AT4G24820

26S proteasome non-ATPase regulatory subunit 6 homolog

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
12789030 .. 12792729
3700 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24820.2

Sequence Viewer

Length: 1164 bp
ATGGACGGTGGAGCGGAAGGATCTCAGCAGCCTCACCTTATTCTAGCCAACAAGCTCTTCCTCCTCACTCATCCAGATGTTCCAGACATCGAGAAAGTCCAGCTCAAGTCTGAGGTTTTGGATTTCATCAGATCCCATGGTATGGCTCCTTTGTACGAAACCCTAATTGCCTCTTCGGTGCTGGATTTGGATCAAAGCTTGTTAGAGTCTATGCGGGCCGCTAATGAAGAGGAGCTTAAGAAGCTCGACGAGAAGATTGCAGATGCAGAAGAAAATTTGGGTGAAAGTGAAGTTCGTGAAGCTCATCTTGCTAAGGCTCTGTATTTCATCAGGATTAGTGATAAGGAGAAAGCTTTGGAGCAGCTAAAACTCACTGAAGGGAAAACTGTTGCTGTTGGACAAAAAATGGACGTGGTGTTTTATACGTTACAACTTGCTTTTTTCTATATGGACTTTGATCTGGTATCAAAGAGCATTGACAAAGCAAAAAAATTGTTTGAAGAGGGTGGTGACTGGGAGAGGAAGAACCGGCTAAAGGTCTATGAAGGTTTGTACTGCATGTCCACCAGAAATTTTAAGAAGGCTGCCAGCTTATTCCTGGATTCTATATCAACCTTCACAACATATGAAATTTTTCCATATGAGACCTTCATATTCTACACCGTCCTGACAAGCATCATAACTTTGGACAGAGTTTCCCTTAAGCAAAAGGTCGTTGATGCACCTGAGATCTTAACCGTGCTTGGGAAGATTCCATTCCTTTCTGAGTTTCTGAACTCCTTGTATGAGTGCCAGTACAAGGCGTTTTTCTCAGCATTTGCTGGAATGGCGGTGCAGATAAAGTATGACCGTTACTTGTACCCGCATTTCCGGTTCTACATGAGGGAAGTCAGAACAGTGGTGTACTCTCAGTTTTTGGAATCTTACAAAAGTGTGACAGTTGAAGCAATGGCAAAGGCCTTTGGCGTTTCTGTCGATTTCATAGACCAGGAGTTGTCGCGCTTCATTGCTGCTGGGAAGCTTCACTGTAAGATAGACAAGGTTGCAGGTGTTTTGGAGACAAACCGTCCTGATGCAAAGAATGCACTTTACCAGGCAACAATCAAGCAAGGGGATTTCTTGCTAAACCGAATCCAGAAGCTGTCTCGTGTGATCGATCTGTGA

Protein Analysis

387

Amino Acids

44.28

Weight (kDa)

5.71

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPN7 PF10602 64 - 237 3.9e-65 26S proteasome subunit RPN7
PCI PF01399 282 - 355 7.1e-17 PCI domain
RPN7_PSMD6_C PF21154 364 - 385 7.6e-13 26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1037
Acc36I ACCTGC 1 cut(s) 1037
AccB7I CCANNNNNTGG 1 cut(s) 142
AccBSI CCGCTC 1 cut(s) 14
AccII CGCG 1 cut(s) 1000
AciI CCGC 5 cut(s) 14, 214, 219, 830, 863
AclWI GGATC 3 cut(s) 28, 126, 198
AcsI RAATTY 3 cut(s) 274, 571, 630
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 5 cut(s) 155, 554, 797, 860, 905
AfiI CCNNNNNNNGG 4 cut(s) 142, 535, 744, 799
AflII CTTAAG 2 cut(s) 236, 701
AgsI TTSAA 2 cut(s) 500, 944
AhdI GACNNNNNGTC 1 cut(s) 1065
AjiI CACGTC 1 cut(s) 412
AjnI CCWGG 3 cut(s) 597, 987, 1092
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
Alw26I GTCTC 3 cut(s) 638, 1052, 1149
AlwI GGATC 3 cut(s) 28, 126, 198
AlwNI CAGNNNCTG 1 cut(s) 1141
AoxI GGCC 2 cut(s) 216, 957
ApeKI GCWGC 4 cut(s) 28, 361, 584, 1010
ApoI RAATTY 3 cut(s) 274, 571, 630
Asp700I GAANNNNTTC 1 cut(s) 633
AspLEI GCGC 1 cut(s) 1002
AspS9I GGNCC 1 cut(s) 216
AsuHPI GGTGA 3 cut(s) 26, 293, 521
BauI CACGAG 1 cut(s) 1146
BbvI GCAGC 4 cut(s) 40, 373, 571, 997
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 3 cut(s) 599, 989, 1094
BcoDI GTCTC 3 cut(s) 638, 1052, 1149
BfaI CTAG 1 cut(s) 44
BfrI CTTAAG 2 cut(s) 236, 701
BfuAI ACCTGC 1 cut(s) 1037
BglII AGATCT 1 cut(s) 729
BisI GCNGC 5 cut(s) 29, 219, 362, 585, 1011
BlsI GCNGC 5 cut(s) 30, 220, 363, 586, 1012
Bme1390I CCNGG 3 cut(s) 599, 989, 1094
BmeRI GACNNNNNGTC 1 cut(s) 1065
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 3 cut(s) 599, 989, 1094
BmrI ACTGGG 1 cut(s) 523
BmsI GCATC 4 cut(s) 253, 684, 709, 1063
BmuI ACTGGG 1 cut(s) 523
Bpu10I CCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 89
Bsa29I ATCGAT 1 cut(s) 1155
BsaBI GATNNNNATC 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 638
BsaJI CCNNGG 1 cut(s) 136
BsaWI WCCGGW 1 cut(s) 870
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 535, 744, 799
Bse118I RCCGGY 1 cut(s) 528
Bse1I ACTGG 2 cut(s) 518, 793
Bse3DI GCAATG 2 cut(s) 954, 1005
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 3 cut(s) 599, 989, 1094
BseCI ATCGAT 1 cut(s) 1155
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 70
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 4 cut(s) 142, 535, 744, 799
BseMI GCAATG 2 cut(s) 954, 1005
BseMII CTCAG 6 cut(s) 38, 102, 717, 756, 825, 923
BseNI ACTGG 2 cut(s) 518, 793
BseRI GAGGAG 2 cut(s) 53, 245
BseXI GCAGC 4 cut(s) 40, 373, 571, 997
BseYI CCCAGC 1 cut(s) 1013
BsgI GTGCAG 1 cut(s) 854
Bsh1236I CGCG 1 cut(s) 1000
BshFI GGCC 2 cut(s) 218, 959
BshVI ATCGAT 1 cut(s) 1155
BsiSI CCGG 2 cut(s) 529, 871
BslI CCNNNNNNNGG 4 cut(s) 142, 535, 744, 799
BsmAI GTCTC 3 cut(s) 638, 1052, 1149
BsmI GAATGC 1 cut(s) 1087
BsnI GGCC 2 cut(s) 218, 959
Bso31I GGTCTC 1 cut(s) 638
Bsp143I GATC 7 cut(s) 20, 131, 190, 457, 729, 1152, 1156
Bsp19I CCATGG 1 cut(s) 136
BspACI CCGC 5 cut(s) 14, 214, 219, 830, 863
BspANI GGCC 2 cut(s) 218, 959
BspCNI CTCAG 6 cut(s) 37, 103, 718, 757, 824, 922
BspDI ATCGAT 1 cut(s) 1155
BspFNI CGCG 1 cut(s) 1000
BspLI GGNNCC 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 1037
BspPI GGATC 3 cut(s) 28, 126, 198
BspQI GCTCTTC 1 cut(s) 62
BspTI CTTAAG 2 cut(s) 236, 701
BspTNI GGTCTC 1 cut(s) 638
BsrBI CCGCTC 1 cut(s) 14
BsrDI GCAATG 2 cut(s) 954, 1005
BsrFI RCCGGY 1 cut(s) 528
BsrI ACTGG 2 cut(s) 518, 793
BssAI RCCGGY 1 cut(s) 528
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 7 cut(s) 20, 131, 190, 457, 729, 1152, 1156
BssSI CACGAG 1 cut(s) 1146
BssT1I CCWWGG 1 cut(s) 136
Bst2BI CACGAG 1 cut(s) 1146
Bst2UI CCWGG 3 cut(s) 599, 989, 1094
Bst4CI ACNGT 9 cut(s) 8, 388, 664, 739, 851, 898, 940, 1028, 1067
Bst6I CTCTTC 4 cut(s) 62, 178, 222, 495
BstAFI CTTAAG 2 cut(s) 236, 701
BstAPI GCANNNNNTGC 1 cut(s) 1082
BstC8I GCNNGC 2 cut(s) 216, 589
BstDEI CTNAG 7 cut(s) 24, 111, 312, 726, 765, 811, 909
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 1 cut(s) 70
BstFNI CGCG 1 cut(s) 1000
BstHHI GCGC 1 cut(s) 1002
BstKTI GATC 7 cut(s) 23, 134, 193, 460, 732, 1155, 1159
BstMAI GTCTC 3 cut(s) 638, 1052, 1149
BstMBI GATC 7 cut(s) 20, 131, 190, 457, 729, 1152, 1156
BstMWI GCNNNNNNNGC 4 cut(s) 241, 308, 827, 1082
BstNI CCWGG 3 cut(s) 599, 989, 1094
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 3 cut(s) 597, 987, 1092
BstUI CGCG 1 cut(s) 1000
BstV1I GCAGC 4 cut(s) 40, 373, 571, 997
BstX2I RGATCY 3 cut(s) 20, 131, 729
BstYI RGATCY 3 cut(s) 20, 131, 729
Bsu15I ATCGAT 1 cut(s) 1155
BsuRI GGCC 2 cut(s) 218, 959
BsuTUI ATCGAT 1 cut(s) 1155
BtgI CCRYGG 1 cut(s) 136
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 3 cut(s) 372, 903, 1024
BveI ACCTGC 1 cut(s) 1037
Cac8I GCNNGC 2 cut(s) 216, 589
CaiI CAGNNNCTG 1 cut(s) 1141
CfoI GCGC 1 cut(s) 1002
Cfr10I RCCGGY 1 cut(s) 528
Cfr13I GGNCC 1 cut(s) 216
ClaI ATCGAT 1 cut(s) 1155
Csp6I GTAC 5 cut(s) 154, 553, 796, 859, 904
CviAII CATG 3 cut(s) 137, 559, 880
CviQI GTAC 5 cut(s) 154, 553, 796, 859, 904
DdeI CTNAG 7 cut(s) 24, 111, 312, 726, 765, 811, 909
DpnI GATC 7 cut(s) 22, 133, 192, 459, 731, 1154, 1158
DpnII GATC 7 cut(s) 20, 131, 190, 457, 729, 1152, 1156
DriI GACNNNNNGTC 1 cut(s) 1065
Eam1104I CTCTTC 4 cut(s) 62, 178, 222, 495
Eam1105I GACNNNNNGTC 1 cut(s) 1065
EarI CTCTTC 4 cut(s) 62, 178, 222, 495
Eco130I CCWWGG 1 cut(s) 136
Eco147I AGGCCT 1 cut(s) 959
Eco31I GGTCTC 1 cut(s) 638
Eco57I CTGAAG 1 cut(s) 396
EcoRII CCWGG 3 cut(s) 597, 987, 1092
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 3 cut(s) 140, 562, 883
FalI AAGNNNNNCTT 4 cut(s) 219, 251, 291, 323
FatI CATG 3 cut(s) 136, 558, 879
FauI CCCGC 2 cut(s) 207, 870
FauNDI CATATG 2 cut(s) 625, 640
Fnu4HI GCNGC 5 cut(s) 29, 219, 362, 585, 1011
FokI GGATG 1 cut(s) 57
Fsp4HI GCNGC 5 cut(s) 29, 219, 362, 585, 1011
FspBI CTAG 1 cut(s) 44
GlaI GCGC 1 cut(s) 1001
GluI GCNGC 5 cut(s) 29, 219, 362, 585, 1011
GsaI CCCAGC 1 cut(s) 1017
HaeIII GGCC 2 cut(s) 218, 959
HapII CCGG 2 cut(s) 529, 871
HhaI GCGC 1 cut(s) 1002
Hin1II CATG 3 cut(s) 140, 562, 883
Hin6I GCGC 1 cut(s) 1000
HinP1I GCGC 1 cut(s) 1000
HindIII AAGCTT 3 cut(s) 196, 351, 1019
HinfI GANTC 5 cut(s) 206, 602, 751, 920, 1131
HpaII CCGG 2 cut(s) 529, 871
HphI GGTGA 3 cut(s) 26, 293, 521
Hpy166II GTNNAC 2 cut(s) 564, 904
Hpy188I TCNGA 5 cut(s) 112, 131, 766, 774, 893
Hpy188III TCNNGA 8 cut(s) 74, 83, 91, 296, 331, 667, 1070, 1135
Hpy8I GTNNAC 2 cut(s) 564, 904
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 6 cut(s) 11, 371, 539, 574, 625, 658
HpyCH4III ACNGT 9 cut(s) 8, 388, 664, 739, 851, 898, 940, 1028, 1067
HpyCH4IV ACGT 2 cut(s) 411, 425
HpyCH4V TGCA 8 cut(s) 260, 266, 558, 722, 835, 1046, 1076, 1085
HpyF10VI GCNNNNNNNGC 4 cut(s) 241, 308, 827, 1082
HpyF3I CTNAG 7 cut(s) 24, 111, 312, 726, 765, 811, 909
HpySE526I ACGT 2 cut(s) 411, 425
Hsp92II CATG 3 cut(s) 140, 562, 883
HspAI GCGC 1 cut(s) 1000
Kzo9I GATC 7 cut(s) 20, 131, 190, 457, 729, 1152, 1156
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 4 cut(s) 11, 151, 232, 358
Lsp1109I GCAGC 4 cut(s) 40, 373, 571, 997
LweI GCATC 4 cut(s) 253, 684, 709, 1063
MaeI CTAG 1 cut(s) 44
MaeII ACGT 2 cut(s) 411, 425
MaeIII GTNAC 4 cut(s) 426, 509, 851, 934
MalI GATC 7 cut(s) 22, 133, 192, 459, 731, 1154, 1158
MbiI CCGCTC 1 cut(s) 14
MboI GATC 7 cut(s) 20, 131, 190, 457, 729, 1152, 1156
MboII GAAGA 8 cut(s) 49, 165, 239, 265, 281, 512, 535, 760
MflI RGATCY 3 cut(s) 20, 131, 729
MluCI AATT 5 cut(s) 165, 274, 491, 571, 630
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 376
MnlI CCTC 9 cut(s) 42, 71, 74, 106, 181, 223, 496, 513, 876
MroXI GAANNNNTTC 1 cut(s) 633
MseI TTAA 4 cut(s) 237, 576, 702, 734
MslI CAYNNNNRTG 1 cut(s) 75
MspCI CTTAAG 2 cut(s) 236, 701
MspI CCGG 2 cut(s) 529, 871
MspR9I CCNGG 3 cut(s) 599, 989, 1094
Mva1269I GAATGC 1 cut(s) 1087
MvaI CCWGG 3 cut(s) 599, 989, 1094
MvnI CGCG 1 cut(s) 1000
MwoI GCNNNNNNNGC 4 cut(s) 241, 308, 827, 1082
NcoI CCATGG 1 cut(s) 136
NdeI CATATG 2 cut(s) 625, 640
NdeII GATC 7 cut(s) 20, 131, 190, 457, 729, 1152, 1156
NlaIII CATG 3 cut(s) 140, 562, 883
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 2 cut(s) 509, 934
NspI RCATGY 1 cut(s) 562
PaqCI CACCTGC 1 cut(s) 1037
PceI AGGCCT 1 cut(s) 959
PciSI GCTCTTC 1 cut(s) 62
PctI GAATGC 1 cut(s) 1087
PdmI GAANNNNTTC 1 cut(s) 633
PfeI GAWTC 4 cut(s) 602, 751, 920, 1131
PflMI CCANNNNNTGG 1 cut(s) 142
PfoI TCCNGGA 1 cut(s) 597
PkrI GCNGC 5 cut(s) 30, 220, 363, 586, 1012
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Psp6I CCWGG 3 cut(s) 597, 987, 1092
PspFI CCCAGC 1 cut(s) 1013
PspGI CCWGG 3 cut(s) 597, 987, 1092
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 216
PstNI CAGNNNCTG 1 cut(s) 1141
PsuI RGATCY 3 cut(s) 20, 131, 729
RsaI GTAC 5 cut(s) 155, 554, 797, 860, 905
RsaNI GTAC 5 cut(s) 154, 553, 796, 859, 904
RseI CAYNNNNRTG 1 cut(s) 75
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 4 cut(s) 237, 576, 702, 734
SatI GCNGC 5 cut(s) 29, 219, 362, 585, 1011
Sau3AI GATC 7 cut(s) 20, 131, 190, 457, 729, 1152, 1156
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 3 cut(s) 599, 989, 1094
SfaNI GCATC 4 cut(s) 253, 684, 709, 1063
SmiMI CAYNNNNRTG 1 cut(s) 75
SmlI CTYRAG 3 cut(s) 104, 236, 701
SmoI CTYRAG 3 cut(s) 104, 236, 701
Sse9I AATT 5 cut(s) 165, 274, 491, 571, 630
SseBI AGGCCT 1 cut(s) 959
SsiI CCGC 5 cut(s) 14, 214, 219, 830, 863
SspMI CTAG 1 cut(s) 44
StuI AGGCCT 1 cut(s) 959
StyD4I CCNGG 3 cut(s) 597, 987, 1092
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 9 cut(s) 8, 388, 664, 739, 851, 898, 940, 1028, 1067
TaiI ACGT 2 cut(s) 414, 428
TaqI TCGA 4 cut(s) 90, 246, 975, 1155
TasI AATT 5 cut(s) 165, 274, 491, 571, 630
TatI WGTACW 3 cut(s) 552, 795, 903
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 4 cut(s) 602, 751, 920, 1131
Tru1I TTAA 4 cut(s) 237, 576, 702, 734
Tru9I TTAA 4 cut(s) 237, 576, 702, 734
TscAI CASTG 3 cut(s) 379, 903, 1031
TseFI GTSAC 2 cut(s) 509, 934
TseI GCWGC 4 cut(s) 28, 361, 584, 1010
Tsp45I GTSAC 2 cut(s) 509, 934
TspDTI ATGAA 8 cut(s) 115, 240, 316, 558, 640, 642, 970, 994
TspRI CASTG 3 cut(s) 379, 903, 1031
Van91I CCANNNNNTGG 1 cut(s) 142
Vha464I CTTAAG 2 cut(s) 236, 701
XapI RAATTY 3 cut(s) 274, 571, 630
XceI RCATGY 1 cut(s) 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 595
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.