Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005007

Physical Location & Seq

Genomic Coordinates Reverse (-)

39389519 .. 39390230

Gene Structure 712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32238

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTTCCTATTAATTAATTTATTAGATACTAATCGTGATTGGAAAAATCCCATAAAGCTAGATCTTTATTTGCATCCACACTTCCAGTATTACATGAGGGAGATCAGAATCGTTGTTTATTCTCAATTTTTGGAATCCAACAAGAGTGTCACTACTGAAGCAATGGTGAAGGCATTTGGCGCGACAGTGAATTTCATTGATCTGGAGCTGTCTCGGTTCATTGCAGCAGGGAAACTCCACTGCAAGATAGATAAAGTTTCAAGTGTTCTAGAAATGAATTGTTTGGATGCCACGACTTCTCTGTATCAGGCAACTATCAAGCAAGGGGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03050 ko04066 ko05010 ko05169 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03050 map04066 map05010 map05169

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

111

Amino Acids

12.85

Weight (kDa)

6.82

Isoelectric Point (pI)

13.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	12 - 93	8.5e-14	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24820 AT4G24820
fragaria_vesca	FvH4_3g25540
malus_domestica	MD06G1151500.v1.1 MD06G1156100.v1.1 MD14G1163300.v1.1
prunus_persica	Prupe.5G156700_v2.0.a1
pyrus_communis	pycom06g13920 pycom14g13590
rosa_chinensis	RchiOBHm_Chr5g0017921 RchiOBHm_Chr5g0044171 RchiOBHm_Chr5g0065961 RchiOBHm_Chr7g0191031 RchiOBHm_Chr7g0191061
rosa_laevigata	RLG00000004478
rosa_multiflora	Rmu_sc0000184.1_g000009 Rmu_sc0002080.1_g000014 Rmu_sc0005637.1_g000001 Rmu_sc0015000.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036890 Rroxscaffold_3G00264070
rosa_rugosa	Rorug06G0508300
rosa_samantha	Rh7AG115600 Rh7BG117900 Rh7BG118300 Rh7CG120800 Rh7CG186900 Rh7DG119300
rosa_wichuraiana	Rw2G007700 Rw7G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	177
AgsI	TTSAA	1 cut(s)	261
AluBI	AGCT	2 cut(s)	58, 208
AluI	AGCT	2 cut(s)	58, 208
Alw26I	GTCTC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	190
AseI	ATTAAT	2 cut(s)	11, 15
AspLEI	GCGC	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	2 cut(s)	59, 269
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
BmsI	GCATC	2 cut(s)	82, 277
BpmI	CTGGAG	1 cut(s)	224
BsaBI	GATNNNNATC	2 cut(s)	30, 107
Bse1I	ACTGG	1 cut(s)	85
Bse3DI	GCAATG	2 cut(s)	168, 219
Bse8I	GATNNNNATC	2 cut(s)	30, 107
BseGI	GGATG	2 cut(s)	73, 292
BseJI	GATNNNNATC	2 cut(s)	30, 107
BseMI	GCAATG	2 cut(s)	168, 219
BseNI	ACTGG	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	216
Bsp143I	GATC	3 cut(s)	61, 102, 199
BspFNI	CGCG	1 cut(s)	182
BsrDI	GCAATG	2 cut(s)	168, 219
BsrI	ACTGG	1 cut(s)	85
BssMI	GATC	3 cut(s)	61, 102, 199
Bst4CI	ACNGT	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	73, 292
BstFNI	CGCG	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	3 cut(s)	64, 105, 202
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	3 cut(s)	61, 102, 199
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	73, 292
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	2 cut(s)	192, 238
CfoI	GCGC	1 cut(s)	182
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	2 cut(s)	58, 208
CviKI_1	RGCY	2 cut(s)	58, 208
DpnI	GATC	3 cut(s)	63, 104, 201
DpnII	GATC	3 cut(s)	61, 102, 199
Eco57I	CTGAAG	1 cut(s)	177
FaeI	CATG	1 cut(s)	97
FaiI	YATR	2 cut(s)	53, 95
FatI	CATG	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	2 cut(s)	60, 299
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	2 cut(s)	59, 269
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	224
HhaI	GCGC	1 cut(s)	182
Hin1II	CATG	1 cut(s)	97
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HinfI	GANTC	2 cut(s)	108, 134
HphI	GGTGA	1 cut(s)	178
Hpy188I	TCNGA	2 cut(s)	107, 335
Hpy188III	TCNNGA	3 cut(s)	35, 203, 269
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	3 cut(s)	73, 224, 243
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
Hsp92II	CATG	1 cut(s)	97
HspAI	GCGC	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	61, 102, 199
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	4 cut(s)	98, 188, 213, 293
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	2 cut(s)	82, 277
MaeI	CTAG	2 cut(s)	59, 269
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	3 cut(s)	63, 104, 201
MboI	GATC	3 cut(s)	61, 102, 199
MflI	RGATCY	1 cut(s)	61
MluCI	AATT	5 cut(s)	12, 16, 125, 190, 277
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	1 cut(s)	90
MseI	TTAA	2 cut(s)	11, 15
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	3 cut(s)	61, 102, 199
NlaIII	CATG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	148
PacI	TTAATTAA	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	108, 134
PkrI	GCNGC	1 cut(s)	226
PshBI	ATTAAT	2 cut(s)	11, 15
PsuI	RGATCY	1 cut(s)	61
SaqAI	TTAA	2 cut(s)	11, 15
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	3 cut(s)	61, 102, 199
SetI	ASST	2 cut(s)	60, 210
SfaNI	GCATC	2 cut(s)	82, 277
Sse9I	AATT	5 cut(s)	12, 16, 125, 190, 277
SspMI	CTAG	2 cut(s)	59, 269
TaaI	ACNGT	1 cut(s)	187
TasI	AATT	5 cut(s)	12, 16, 125, 190, 277
TfiI	GAWTC	2 cut(s)	108, 134
Tru1I	TTAA	2 cut(s)	11, 15
Tru9I	TTAA	2 cut(s)	11, 15
TscAI	CASTG	2 cut(s)	192, 245
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	3 cut(s)	184, 208, 290
TspRI	CASTG	2 cut(s)	192, 245
VspI	ATTAAT	2 cut(s)	11, 15
XapI	RAATTY	1 cut(s)	190
XbaI	TCTAGA	1 cut(s)	268
XspI	CTAG	2 cut(s)	59, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.