Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005637.1

Orthogroup ID

OG0005007

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2567

Gene Structure 2567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005637.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 808 bp

gattgccgatgctgaagaaaacctgggagaaagtgaagtcagagaagctcatttggccaagtccctgttcttcatccgtataggtgacaaggaaaaagcgctggaacaactcaaggtaacagaaagcaagacagttgcagtagggcaaaagatggacttggtgttctatacgcttcagcttggtttcttttacatggattttgacctcatttctaagagcattgagaaagcgaaaaatttatttgaagagggaggtgattgggaaaggaagaatcgtttgaaggtatatgaaggcttgtactgcatgtccactcgaaattttaagaaggcagccgatttgttcctggattctatttctaccttcaccacttacgaaatatttccctatgacatcttcatattttataccgtcctcacaagcattatatctttggacagagtttctttaaaacagaaggtatactccggtctgactgagcagataaagctggatcgttatttgcatccacacttccggtattacatgagggaaatcagaaccgttgtttattctcaatttttggagtcctacaagagtgtcactattgaagcaatggcaaaggcatttggcgtgacagtggatttcattgatctggagctgtctcggttcattgcagcagggaaactccactgcaagatagataaagtttcaggtgttctagaaactaatcgtccggatgccaagaattctctgtatcaggcaactatcaagcaaggggacttcctactgaacaggatccagaagttgtcgcgtgtgattgatctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03050 ko04066 ko05010 ko05169 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03050 map04066 map05010 map05169

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

268

Amino Acids

31.08

Weight (kDa)

7.83

Isoelectric Point (pI)

29.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24820 AT4G24820
fragaria_vesca	FvH4_3g25540
malus_domestica	MD06G1151500.v1.1 MD06G1156100.v1.1 MD14G1163300.v1.1
prunus_persica	Prupe.5G156700_v2.0.a1
pyrus_communis	pycom06g13920 pycom14g13590
rosa_chinensis	RchiOBHm_Chr5g0017921 RchiOBHm_Chr5g0044171 RchiOBHm_Chr5g0065961 RchiOBHm_Chr7g0191031 RchiOBHm_Chr7g0191061
rosa_laevigata	RLG00000004478
rosa_multiflora	Rmu_sc0000184.1_g000009 Rmu_sc0002080.1_g000014 Rmu_sc0005637.1_g000001 Rmu_sc0015000.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036890 Rroxscaffold_3G00264070
rosa_rugosa	Rorug06G0508300
rosa_samantha	Rh7AG115600 Rh7BG117900 Rh7BG118300 Rh7CG120800 Rh7CG186900 Rh7DG119300
rosa_wichuraiana	Rw2G007700 Rw7G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	460
AccII	CGCG	1 cut(s)	791
AccIII	TCCGGA	1 cut(s)	713
AclWI	GGATC	3 cut(s)	499, 770, 783
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	3 cut(s)	236, 317, 725
AcuI	CTGAAG	2 cut(s)	34, 159
AfaI	GTAC	1 cut(s)	300
AfeI	AGCGCT	1 cut(s)	100
AgsI	TTSAA	3 cut(s)	246, 281, 588
AjnI	CCWGG	2 cut(s)	22, 343
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AloI	GAACNNNNNNTCC	2 cut(s)	147, 179
AluBI	AGCT	4 cut(s)	48, 179, 488, 638
AluI	AGCT	4 cut(s)	48, 179, 488, 638
Alw26I	GTCTC	1 cut(s)	646
AlwI	GGATC	3 cut(s)	499, 770, 783
Aor13HI	TCCGGA	1 cut(s)	713
Aor51HI	AGCGCT	1 cut(s)	100
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	330, 654
ApoI	RAATTY	3 cut(s)	236, 317, 725
Asp700I	GAANNNNTTC	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	101
AsuHPI	GGTGA	3 cut(s)	96, 267, 356
BalI	TGGCCA	1 cut(s)	57
BamHI	GGATCC	1 cut(s)	775
BbvI	GCAGC	2 cut(s)	342, 666
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	2 cut(s)	24, 345
BcoDI	GTCTC	1 cut(s)	646
BfaI	CTAG	1 cut(s)	699
BfmI	CTRYAG	1 cut(s)	804
BfoI	RGCGCY	1 cut(s)	102
BisI	GCNGC	2 cut(s)	331, 655
BlsI	GCNGC	2 cut(s)	332, 656
Bme1390I	CCNGG	2 cut(s)	24, 345
BmiI	GGNNCC	1 cut(s)	777
BmrFI	CCNGG	2 cut(s)	24, 345
BmsI	GCATC	2 cut(s)	512, 707
BpmI	CTGGAG	1 cut(s)	654
BpuEI	CTTGAG	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	23
BsaWI	WCCGGW	3 cut(s)	465, 514, 713
Bse3DI	GCAATG	2 cut(s)	598, 649
BseAI	TCCGGA	1 cut(s)	713
BseBI	CCWGG	2 cut(s)	24, 345
BseDI	CCNNGG	1 cut(s)	23
BseGI	GGATG	3 cut(s)	73, 503, 722
BseMI	GCAATG	2 cut(s)	598, 649
BseMII	CTCAG	1 cut(s)	466
BseXI	GCAGC	2 cut(s)	342, 666
Bsh1236I	CGCG	1 cut(s)	791
BshFI	GGCC	1 cut(s)	57
BsiSI	CCGG	3 cut(s)	466, 515, 714
BslFI	GGGAC	2 cut(s)	47, 771
BsmAI	GTCTC	1 cut(s)	646
BsmFI	GGGAC	2 cut(s)	47, 771
BsnI	GGCC	1 cut(s)	57
Bsp13I	TCCGGA	1 cut(s)	713
Bsp143I	GATC	4 cut(s)	491, 629, 775, 800
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	467
BspEI	TCCGGA	1 cut(s)	713
BspFNI	CGCG	1 cut(s)	791
BspLI	GGNNCC	1 cut(s)	777
BspPI	GGATC	3 cut(s)	499, 770, 783
BsrDI	GCAATG	2 cut(s)	598, 649
BssECI	CCNNGG	1 cut(s)	23
BssMI	GATC	4 cut(s)	491, 629, 775, 800
BssNAI	GTATAC	1 cut(s)	461
Bst1107I	GTATAC	1 cut(s)	461
Bst2UI	CCWGG	2 cut(s)	24, 345
Bst4CI	ACNGT	4 cut(s)	134, 410, 542, 617
Bst6I	CTCTTC	1 cut(s)	241
BstDEI	CTNAG	2 cut(s)	214, 475
BstF5I	GGATG	3 cut(s)	73, 503, 722
BstFNI	CGCG	1 cut(s)	791
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	4 cut(s)	494, 632, 778, 803
BstMAI	GTCTC	1 cut(s)	646
BstMBI	GATC	4 cut(s)	491, 629, 775, 800
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 301, 485
BstNI	CCWGG	2 cut(s)	24, 345
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	22, 343
BstSFI	CTRYAG	1 cut(s)	804
BstUI	CGCG	1 cut(s)	791
BstV1I	GCAGC	2 cut(s)	342, 666
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
BstZ17I	GTATAC	1 cut(s)	461
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	3 cut(s)	73, 503, 722
BtsI	GCAGTG	1 cut(s)	668
BtsIMutI	CAGTG	2 cut(s)	622, 668
CfoI	GCGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	299
CviAII	CATG	3 cut(s)	194, 305, 524
CviJI	RGCY	7 cut(s)	48, 57, 179, 295, 333, 488, 638
CviKI_1	RGCY	7 cut(s)	48, 57, 179, 295, 333, 488, 638
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	2 cut(s)	214, 475
DpnI	GATC	4 cut(s)	493, 631, 777, 802
DpnII	GATC	4 cut(s)	491, 629, 775, 800
DraI	TTTAAA	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
Eco47III	AGCGCT	1 cut(s)	100
Eco57I	CTGAAG	2 cut(s)	34, 159
EcoRI	GAATTC	1 cut(s)	725
EcoRII	CCWGG	2 cut(s)	22, 343
FaeI	CATG	3 cut(s)	197, 308, 527
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FaqI	GGGAC	2 cut(s)	47, 771
FatI	CATG	3 cut(s)	193, 304, 523
FblI	GTMKAC	1 cut(s)	460
Fnu4HI	GCNGC	2 cut(s)	331, 655
FokI	GGATG	3 cut(s)	60, 490, 729
Fsp4HI	GCNGC	2 cut(s)	331, 655
FspBI	CTAG	1 cut(s)	699
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	2 cut(s)	331, 655
GsuI	CTGGAG	1 cut(s)	654
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	3 cut(s)	466, 515, 714
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	3 cut(s)	197, 308, 527
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HinfI	GANTC	3 cut(s)	272, 348, 564
HpaII	CCGG	3 cut(s)	466, 515, 714
HphI	GGTGA	3 cut(s)	96, 267, 356
Hpy166II	GTNNAC	2 cut(s)	310, 461
Hpy188I	TCNGA	3 cut(s)	42, 472, 537
Hpy188III	TCNNGA	4 cut(s)	633, 699, 714, 779
Hpy8I	GTNNAC	2 cut(s)	310, 461
HpyAV	CCTTC	5 cut(s)	275, 285, 320, 371, 449
HpyCH4III	ACNGT	4 cut(s)	134, 410, 542, 617
HpyCH4V	TGCA	5 cut(s)	138, 304, 503, 654, 673
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 301, 485
HpyF3I	CTNAG	2 cut(s)	214, 475
Hsp92II	CATG	3 cut(s)	197, 308, 527
HspAI	GCGC	1 cut(s)	99
Kpn2I	TCCGGA	1 cut(s)	713
Kzo9I	GATC	4 cut(s)	491, 629, 775, 800
LmnI	GCTCC	1 cut(s)	635
Lsp1109I	GCAGC	2 cut(s)	342, 666
LweI	GCATC	2 cut(s)	512, 707
MaeI	CTAG	1 cut(s)	699
MaeIII	GTNAC	4 cut(s)	84, 116, 578, 611
MalI	GATC	4 cut(s)	493, 631, 777, 802
MboI	GATC	4 cut(s)	491, 629, 775, 800
MboII	GAAGA	5 cut(s)	27, 62, 258, 281, 386
MflI	RGATCY	1 cut(s)	775
MlsI	TGGCCA	1 cut(s)	57
MluCI	AATT	4 cut(s)	236, 317, 555, 725
MluNI	TGGCCA	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	573
MnlI	CCTC	5 cut(s)	216, 242, 246, 423, 520
Mox20I	TGGCCA	1 cut(s)	57
MroI	TCCGGA	1 cut(s)	713
MroXI	GAANNNNTTC	1 cut(s)	379
MscI	TGGCCA	1 cut(s)	57
MseI	TTAA	2 cut(s)	322, 447
Msp20I	TGGCCA	1 cut(s)	57
MspI	CCGG	3 cut(s)	466, 515, 714
MspR9I	CCNGG	2 cut(s)	24, 345
MvaI	CCWGG	2 cut(s)	24, 345
MvnI	CGCG	1 cut(s)	791
MwoI	GCNNNNNNNGC	3 cut(s)	54, 301, 485
NdeII	GATC	4 cut(s)	491, 629, 775, 800
NlaIII	CATG	3 cut(s)	197, 308, 527
NlaIV	GGNNCC	1 cut(s)	777
NmuCI	GTSAC	3 cut(s)	84, 578, 611
NspI	RCATGY	1 cut(s)	308
PdmI	GAANNNNTTC	1 cut(s)	379
PfeI	GAWTC	2 cut(s)	272, 348
PfoI	TCCNGGA	1 cut(s)	343
PkrI	GCNGC	2 cut(s)	332, 656
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
Psp6I	CCWGG	2 cut(s)	22, 343
PspGI	CCWGG	2 cut(s)	22, 343
PspN4I	GGNNCC	1 cut(s)	777
PsuI	RGATCY	1 cut(s)	775
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	322, 447
SatI	GCNGC	2 cut(s)	331, 655
Sau3AI	GATC	4 cut(s)	491, 629, 775, 800
SchI	GAGTC	1 cut(s)	573
ScrFI	CCNGG	2 cut(s)	24, 345
SfaNI	GCATC	2 cut(s)	512, 707
SfcI	CTRYAG	1 cut(s)	804
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
Sse9I	AATT	4 cut(s)	236, 317, 555, 725
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	1 cut(s)	699
StyD4I	CCNGG	2 cut(s)	22, 343
TaaI	ACNGT	4 cut(s)	134, 410, 542, 617
TaqI	TCGA	1 cut(s)	314
TasI	AATT	4 cut(s)	236, 317, 555, 725
TatI	WGTACW	1 cut(s)	298
TfiI	GAWTC	2 cut(s)	272, 348
Tru1I	TTAA	2 cut(s)	322, 447
Tru9I	TTAA	2 cut(s)	322, 447
TscAI	CASTG	2 cut(s)	622, 675
TseFI	GTSAC	3 cut(s)	84, 578, 611
TseI	GCWGC	2 cut(s)	330, 654
Tsp45I	GTSAC	3 cut(s)	84, 578, 611
TspDTI	ATGAA	5 cut(s)	62, 304, 386, 614, 638
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	2 cut(s)	622, 675
XapI	RAATTY	3 cut(s)	236, 317, 725
XbaI	TCTAGA	1 cut(s)	698
XceI	RCATGY	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	460
XmnI	GAANNNNTTC	1 cut(s)	379
XspI	CTAG	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.