Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0005007

Physical Location & Seq

Genomic Coordinates Reverse (-)

29860044 .. 29861727

Gene Structure 1684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1156100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGAAGCCCAAGAGGGGACGCAGCAGCCGCACCTCGTGCTCGCAAACAAGCTCTTCCTCCTCTCCCATTCCGATGTCCCGGACATCGAAAAGGTCCAACTAAGGGAGGAGGTTTTTGCCTCCGTCAAAGCCGACGATATGGCGCCGTTGTACGAAACCCTAGTCGCCGAATCAATGCTCGAGCTGGACCAGGGCGTTATGGACTCGATGAGGGCGAAGAACCAGGAGGAGCTCAAGAAGCTCGATGAAAAATTCTGTTTGGTTACTGAGAATTCTGGCCTGACAGAGCAGATAAAGTTGGACCGTTATTTGCACCCACACTTCCGTTATTACATGAGGGAGATCAGAACTGTTGTTTATTCTCAGTTCTTGGAGTCCTACAAGAGTGTTACCATTGAAGCTATGGCTAAAGCTTTTGGCATGACCGTGGATTTCATTGATCTGGAGCTATCTCGTTTCATTGCAGCAGGGAAGCTTCATTGCAAGATTGACAAAGTTGCCGGTGTTTTAGAAACCAATCATCCTGATGCTAAGAATTCACTGTACCAAGCAACCATCAAGCAAGGGGACTTCTTATTGAACCGCATCCAGAAGCTATCTCGTGTCATTGACCTAACCGAAGTACTTGTATCGAGGTTTCCCTTTTCCTTTCTAATTGCTGTTCATTCATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03050 ko04066 ko05010 ko05169 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03050 map04066 map05010 map05169

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

225

Amino Acids

25.73

Weight (kDa)

5.54

Isoelectric Point (pI)

27.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	96 - 173	1.7e-18	PCI domain
RPN7_PSMD6_C	PF21154	182 - 203	3.8e-13	26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24820 AT4G24820
fragaria_vesca	FvH4_3g25540
malus_domestica	MD06G1151500.v1.1 MD06G1156100.v1.1 MD14G1163300.v1.1
prunus_persica	Prupe.5G156700_v2.0.a1
pyrus_communis	pycom06g13920 pycom14g13590
rosa_chinensis	RchiOBHm_Chr5g0017921 RchiOBHm_Chr5g0044171 RchiOBHm_Chr5g0065961 RchiOBHm_Chr7g0191031 RchiOBHm_Chr7g0191061
rosa_laevigata	RLG00000004478
rosa_multiflora	Rmu_sc0000184.1_g000009 Rmu_sc0002080.1_g000014 Rmu_sc0005637.1_g000001 Rmu_sc0015000.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036890 Rroxscaffold_3G00264070
rosa_rugosa	Rorug06G0508300
rosa_samantha	Rh7AG115600 Rh7BG117900 Rh7BG118300 Rh7CG120800 Rh7CG186900 Rh7DG119300
rosa_wichuraiana	Rw2G007700 Rw7G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AciI	CCGC	2 cut(s)	29, 583
AcsI	RAATTY	3 cut(s)	251, 271, 535
AcyI	GRCGYC	1 cut(s)	143
AdeI	CACNNNGTG	1 cut(s)	37
AfaI	GTAC	3 cut(s)	152, 545, 624
AfiI	CCNNNNNNNGG	2 cut(s)	15, 103
AgsI	TTSAA	2 cut(s)	398, 580
AjnI	CCWGG	2 cut(s)	189, 222
AluBI	AGCT	9 cut(s)	52, 184, 232, 241, 401, 413, 448, 475, 595
AluI	AGCT	9 cut(s)	52, 184, 232, 241, 401, 413, 448, 475, 595
Alw21I	GWGCWC	2 cut(s)	42, 234
Ama87I	CYCGRG	1 cut(s)	179
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	3 cut(s)	22, 25, 464
ApoI	RAATTY	3 cut(s)	251, 271, 535
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	3 cut(s)	94, 187, 301
AsuC2I	CCSGG	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	179
AvaII	GGWCC	3 cut(s)	94, 187, 301
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	234
BauI	CACGAG	2 cut(s)	35, 600
Bbv12I	GWGCWC	2 cut(s)	42, 234
BbvI	GCAGC	3 cut(s)	34, 37, 476
BccI	CCATC	1 cut(s)	563
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	2 cut(s)	191, 224
BcnI	CCSGG	1 cut(s)	80
BfaI	CTAG	1 cut(s)	161
BfoI	RGCGCY	1 cut(s)	146
BisI	GCNGC	4 cut(s)	23, 26, 29, 465
BlsI	GCNGC	4 cut(s)	24, 27, 30, 466
BmcAI	AGTACT	1 cut(s)	624
Bme1390I	CCNGG	3 cut(s)	80, 191, 224
Bme18I	GGWCC	3 cut(s)	94, 187, 301
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	3 cut(s)	94, 187, 301
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	3 cut(s)	80, 191, 224
BmsI	GCATC	2 cut(s)	517, 594
BpmI	CTGGAG	1 cut(s)	464
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	80
BsaHI	GRCGYC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	190, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 103
Bse118I	RCCGGY	1 cut(s)	500
Bse3DI	GCAATG	2 cut(s)	459, 478
BseBI	CCWGG	2 cut(s)	191, 224
BseDI	CCNNGG	2 cut(s)	190, 426
BseGI	GGATG	2 cut(s)	520, 585
BseLI	CCNNNNNNNGG	2 cut(s)	15, 103
BseMI	GCAATG	2 cut(s)	459, 478
BseMII	CTCAG	2 cut(s)	258, 377
BseRI	GAGGAG	3 cut(s)	50, 122, 242
BseXI	GCAGC	3 cut(s)	34, 37, 476
BshFI	GGCC	1 cut(s)	279
BshNI	GGYRCC	1 cut(s)	142
BsiHKAI	GWGCWC	2 cut(s)	42, 234
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	80, 501
BslFI	GGGAC	3 cut(s)	31, 62, 581
BslI	CCNNNNNNNGG	2 cut(s)	15, 103
BsmFI	GGGAC	3 cut(s)	31, 62, 581
BsnI	GGCC	1 cut(s)	279
BsoBI	CYCGRG	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	42, 234
Bsp143I	GATC	2 cut(s)	342, 439
BspACI	CCGC	2 cut(s)	29, 583
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	2 cut(s)	259, 376
BspLI	GGNNCC	1 cut(s)	144
BspQI	GCTCTTC	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	142
BsrDI	GCAATG	2 cut(s)	459, 478
BsrFI	RCCGGY	1 cut(s)	500
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	2 cut(s)	190, 426
BssMI	GATC	2 cut(s)	342, 439
BssNI	GRCGYC	1 cut(s)	143
BssSI	CACGAG	2 cut(s)	35, 600
Bst2BI	CACGAG	2 cut(s)	35, 600
Bst2UI	CCWGG	2 cut(s)	191, 224
Bst4CI	ACNGT	4 cut(s)	305, 352, 427, 543
Bst6I	CTCTTC	1 cut(s)	59
BstACI	GRCGYC	1 cut(s)	143
BstAPI	GCANNNNNTGC	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	4 cut(s)	101, 267, 363, 531
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	2 cut(s)	520, 585
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	2 cut(s)	345, 442
BstMBI	GATC	2 cut(s)	342, 439
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 37, 238
BstNI	CCWGG	2 cut(s)	191, 224
BstSCI	CCNGG	3 cut(s)	78, 189, 222
BstV1I	GCAGC	3 cut(s)	34, 37, 476
BsuRI	GGCC	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	426
BtsCI	GGATG	2 cut(s)	520, 585
BtsIMutI	CAGTG	1 cut(s)	539
Cac8I	GCNNGC	1 cut(s)	42
CfoI	GCGC	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	3 cut(s)	94, 187, 301
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	3 cut(s)	151, 544, 623
CviAII	CATG	3 cut(s)	334, 421, 669
CviQI	GTAC	3 cut(s)	151, 544, 623
DdeI	CTNAG	4 cut(s)	101, 267, 363, 531
DinI	GGCGCC	1 cut(s)	144
DpnI	GATC	2 cut(s)	344, 441
DpnII	GATC	2 cut(s)	342, 439
DraIII	CACNNNGTG	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Ecl136II	GAGCTC	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	3 cut(s)	94, 187, 301
Eco53kI	GAGCTC	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	232
EcoRI	GAATTC	2 cut(s)	271, 535
EcoRII	CCWGG	2 cut(s)	189, 222
EcoT38I	GRGCYC	1 cut(s)	234
EgeI	GGCGCC	1 cut(s)	144
EheI	GGCGCC	1 cut(s)	144
FaeI	CATG	3 cut(s)	337, 424, 672
FaiI	YATR	6 cut(s)	140, 200, 335, 404, 422, 670
FaqI	GGGAC	3 cut(s)	31, 62, 581
FatI	CATG	3 cut(s)	333, 420, 668
Fnu4HI	GCNGC	4 cut(s)	23, 26, 29, 465
FokI	GGATG	2 cut(s)	507, 572
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	4 cut(s)	23, 26, 29, 465
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	4 cut(s)	23, 26, 29, 465
GsuI	CTGGAG	1 cut(s)	464
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	2 cut(s)	80, 501
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	3 cut(s)	337, 424, 672
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HindIII	AAGCTT	2 cut(s)	411, 473
HinfI	GANTC	3 cut(s)	170, 203, 374
HpaII	CCGG	2 cut(s)	80, 501
Hpy188I	TCNGA	2 cut(s)	73, 347
Hpy188III	TCNNGA	4 cut(s)	235, 443, 524, 589
Hpy99I	CGWCG	1 cut(s)	137
HpyCH4III	ACNGT	4 cut(s)	305, 352, 427, 543
HpyCH4V	TGCA	3 cut(s)	313, 464, 483
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 37, 238
HpyF3I	CTNAG	4 cut(s)	101, 267, 363, 531
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	3 cut(s)	337, 424, 672
HspAI	GCGC	1 cut(s)	143
KasI	GGCGCC	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	342, 439
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	2 cut(s)	229, 445
Lsp1109I	GCAGC	3 cut(s)	34, 37, 476
LweI	GCATC	2 cut(s)	517, 594
MaeI	CTAG	1 cut(s)	161
MaeIII	GTNAC	2 cut(s)	262, 388
MalI	GATC	2 cut(s)	344, 441
MboI	GATC	2 cut(s)	342, 439
MboII	GAAGA	2 cut(s)	46, 229
MhlI	GDGCHC	2 cut(s)	42, 234
MluCI	AATT	4 cut(s)	251, 271, 535, 654
Mly113I	GGCGCC	1 cut(s)	143
MlyI	GAGTC	2 cut(s)	197, 383
MmeI	TCCRAC	2 cut(s)	121, 279
MslI	CAYNNNNRTG	3 cut(s)	72, 425, 525
MspI	CCGG	2 cut(s)	80, 501
MspR9I	CCNGG	3 cut(s)	80, 191, 224
MvaI	CCWGG	2 cut(s)	191, 224
MwoI	GCNNNNNNNGC	3 cut(s)	28, 37, 238
NarI	GGCGCC	1 cut(s)	143
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	2 cut(s)	342, 439
NlaIII	CATG	3 cut(s)	337, 424, 672
NlaIV	GGNNCC	1 cut(s)	144
PaeR7I	CTCGAG	1 cut(s)	179
PciSI	GCTCTTC	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	170
PfoI	TCCNGGA	1 cut(s)	78
PkrI	GCNGC	4 cut(s)	24, 27, 30, 466
PleI	GAGTC	2 cut(s)	197, 382
PluTI	GGCGCC	1 cut(s)	146
PpsI	GAGTC	2 cut(s)	197, 382
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	189, 222
PspGI	CCWGG	2 cut(s)	189, 222
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	3 cut(s)	94, 187, 301
PspXI	VCTCGAGB	1 cut(s)	179
RsaI	GTAC	3 cut(s)	152, 545, 624
RsaNI	GTAC	3 cut(s)	151, 544, 623
RseI	CAYNNNNRTG	3 cut(s)	72, 425, 525
SacI	GAGCTC	1 cut(s)	234
SapI	GCTCTTC	1 cut(s)	59
SatI	GCNGC	4 cut(s)	23, 26, 29, 465
Sau3AI	GATC	2 cut(s)	342, 439
Sau96I	GGNCC	3 cut(s)	94, 187, 301
ScaI	AGTACT	1 cut(s)	624
SchI	GAGTC	2 cut(s)	197, 383
ScrFI	CCNGG	3 cut(s)	80, 191, 224
SduI	GDGCHC	2 cut(s)	42, 234
SfaNI	GCATC	2 cut(s)	517, 594
SfoI	GGCGCC	1 cut(s)	144
Sfr274I	CTCGAG	1 cut(s)	179
SinI	GGWCC	3 cut(s)	94, 187, 301
SlaI	CTCGAG	1 cut(s)	179
SmiMI	CAYNNNNRTG	3 cut(s)	72, 425, 525
SmlI	CTYRAG	2 cut(s)	179, 233
SmoI	CTYRAG	2 cut(s)	179, 233
Sse9I	AATT	4 cut(s)	251, 271, 535, 654
SsiI	CCGC	2 cut(s)	29, 583
SspDI	GGCGCC	1 cut(s)	142
SspMI	CTAG	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	3 cut(s)	78, 189, 222
TaaI	ACNGT	4 cut(s)	305, 352, 427, 543
TaqI	TCGA	5 cut(s)	87, 180, 206, 243, 632
TasI	AATT	4 cut(s)	251, 271, 535, 654
TatI	WGTACW	1 cut(s)	622
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	170
TscAI	CASTG	1 cut(s)	546
TseI	GCWGC	3 cut(s)	22, 25, 464
TspDTI	ATGAA	6 cut(s)	261, 424, 448, 467, 653, 657
TspGWI	ACGGA	2 cut(s)	112, 314
TspRI	CASTG	1 cut(s)	546
VpaK11BI	GGWCC	3 cut(s)	94, 187, 301
XapI	RAATTY	3 cut(s)	251, 271, 535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XhoI	CTCGAG	1 cut(s)	179
XspI	CTAG	1 cut(s)	161
ZrmI	AGTACT	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.