MD14G1163300.v1.1

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
25738517 .. 25741669
3153 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1163300.v1.1.491

Sequence Viewer

Length: 1161 bp
ATGGAGGCCCAAGAGGGGACGCAGCAGCCGCACCTTGTGCTCGCAAACAAGCTCTTCCTCCTTTCCCATTCCGATGTCCCGGACATCGAAAAGGTCCAACTCAGGGACGAGGTTTTCACCTCCGTCAAAGCCGACGATATGGCGCCGTTGTACGAAACCCTAGTCTCCGAATCGGTGCTTGAGCTGGACCAGGGCGTTATGGACTCGATGAGGGCGAAGAACCAGGAGGAGCTCAAGAAACTTGACGAAAAGATTGCTGACGCGGAAGAGAACTTAGGGGAAAGTGAGGTTCGAGAAGCTCACTTGGCCAAGTCCCTGTTTTTCATTCGTATTGGCGACAAGGAGAAAGCATTGGAACAACTCAAAGTAACGGAAAGCAAGACAGTTGCAGTTGGGCAAAAGATGGACTTGGTCTTCCATACACTGCAACTTGGTTTCTTTTACATGGATTTTGACCTCATTTCTAAGAGTATTGACAAAGCGAAGAACTTATTTGAAGAGGGAGGTGATTGGGAAAGGAAGAATCGTTTGAAGGTTTATGAAGGCTTGTACTGCATGTCCACTCGGAATTTTAAGAAGGCTGCTGATTTGTTCTTGGATTCGATTTCTACCTTCACCACTTATGAAATATTTCCATATGACATCTTCATATTTTATACCGTCCTTACAAGCATTATATCGTTGGACAGAGTTTCTTTAAAACAAAAGGTCGTGGATGCTCCAGAGATATTGACAGTGATTGGGAAGATTCCGTACCTTACCGAGTTTTTGAACTCTCTTTATGATTGCCAATACAAATCATTTTTCAAAGCATTTGCTGGCCTGACAGAGCAGATAAAGTTGGACCGTTATTTGCATCCACACTTCCGGTATTACATGAGGGAGATCCGAACTGTTGTTTATTCCCAGTTCTTGGAATCCTACAAGAGTGTCACTATTGAAGCAATGGCTAAAGCATTTGGCGTCACTGTGGATTTCATTGATAGGGAGTTGTCTCGTTTCATTGCGGCAGGGAAGCTTCATTGCAAGATTGACAAAGTTGCTGGTGTACTAGAAACTAACCGTCCAGATGCTAAGAATTCACTGTACCAAGCAACCATCAAACAAGGGGACTTCTTATTGAACCGCATCCAGAAGCTATCTCGTGTCATTGACCTGTAG

Protein Analysis

387

Amino Acids

44.47

Weight (kDa)

5.57

Isoelectric Point (pI)

28.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPN7 PF10602 63 - 236 2.8e-66 26S proteasome subunit RPN7
PCI PF01399 277 - 354 2.1e-18 PCI domain
RPN7_PSMD6_C PF21154 363 - 384 7.6e-13 26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AccB7I CCANNNNNTGG 1 cut(s) 913
AccII CGCG 1 cut(s) 263
AciI CCGC 4 cut(s) 29, 263, 1007, 1126
AclWI GGATC 1 cut(s) 880
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 2 cut(s) 568, 1078
AcyI GRCGYC 2 cut(s) 143, 963
AdeI CACNNNGTG 1 cut(s) 37
AfaI GTAC 5 cut(s) 152, 551, 755, 1050, 1088
AfiI CCNNNNNNNGG 3 cut(s) 15, 103, 913
AgsI TTSAA 6 cut(s) 497, 532, 772, 808, 941, 1123
AjnI CCWGG 2 cut(s) 189, 222
AluBI AGCT 6 cut(s) 52, 184, 232, 299, 1018, 1138
AluI AGCT 6 cut(s) 52, 184, 232, 299, 1018, 1138
Alw21I GWGCWC 2 cut(s) 42, 234
Alw26I GTCTC 2 cut(s) 169, 999
AlwI GGATC 1 cut(s) 880
AoxI GGCC 3 cut(s) 6, 306, 820
ApeKI GCWGC 3 cut(s) 22, 25, 581
ApoI RAATTY 2 cut(s) 568, 1078
ArsI GACNNNNNNTTYG 2 cut(s) 147, 179
Asp700I GAANNNNTTC 1 cut(s) 630
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 4 cut(s) 7, 94, 187, 844
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 3 cut(s) 109, 518, 607
AvaII GGWCC 3 cut(s) 94, 187, 844
BalI TGGCCA 1 cut(s) 308
BanI GGYRCC 1 cut(s) 142
BanII GRGCYC 1 cut(s) 234
BarI GAAGNNNNNNTAC 2 cut(s) 737, 769
BauI CACGAG 1 cut(s) 1143
BbsI GAAGAC 1 cut(s) 406
Bbv12I GWGCWC 2 cut(s) 42, 234
BbvI GCAGC 3 cut(s) 34, 37, 568
BccI CCATC 2 cut(s) 397, 1106
BceAI ACGGC 1 cut(s) 130
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 2 cut(s) 191, 224
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 2 cut(s) 169, 999
BfaI CTAG 2 cut(s) 161, 1052
BfmI CTRYAG 1 cut(s) 1157
BfoI RGCGCY 1 cut(s) 146
BisI GCNGC 5 cut(s) 23, 26, 29, 582, 1008
BlsI GCNGC 5 cut(s) 24, 27, 30, 583, 1009
Bme1390I CCNGG 3 cut(s) 80, 191, 224
Bme18I GGWCC 3 cut(s) 94, 187, 844
BmgT120I GGNCC 4 cut(s) 7, 94, 187, 844
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 3 cut(s) 80, 191, 224
BmrI ACTGGG 1 cut(s) 901
BmsI GCATC 4 cut(s) 706, 865, 1060, 1137
BmuI ACTGGG 1 cut(s) 901
BpiI GAAGAC 1 cut(s) 406
BpmI CTGGAG 1 cut(s) 705
BpuEI CTTGAG 2 cut(s) 200, 218
BpuMI CCSGG 1 cut(s) 80
BsaHI GRCGYC 2 cut(s) 143, 963
BsaJI CCNNGG 1 cut(s) 190
BsaWI WCCGGW 1 cut(s) 867
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 103, 913
Bse1I ACTGG 1 cut(s) 907
Bse3DI GCAATG 3 cut(s) 951, 1002, 1021
BseBI CCWGG 2 cut(s) 191, 224
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 3 cut(s) 721, 856, 1128
BseLI CCNNNNNNNGG 3 cut(s) 15, 103, 913
BseMI GCAATG 3 cut(s) 951, 1002, 1021
BseMII CTCAG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 907
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 3 cut(s) 34, 37, 568
Bsh1236I CGCG 1 cut(s) 263
BshFI GGCC 3 cut(s) 8, 308, 822
BshNI GGYRCC 1 cut(s) 142
BsiHKAI GWGCWC 2 cut(s) 42, 234
BsiSI CCGG 2 cut(s) 80, 868
BslFI GGGAC 5 cut(s) 31, 62, 119, 298, 1124
BslI CCNNNNNNNGG 3 cut(s) 15, 103, 913
BsmAI GTCTC 2 cut(s) 169, 999
BsmFI GGGAC 5 cut(s) 31, 62, 119, 298, 1124
BsnI GGCC 3 cut(s) 8, 308, 822
Bsp1286I GDGCHC 2 cut(s) 42, 234
Bsp143I GATC 1 cut(s) 885
BspACI CCGC 4 cut(s) 29, 263, 1007, 1126
BspANI GGCC 3 cut(s) 8, 308, 822
BspCNI CTCAG 1 cut(s) 114
BspFNI CGCG 1 cut(s) 263
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 1 cut(s) 880
BspQI GCTCTTC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 142
BsrDI GCAATG 3 cut(s) 951, 1002, 1021
BsrI ACTGG 1 cut(s) 907
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 885
BssNI GRCGYC 2 cut(s) 143, 963
BssSI CACGAG 1 cut(s) 1143
Bst2BI CACGAG 1 cut(s) 1143
Bst2UI CCWGG 2 cut(s) 191, 224
Bst4CI ACNGT 8 cut(s) 385, 661, 736, 848, 895, 970, 1064, 1086
Bst6I CTCTTC 3 cut(s) 59, 261, 492
BstACI GRCGYC 2 cut(s) 143, 963
BstAPI GCANNNNNTGC 1 cut(s) 37
BstC8I GCNNGC 2 cut(s) 42, 820
BstDEI CTNAG 4 cut(s) 101, 274, 465, 1074
BstF5I GGATG 3 cut(s) 721, 856, 1128
BstFNI CGCG 1 cut(s) 263
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 1 cut(s) 888
BstMAI GTCTC 2 cut(s) 169, 999
BstMBI GATC 1 cut(s) 885
BstMWI GCNNNNNNNGC 4 cut(s) 28, 37, 305, 552
BstNI CCWGG 2 cut(s) 191, 224
BstNSI RCATGY 1 cut(s) 559
BstSCI CCNGG 3 cut(s) 78, 189, 222
BstSFI CTRYAG 1 cut(s) 1157
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 3 cut(s) 34, 37, 568
BstV2I GAAGAC 1 cut(s) 406
BstX2I RGATCY 1 cut(s) 885
BstYI RGATCY 1 cut(s) 885
BsuRI GGCC 3 cut(s) 8, 308, 822
BtsCI GGATG 3 cut(s) 721, 856, 1128
BtsI GCAGTG 1 cut(s) 422
BtsIMutI CAGTG 4 cut(s) 422, 741, 966, 1082
Cac8I GCNNGC 2 cut(s) 42, 820
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 4 cut(s) 7, 94, 187, 844
CseI GACGC 3 cut(s) 28, 269, 952
Csp6I GTAC 5 cut(s) 151, 550, 754, 1049, 1087
CviAII CATG 3 cut(s) 445, 556, 877
CviQI GTAC 5 cut(s) 151, 550, 754, 1049, 1087
DdeI CTNAG 4 cut(s) 101, 274, 465, 1074
DinI GGCGCC 1 cut(s) 144
DpnI GATC 1 cut(s) 887
DpnII GATC 1 cut(s) 885
DraI TTTAAA 1 cut(s) 699
DraIII CACNNNGTG 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 3 cut(s) 59, 261, 492
EarI CTCTTC 3 cut(s) 59, 261, 492
Ecl136II GAGCTC 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 234
Eco47I GGWCC 3 cut(s) 94, 187, 844
Eco53kI GAGCTC 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 1078
EcoRII CCWGG 2 cut(s) 189, 222
EcoT38I GRGCYC 1 cut(s) 234
EgeI GGCGCC 1 cut(s) 144
EheI GGCGCC 1 cut(s) 144
FaeI CATG 3 cut(s) 448, 559, 880
FalI AAGNNNNNCTT 2 cut(s) 392, 424
FaqI GGGAC 5 cut(s) 31, 62, 119, 298, 1124
FatI CATG 3 cut(s) 444, 555, 876
FauNDI CATATG 1 cut(s) 637
Fnu4HI GCNGC 5 cut(s) 23, 26, 29, 582, 1008
FokI GGATG 3 cut(s) 728, 843, 1115
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 5 cut(s) 23, 26, 29, 582, 1008
FspBI CTAG 2 cut(s) 161, 1052
GlaI GCGC 1 cut(s) 144
GluI GCNGC 5 cut(s) 23, 26, 29, 582, 1008
GsuI CTGGAG 1 cut(s) 705
HaeII RGCGCY 1 cut(s) 146
HaeIII GGCC 3 cut(s) 8, 308, 822
HapII CCGG 2 cut(s) 80, 868
HgaI GACGC 3 cut(s) 28, 269, 952
HhaI GCGC 1 cut(s) 145
Hin1I GRCGYC 2 cut(s) 143, 963
Hin1II CATG 3 cut(s) 448, 559, 880
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HindIII AAGCTT 1 cut(s) 1016
HinfI GANTC 6 cut(s) 170, 203, 523, 599, 748, 917
HpaII CCGG 2 cut(s) 80, 868
HphI GGTGA 3 cut(s) 109, 518, 607
Hpy166II GTNNAC 2 cut(s) 561, 1049
Hpy188I TCNGA 4 cut(s) 73, 169, 567, 890
Hpy188III TCNNGA 5 cut(s) 235, 293, 722, 1067, 1132
Hpy8I GTNNAC 2 cut(s) 561, 1049
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 4 cut(s) 526, 536, 571, 622
HpyCH4III ACNGT 8 cut(s) 385, 661, 736, 848, 895, 970, 1064, 1086
HpyCH4V TGCA 5 cut(s) 389, 427, 555, 856, 1026
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 37, 305, 552
HpyF3I CTNAG 4 cut(s) 101, 274, 465, 1074
Hsp92I GRCGYC 2 cut(s) 143, 963
Hsp92II CATG 3 cut(s) 448, 559, 880
HspAI GCGC 1 cut(s) 143
KasI GGCGCC 1 cut(s) 142
Kzo9I GATC 1 cut(s) 885
LguI GCTCTTC 1 cut(s) 59
LmnI GCTCC 2 cut(s) 229, 724
Lsp1109I GCAGC 3 cut(s) 34, 37, 568
LweI GCATC 4 cut(s) 706, 865, 1060, 1137
MaeI CTAG 2 cut(s) 161, 1052
MaeIII GTNAC 3 cut(s) 367, 931, 964
MalI GATC 1 cut(s) 887
MboI GATC 1 cut(s) 885
MboII GAAGA 9 cut(s) 46, 229, 278, 406, 496, 509, 532, 637, 757
MflI RGATCY 1 cut(s) 885
MhlI GDGCHC 2 cut(s) 42, 234
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 2 cut(s) 568, 1078
MluNI TGGCCA 1 cut(s) 308
Mly113I GGCGCC 1 cut(s) 143
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 3 cut(s) 121, 663, 822
Mox20I TGGCCA 1 cut(s) 308
MroXI GAANNNNTTC 1 cut(s) 630
MscI TGGCCA 1 cut(s) 308
MseI TTAA 2 cut(s) 573, 698
MslI CAYNNNNRTG 1 cut(s) 72
Msp20I TGGCCA 1 cut(s) 308
MspI CCGG 2 cut(s) 80, 868
MspR9I CCNGG 3 cut(s) 80, 191, 224
MvaI CCWGG 2 cut(s) 191, 224
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 4 cut(s) 28, 37, 305, 552
NarI GGCGCC 1 cut(s) 143
NciI CCSGG 1 cut(s) 80
NdeI CATATG 1 cut(s) 637
NdeII GATC 1 cut(s) 885
NlaIII CATG 3 cut(s) 448, 559, 880
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 2 cut(s) 931, 964
NspI RCATGY 1 cut(s) 559
PciSI GCTCTTC 1 cut(s) 59
PcsI WCGNNNNNNNCGW 1 cut(s) 212
PdmI GAANNNNTTC 1 cut(s) 630
PfeI GAWTC 5 cut(s) 170, 523, 599, 748, 917
PflFI GACNNNGTC 1 cut(s) 410
PflMI CCANNNNNTGG 1 cut(s) 913
PfoI TCCNGGA 1 cut(s) 78
PkrI GCNGC 5 cut(s) 24, 27, 30, 583, 1009
PleI GAGTC 1 cut(s) 197
PluTI GGCGCC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 234
Psp6I CCWGG 2 cut(s) 189, 222
PspGI CCWGG 2 cut(s) 189, 222
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 4 cut(s) 7, 94, 187, 844
PsuI RGATCY 1 cut(s) 885
PsyI GACNNNGTC 1 cut(s) 410
RsaI GTAC 5 cut(s) 152, 551, 755, 1050, 1088
RsaNI GTAC 5 cut(s) 151, 550, 754, 1049, 1087
RseI CAYNNNNRTG 1 cut(s) 72
SacI GAGCTC 1 cut(s) 234
SapI GCTCTTC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 573, 698
SatI GCNGC 5 cut(s) 23, 26, 29, 582, 1008
Sau3AI GATC 1 cut(s) 885
Sau96I GGNCC 4 cut(s) 7, 94, 187, 844
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 3 cut(s) 80, 191, 224
SduI GDGCHC 2 cut(s) 42, 234
SfaNI GCATC 4 cut(s) 706, 865, 1060, 1137
SfcI CTRYAG 1 cut(s) 1157
SfoI GGCGCC 1 cut(s) 144
SinI GGWCC 3 cut(s) 94, 187, 844
SmiMI CAYNNNNRTG 1 cut(s) 72
SmlI CTYRAG 2 cut(s) 179, 233
SmoI CTYRAG 2 cut(s) 179, 233
Sse9I AATT 2 cut(s) 568, 1078
SsiI CCGC 4 cut(s) 29, 263, 1007, 1126
SspDI GGCGCC 1 cut(s) 142
SspI AATATT 1 cut(s) 630
SspMI CTAG 2 cut(s) 161, 1052
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 3 cut(s) 78, 189, 222
TaaI ACNGT 8 cut(s) 385, 661, 736, 848, 895, 970, 1064, 1086
TaqI TCGA 4 cut(s) 87, 206, 292, 602
TasI AATT 2 cut(s) 568, 1078
TatI WGTACW 2 cut(s) 549, 1048
TauI GCSGC 2 cut(s) 31, 1010
TfiI GAWTC 5 cut(s) 170, 523, 599, 748, 917
Tru1I TTAA 2 cut(s) 573, 698
Tru9I TTAA 2 cut(s) 573, 698
TscAI CASTG 4 cut(s) 429, 741, 973, 1089
TseFI GTSAC 2 cut(s) 931, 964
TseI GCWGC 3 cut(s) 22, 25, 581
Tsp45I GTSAC 2 cut(s) 931, 964
TspDTI ATGAA 7 cut(s) 313, 555, 637, 639, 967, 991, 1010
TspGWI ACGGA 3 cut(s) 112, 386, 741
TspRI CASTG 4 cut(s) 429, 741, 973, 1089
Tth111I GACNNNGTC 1 cut(s) 410
Van91I CCANNNNNTGG 1 cut(s) 913
VpaK11BI GGWCC 3 cut(s) 94, 187, 844
XapI RAATTY 2 cut(s) 568, 1078
XceI RCATGY 1 cut(s) 559
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 2 cut(s) 161, 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.