Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0005007

Physical Location & Seq

Genomic Coordinates Reverse (-)

29522457 .. 29525489

Gene Structure 3033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1151500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGAAGCCCAAGAGGGGACGCAGCAGCCGCATCTCGTGCTCGCAAACAAGCTCTTCCTCCTCTCCCATTCCGATGTTCCGGACATCGAAAAGGTCCAACTCAGGGAGGAGGTTTTCGCCTCCGTCAAAGCCGACCATATGGCGCCGTTGTACGAAACCCTGGTCGCCGAATCGGTGCTTGAGCTGGACCAGGGCGTTATGGACTCGATGAGGGCGAAGAACCGGGAGGAGCTCAAGAAGATCGACGAAAAGATTGCTGATGCGGAAGAAAACTTAGGGGAAAGTGAGGTTCGAGAAGCTCATTTGGCCAAGTCCCTGTTTTTCATTCGTATTGGTGACAAGGAGAAAGCTTTGGAACAACTCAAGGTAACGGAAAGCAAGACAGTTGCAGTTGGGCAAAAGATGGACTTGGTCTTCTATACACTGCAACTTGGTTTCTTTTACATGGATTTTGACCTCATTTCTAAGAGTATTGACAAAGCAAAGAATTTATTTGAAGAGGGAGGTGATTGGGAAAGGAAGAACCGTTTGAAGGTGTATGAAGGTTTGTACTGCATGTCCACTCGGAATTTTAAGAAGGCTGCTGATCTGTTCTTGGATTCCATTTCTACCTTCACCACTTATGAGATATTTCCGTATGACATCTTCATATTTTATACCGTCCTTACAAGCATTATATCGTTGGACAGAGTTTCTTTAAAACAAAAGGTCGTGGATGCTCCAGAAATATTGACAGTGATTGGGAAAATTCCCTACCTTACAGAGTTTTTGAACTCTCTATATGATTGCCAATACAAATCATTTTTCAAAGCTTTTGCTGGCCTGACAGAGCAGATAAAGTTGGACCGTTATTTGCACCCACACTTTCGGTATTACATGAGGGAGATCAGAACTGTTGTTTATTCTCAGTTCTTGGAGTCCTACAAGAGTGTTACTATTGAAGCTATGGCTAAAGCATTTGGCGTGACCGTGGATTTCATTGATCTGGAACTATCTCGTTTCATTGCGGCAGGGAAGCTTCATTGCAAGATTGACAAAGTTGCCGGAGTTCTAGAAACCAATCGTCCTGATGCTAAGAATTCACTGTACCAAGCAACCATCAAGCAAGGGGACTTCTTATTGAACCGCATCCAGAAGCTATCTCGTGTCATTGACCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03050 ko04066 ko05010 ko05169 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03050 map04066 map05010 map05169

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

387

Amino Acids

44.47

Weight (kDa)

5.68

Isoelectric Point (pI)

29.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN7	PF10602	63 - 236	4e-65	26S proteasome subunit RPN7
PCI	PF01399	277 - 354	6e-18	PCI domain
RPN7_PSMD6_C	PF21154	363 - 384	7.6e-13	26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24820 AT4G24820
fragaria_vesca	FvH4_3g25540
malus_domestica	MD06G1151500.v1.1 MD06G1156100.v1.1 MD14G1163300.v1.1
prunus_persica	Prupe.5G156700_v2.0.a1
pyrus_communis	pycom06g13920 pycom14g13590
rosa_chinensis	RchiOBHm_Chr5g0017921 RchiOBHm_Chr5g0044171 RchiOBHm_Chr5g0065961 RchiOBHm_Chr7g0191031 RchiOBHm_Chr7g0191061
rosa_laevigata	RLG00000004478
rosa_multiflora	Rmu_sc0000184.1_g000009 Rmu_sc0002080.1_g000014 Rmu_sc0005637.1_g000001 Rmu_sc0015000.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036890 Rroxscaffold_3G00264070
rosa_rugosa	Rorug06G0508300
rosa_samantha	Rh7AG115600 Rh7BG117900 Rh7BG118300 Rh7CG120800 Rh7CG186900 Rh7DG119300
rosa_wichuraiana	Rw2G007700 Rw7G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AccIII	TCCGGA	1 cut(s)	79
AciI	CCGC	4 cut(s)	29, 263, 1007, 1126
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	4 cut(s)	487, 568, 747, 1078
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	3 cut(s)	152, 551, 1088
AfiI	CCNNNNNNNGG	3 cut(s)	15, 103, 532
AgsI	TTSAA	6 cut(s)	497, 532, 772, 808, 941, 1123
AjnI	CCWGG	2 cut(s)	159, 189
AluBI	AGCT	9 cut(s)	52, 184, 232, 299, 350, 812, 944, 1018, 1138
AluI	AGCT	9 cut(s)	52, 184, 232, 299, 350, 812, 944, 1018, 1138
Alw21I	GWGCWC	2 cut(s)	42, 234
Aor13HI	TCCGGA	1 cut(s)	79
AoxI	GGCC	2 cut(s)	306, 820
ApeKI	GCWGC	3 cut(s)	22, 25, 581
ApoI	RAATTY	4 cut(s)	487, 568, 747, 1078
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	3 cut(s)	94, 187, 844
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	3 cut(s)	347, 518, 607
AvaII	GGWCC	3 cut(s)	94, 187, 844
BalI	TGGCCA	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	234
BarI	GAAGNNNNNNTAC	2 cut(s)	629, 661
BauI	CACGAG	2 cut(s)	35, 1143
BbsI	GAAGAC	1 cut(s)	406
Bbv12I	GWGCWC	2 cut(s)	42, 234
BbvI	GCAGC	3 cut(s)	34, 37, 568
BccI	CCATC	2 cut(s)	397, 1106
BceAI	ACGGC	1 cut(s)	130
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	2 cut(s)	161, 191
BcnI	CCSGG	1 cut(s)	224
BfaI	CTAG	1 cut(s)	1052
BfmI	CTRYAG	1 cut(s)	1157
BfoI	RGCGCY	1 cut(s)	146
BisI	GCNGC	5 cut(s)	23, 26, 29, 582, 1008
BlsI	GCNGC	5 cut(s)	24, 27, 30, 583, 1009
Bme1390I	CCNGG	3 cut(s)	161, 191, 224
Bme18I	GGWCC	3 cut(s)	94, 187, 844
BmgT120I	GGNCC	3 cut(s)	94, 187, 844
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	3 cut(s)	161, 191, 224
BmsI	GCATC	5 cut(s)	40, 250, 706, 1060, 1137
BpiI	GAAGAC	1 cut(s)	406
BpmI	CTGGAG	1 cut(s)	705
BpuEI	CTTGAG	3 cut(s)	200, 218, 347
BpuMI	CCSGG	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	143
BsaJI	CCNNGG	3 cut(s)	159, 190, 969
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 103, 532
Bse3DI	GCAATG	2 cut(s)	1002, 1021
BseAI	TCCGGA	1 cut(s)	79
BseBI	CCWGG	2 cut(s)	161, 191
BseDI	CCNNGG	3 cut(s)	159, 190, 969
BseGI	GGATG	2 cut(s)	721, 1128
BseLI	CCNNNNNNNGG	3 cut(s)	15, 103, 532
BseMI	GCAATG	2 cut(s)	1002, 1021
BseMII	CTCAG	2 cut(s)	115, 920
BseRI	GAGGAG	3 cut(s)	50, 122, 242
BseXI	GCAGC	3 cut(s)	34, 37, 568
BshFI	GGCC	2 cut(s)	308, 822
BshNI	GGYRCC	1 cut(s)	142
BsiHKAI	GWGCWC	2 cut(s)	42, 234
BsiSI	CCGG	3 cut(s)	80, 223, 1044
BslFI	GGGAC	3 cut(s)	31, 298, 1124
BslI	CCNNNNNNNGG	3 cut(s)	15, 103, 532
BsmFI	GGGAC	3 cut(s)	31, 298, 1124
BsnI	GGCC	2 cut(s)	308, 822
Bsp1286I	GDGCHC	2 cut(s)	42, 234
Bsp13I	TCCGGA	1 cut(s)	79
Bsp143I	GATC	4 cut(s)	240, 586, 885, 982
BspACI	CCGC	4 cut(s)	29, 263, 1007, 1126
BspANI	GGCC	2 cut(s)	308, 822
BspCNI	CTCAG	2 cut(s)	114, 919
BspEI	TCCGGA	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	144
BspQI	GCTCTTC	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	142
BsrDI	GCAATG	2 cut(s)	1002, 1021
BssECI	CCNNGG	3 cut(s)	159, 190, 969
BssMI	GATC	4 cut(s)	240, 586, 885, 982
BssNI	GRCGYC	1 cut(s)	143
BssSI	CACGAG	2 cut(s)	35, 1143
Bst2BI	CACGAG	2 cut(s)	35, 1143
Bst2UI	CCWGG	2 cut(s)	161, 191
Bst4CI	ACNGT	8 cut(s)	385, 527, 661, 736, 848, 895, 970, 1086
Bst6I	CTCTTC	2 cut(s)	59, 492
BstACI	GRCGYC	1 cut(s)	143
BstAPI	GCANNNNNTGC	1 cut(s)	37
BstC8I	GCNNGC	2 cut(s)	42, 820
BstDEI	CTNAG	5 cut(s)	101, 274, 465, 906, 1074
BstDSI	CCRYGG	1 cut(s)	969
BstF5I	GGATG	2 cut(s)	721, 1128
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	4 cut(s)	243, 589, 888, 985
BstMBI	GATC	4 cut(s)	240, 586, 885, 982
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 37, 305
BstNI	CCWGG	2 cut(s)	161, 191
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	3 cut(s)	159, 189, 222
BstSFI	CTRYAG	1 cut(s)	1157
BstV1I	GCAGC	3 cut(s)	34, 37, 568
BstV2I	GAAGAC	1 cut(s)	406
BsuRI	GGCC	2 cut(s)	308, 822
BtgI	CCRYGG	1 cut(s)	969
BtsCI	GGATG	2 cut(s)	721, 1128
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	3 cut(s)	422, 741, 1082
Cac8I	GCNNGC	2 cut(s)	42, 820
CfoI	GCGC	1 cut(s)	145
Cfr13I	GGNCC	3 cut(s)	94, 187, 844
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	3 cut(s)	151, 550, 1087
CviAII	CATG	3 cut(s)	445, 556, 877
CviQI	GTAC	3 cut(s)	151, 550, 1087
DdeI	CTNAG	5 cut(s)	101, 274, 465, 906, 1074
DinI	GGCGCC	1 cut(s)	144
DpnI	GATC	4 cut(s)	242, 588, 887, 984
DpnII	GATC	4 cut(s)	240, 586, 885, 982
DraI	TTTAAA	1 cut(s)	699
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	2 cut(s)	59, 492
EarI	CTCTTC	2 cut(s)	59, 492
Ecl136II	GAGCTC	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	3 cut(s)	94, 187, 844
Eco53kI	GAGCTC	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	1078
EcoRII	CCWGG	2 cut(s)	159, 189
EcoT38I	GRGCYC	1 cut(s)	234
EgeI	GGCGCC	1 cut(s)	144
EheI	GGCGCC	1 cut(s)	144
FaeI	CATG	3 cut(s)	448, 559, 880
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	3 cut(s)	31, 298, 1124
FatI	CATG	3 cut(s)	444, 555, 876
FauNDI	CATATG	1 cut(s)	138
Fnu4HI	GCNGC	5 cut(s)	23, 26, 29, 582, 1008
FokI	GGATG	2 cut(s)	728, 1115
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	5 cut(s)	23, 26, 29, 582, 1008
FspBI	CTAG	1 cut(s)	1052
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	5 cut(s)	23, 26, 29, 582, 1008
GsuI	CTGGAG	1 cut(s)	705
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	2 cut(s)	308, 822
HapII	CCGG	3 cut(s)	80, 223, 1044
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	3 cut(s)	448, 559, 880
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HindIII	AAGCTT	3 cut(s)	348, 810, 1016
HinfI	GANTC	4 cut(s)	170, 203, 599, 917
HpaII	CCGG	3 cut(s)	80, 223, 1044
HphI	GGTGA	3 cut(s)	347, 518, 607
Hpy166II	GTNNAC	1 cut(s)	561
Hpy188I	TCNGA	3 cut(s)	73, 567, 890
Hpy188III	TCNNGA	8 cut(s)	80, 235, 293, 722, 986, 1052, 1067, 1132
Hpy8I	GTNNAC	1 cut(s)	561
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	4 cut(s)	526, 536, 571, 622
HpyCH4III	ACNGT	8 cut(s)	385, 527, 661, 736, 848, 895, 970, 1086
HpyCH4V	TGCA	5 cut(s)	389, 427, 555, 856, 1026
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 37, 305
HpyF3I	CTNAG	5 cut(s)	101, 274, 465, 906, 1074
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	3 cut(s)	448, 559, 880
HspAI	GCGC	1 cut(s)	143
KasI	GGCGCC	1 cut(s)	142
Kpn2I	TCCGGA	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	240, 586, 885, 982
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	2 cut(s)	229, 724
Lsp1109I	GCAGC	3 cut(s)	34, 37, 568
LweI	GCATC	5 cut(s)	40, 250, 706, 1060, 1137
MaeI	CTAG	1 cut(s)	1052
MaeIII	GTNAC	4 cut(s)	335, 367, 931, 964
MalI	GATC	4 cut(s)	242, 588, 887, 984
MboI	GATC	4 cut(s)	240, 586, 885, 982
MboII	GAAGA	8 cut(s)	46, 229, 250, 278, 406, 509, 532, 637
MhlI	GDGCHC	2 cut(s)	42, 234
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	4 cut(s)	487, 568, 747, 1078
MluNI	TGGCCA	1 cut(s)	308
Mly113I	GGCGCC	1 cut(s)	143
MlyI	GAGTC	2 cut(s)	197, 926
MmeI	TCCRAC	3 cut(s)	121, 663, 822
Mox20I	TGGCCA	1 cut(s)	308
MroI	TCCGGA	1 cut(s)	79
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	2 cut(s)	573, 698
MslI	CAYNNNNRTG	1 cut(s)	72
Msp20I	TGGCCA	1 cut(s)	308
MspI	CCGG	3 cut(s)	80, 223, 1044
MspR9I	CCNGG	3 cut(s)	161, 191, 224
MvaI	CCWGG	2 cut(s)	161, 191
MwoI	GCNNNNNNNGC	3 cut(s)	28, 37, 305
NarI	GGCGCC	1 cut(s)	143
NciI	CCSGG	1 cut(s)	224
NdeI	CATATG	1 cut(s)	138
NdeII	GATC	4 cut(s)	240, 586, 885, 982
NlaIII	CATG	3 cut(s)	448, 559, 880
NlaIV	GGNNCC	1 cut(s)	144
NmuCI	GTSAC	2 cut(s)	335, 964
NspI	RCATGY	1 cut(s)	559
PciSI	GCTCTTC	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PfeI	GAWTC	2 cut(s)	170, 599
PflFI	GACNNNGTC	1 cut(s)	410
PkrI	GCNGC	5 cut(s)	24, 27, 30, 583, 1009
PleI	GAGTC	2 cut(s)	197, 925
PluTI	GGCGCC	1 cut(s)	146
PpsI	GAGTC	2 cut(s)	197, 925
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	159, 189
PspGI	CCWGG	2 cut(s)	159, 189
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	3 cut(s)	94, 187, 844
PsyI	GACNNNGTC	1 cut(s)	410
RsaI	GTAC	3 cut(s)	152, 551, 1088
RsaNI	GTAC	3 cut(s)	151, 550, 1087
RseI	CAYNNNNRTG	1 cut(s)	72
SacI	GAGCTC	1 cut(s)	234
SapI	GCTCTTC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	573, 698
SatI	GCNGC	5 cut(s)	23, 26, 29, 582, 1008
Sau3AI	GATC	4 cut(s)	240, 586, 885, 982
Sau96I	GGNCC	3 cut(s)	94, 187, 844
SchI	GAGTC	2 cut(s)	197, 926
ScrFI	CCNGG	3 cut(s)	161, 191, 224
SduI	GDGCHC	2 cut(s)	42, 234
SfaNI	GCATC	5 cut(s)	40, 250, 706, 1060, 1137
SfcI	CTRYAG	1 cut(s)	1157
SfoI	GGCGCC	1 cut(s)	144
SinI	GGWCC	3 cut(s)	94, 187, 844
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	3 cut(s)	179, 233, 362
SmoI	CTYRAG	3 cut(s)	179, 233, 362
Sse9I	AATT	4 cut(s)	487, 568, 747, 1078
SsiI	CCGC	4 cut(s)	29, 263, 1007, 1126
SspDI	GGCGCC	1 cut(s)	142
SspI	AATATT	1 cut(s)	729
SspMI	CTAG	1 cut(s)	1052
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	3 cut(s)	159, 189, 222
TaaI	ACNGT	8 cut(s)	385, 527, 661, 736, 848, 895, 970, 1086
TaqI	TCGA	4 cut(s)	87, 206, 243, 292
TasI	AATT	4 cut(s)	487, 568, 747, 1078
TatI	WGTACW	1 cut(s)	549
TauI	GCSGC	2 cut(s)	31, 1010
TfiI	GAWTC	2 cut(s)	170, 599
Tru1I	TTAA	2 cut(s)	573, 698
Tru9I	TTAA	2 cut(s)	573, 698
TscAI	CASTG	3 cut(s)	429, 741, 1089
TseFI	GTSAC	2 cut(s)	335, 964
TseI	GCWGC	3 cut(s)	22, 25, 581
Tsp45I	GTSAC	2 cut(s)	335, 964
TspDTI	ATGAA	6 cut(s)	313, 555, 637, 967, 991, 1010
TspGWI	ACGGA	3 cut(s)	112, 386, 624
TspRI	CASTG	3 cut(s)	429, 741, 1089
Tth111I	GACNNNGTC	1 cut(s)	410
VpaK11BI	GGWCC	3 cut(s)	94, 187, 844
XapI	RAATTY	4 cut(s)	487, 568, 747, 1078
XbaI	TCTAGA	1 cut(s)	1051
XceI	RCATGY	1 cut(s)	559
XspI	CTAG	1 cut(s)	1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.