJI	RGCY	9 cut(s)	39, 101, 163, 251, 287, 313, 333, 343, 391
CviKI_1	RGCY	9 cut(s)	39, 101, 163, 251, 287, 313, 333, 343, 391
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	4 cut(s)	29, 108, 177, 299
DpnI	GATC	3 cut(s)	144, 153, 417
DpnII	GATC	3 cut(s)	142, 151, 415
Eco24I	GRGCYC	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	354
Eco81I	CCTNAGG	1 cut(s)	108
EcoRV	GATATC	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	41
FaeI	CATG	5 cut(s)	149, 173, 278, 399, 439
FaiI	YATR	9 cut(s)	15, 133, 147, 171, 276, 318, 397, 433, 437
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FatI	CATG	5 cut(s)	145, 169, 274, 395, 435
FbaI	TGATCA	2 cut(s)	142, 415
Fnu4HI	GCNGC	3 cut(s)	314, 334, 462
FokI	GGATG	1 cut(s)	412
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	3 cut(s)	314, 334, 462
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	3 cut(s)	314, 334, 462
HaeII	RGCGCY	1 cut(s)	326
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	5 cut(s)	149, 173, 278, 399, 439
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	4 cut(s)	10, 115, 127, 196
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	3 cut(s)	120, 300, 330
Hpy188III	TCNNGA	2 cut(s)	110, 146
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	1 cut(s)	369
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4V	TGCA	3 cut(s)	206, 274, 316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 313, 322
HpyF3I	CTNAG	4 cut(s)	29, 108, 177, 299
Hsp92II	CATG	5 cut(s)	149, 173, 278, 399, 439
HspAI	GCGC	1 cut(s)	323
Ksp22I	TGATCA	2 cut(s)	142, 415
Kzo9I	GATC	3 cut(s)	142, 151, 415
LmnI	GCTCC	2 cut(s)	36, 292
LpnPI	CCDG	2 cut(s)	95, 408
Lsp1109I	GCAGC	2 cut(s)	300, 448
MaeI	CTAG	1 cut(s)	237
MalI	GATC	3 cut(s)	144, 153, 417
MboI	GATC	3 cut(s)	142, 151, 415
MboII	GAAGA	2 cut(s)	67, 415
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	2 cut(s)	183, 440
MlyI	GAGTC	2 cut(s)	109, 190
MmeI	TCCRAC	1 cut(s)	14
MnlI	CCTC	5 cut(s)	117, 142, 294, 303, 365
MseI	TTAA	2 cut(s)	123, 156
MwoI	GCNNNNNNNGC	3 cut(s)	293, 313, 322
NdeII	GATC	3 cut(s)	142, 151, 415
NlaIII	CATG	5 cut(s)	149, 173, 278, 399, 439
NlaIV	GGNNCC	1 cut(s)	38
NspV	TTCGAA	1 cut(s)	256
PagI	TCATGA	1 cut(s)	145
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PfeI	GAWTC	2 cut(s)	10, 127
PkrI	GCNGC	3 cut(s)	315, 335, 463
PleI	GAGTC	2 cut(s)	109, 190
PpsI	GAGTC	2 cut(s)	109, 190
PspN4I	GGNNCC	1 cut(s)	38
PstNI	CAGNNNCTG	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	123, 156
SatI	GCNGC	3 cut(s)	314, 334, 462
Sau3AI	GATC	3 cut(s)	142, 151, 415
SchI	GAGTC	2 cut(s)	109, 190
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	6 cut(s)	103, 165, 238, 253, 289, 345
SfuI	TTCGAA	1 cut(s)	256
Sse9I	AATT	2 cut(s)	183, 440
SsiI	CCGC	3 cut(s)	4, 135, 334
SspI	AATATT	1 cut(s)	244
SspMI	CTAG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	213
TaqI	TCGA	3 cut(s)	78, 247, 256
TasI	AATT	2 cut(s)	183, 440
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	2 cut(s)	10, 127
Tru1I	TTAA	2 cut(s)	123, 156
Tru9I	TTAA	2 cut(s)	123, 156
TscAI	CASTG	1 cut(s)	218
TseI	GCWGC	2 cut(s)	313, 461
TspDTI	ATGAA	2 cut(s)	384, 416
TspRI	CASTG	1 cut(s)	218
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.