Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005007

Physical Location & Seq

Genomic Coordinates Reverse (-)

16388474 .. 16399416

Gene Structure 10943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG186900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAGGGTTTGGGTATTGCGGATGAGGTTAAAAAGCACAAGGCCAACGACAAGTTCTGTTTATTTGAAGAGGGAGGTGATTGGGAAAGGAAGAATCGATTGAAGGTATATGAAGGCTTGTACTGCATGTCCACTCGAAATTTTAAGAAGGCAGCCGATTTGTTCCTGGATTCCATTTCTACCTTCACCACTTACACAATATTTCCCTATGACATCTTCATATTTTATACCGTCCTGACAAGCATTATATCTTTGGACAGAGTTTCTTTAAAACAGAAGTGGACTGTGTTCTGGTTTCGTAGACTGGACACGACAACACGCAGTGTGAGGCTAAGTTTTGGAAGTTGCTGGATTGATGGAGGAAGTACTTGGGTTTATTTTGAATTGATAGGACTGTGGTGGGAACGGACCCGCCAGCTGGCAGGTGTTACTAAACTAAGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03050 ko04066 ko05010 ko05169 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03050 map04066 map05010 map05169

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

148

Amino Acids

17.45

Weight (kDa)

9.15

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN7	PF10602	21 - 93	2.1e-28	26S proteasome subunit RPN7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24820 AT4G24820
fragaria_vesca	FvH4_3g25540
malus_domestica	MD06G1151500.v1.1 MD06G1156100.v1.1 MD14G1163300.v1.1
prunus_persica	Prupe.5G156700_v2.0.a1
pyrus_communis	pycom06g13920 pycom14g13590
rosa_chinensis	RchiOBHm_Chr5g0017921 RchiOBHm_Chr5g0044171 RchiOBHm_Chr5g0065961 RchiOBHm_Chr7g0191031 RchiOBHm_Chr7g0191061
rosa_laevigata	RLG00000004478
rosa_multiflora	Rmu_sc0000184.1_g000009 Rmu_sc0002080.1_g000014 Rmu_sc0005637.1_g000001 Rmu_sc0015000.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036890 Rroxscaffold_3G00264070
rosa_rugosa	Rorug06G0508300
rosa_samantha	Rh7AG115600 Rh7BG117900 Rh7BG118300 Rh7CG120800 Rh7CG186900 Rh7DG119300
rosa_wichuraiana	Rw2G007700 Rw7G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	413
Acc36I	ACCTGC	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	301
AciI	CCGC	2 cut(s)	20, 412
AcsI	RAATTY	1 cut(s)	139
AdeI	CACNNNGTG	1 cut(s)	323
AfaI	GTAC	2 cut(s)	122, 367
AfiI	CCNNNNNNNGG	1 cut(s)	418
AgsI	TTSAA	3 cut(s)	68, 103, 383
AjnI	CCWGG	1 cut(s)	165
AjuI	GAANNNNNNNTTGG	2 cut(s)	38, 70
AluBI	AGCT	1 cut(s)	418
AluI	AGCT	1 cut(s)	418
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	408
AsuHPI	GGTGA	2 cut(s)	89, 178
AvaII	GGWCC	1 cut(s)	408
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	350
BciT130I	CCWGG	1 cut(s)	167
BfuAI	ACCTGC	1 cut(s)	413
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
BmcAI	AGTACT	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	408
BmgT120I	GGNCC	1 cut(s)	408
BmiI	GGNNCC	1 cut(s)	410
BmrFI	CCNGG	1 cut(s)	167
Bsa29I	ATCGAT	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse1I	ACTGG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	167
BseCI	ATCGAT	1 cut(s)	97
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseNI	ACTGG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	164
BshFI	GGCC	1 cut(s)	44
BshVI	ATCGAT	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	418
BsnI	GGCC	1 cut(s)	44
BspACI	CCGC	2 cut(s)	20, 412
BspANI	GGCC	1 cut(s)	44
BspDI	ATCGAT	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	410
BspMI	ACCTGC	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	3 cut(s)	232, 286, 396
Bst6I	CTCTTC	1 cut(s)	63
BstC8I	GCNNGC	2 cut(s)	416, 420
BstDEI	CTNAG	2 cut(s)	332, 437
BstF5I	GGATG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	164
Bsu15I	ATCGAT	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	44
BsuTUI	ATCGAT	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	28
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	1 cut(s)	328
BveI	ACCTGC	1 cut(s)	413
Cac8I	GCNNGC	2 cut(s)	416, 420
Cfr13I	GGNCC	1 cut(s)	408
ClaI	ATCGAT	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	121, 366
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	5 cut(s)	44, 117, 155, 331, 418
CviKI_1	RGCY	5 cut(s)	44, 117, 155, 331, 418
CviQI	GTAC	2 cut(s)	121, 366
DdeI	CTNAG	2 cut(s)	332, 437
DraI	TTTAAA	1 cut(s)	270
DraIII	CACNNNGTG	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	165
FaeI	CATG	1 cut(s)	130
FaiI	YATR	7 cut(s)	109, 111, 128, 210, 221, 228, 248
FatI	CATG	1 cut(s)	126
FauI	CCCGC	1 cut(s)	419
FblI	GTMKAC	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	130
HinfI	GANTC	2 cut(s)	94, 170
HphI	GGTGA	2 cut(s)	89, 178
Hpy166II	GTNNAC	3 cut(s)	132, 282, 302
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	3 cut(s)	132, 282, 302
HpyAV	CCTTC	4 cut(s)	97, 107, 142, 193
HpyCH4III	ACNGT	3 cut(s)	232, 286, 396
HpyCH4V	TGCA	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	2 cut(s)	332, 437
Hsp92II	CATG	1 cut(s)	130
LpnPI	CCDG	9 cut(s)	152, 179, 248, 277, 290, 334, 404, 408, 428
Lsp1109I	GCAGC	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	427
MboII	GAAGA	3 cut(s)	80, 103, 208
MluCI	AATT	2 cut(s)	139, 383
MnlI	CCTC	5 cut(s)	19, 64, 68, 321, 353
MseI	TTAA	3 cut(s)	30, 144, 269
MspA1I	CMGCKG	1 cut(s)	418
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	123
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	1 cut(s)	410
NspI	RCATGY	1 cut(s)	130
PaqCI	CACCTGC	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	94, 170
PfoI	TCCNGGA	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	410
PspPI	GGNCC	1 cut(s)	408
PvuII	CAGCTG	1 cut(s)	418
RsaI	GTAC	2 cut(s)	122, 367
RsaNI	GTAC	2 cut(s)	121, 366
SaqAI	TTAA	3 cut(s)	30, 144, 269
SatI	GCNGC	1 cut(s)	153
Sau96I	GGNCC	1 cut(s)	408
ScaI	AGTACT	1 cut(s)	367
ScrFI	CCNGG	1 cut(s)	167
SetI	ASST	6 cut(s)	30, 79, 108, 185, 420, 427
SinI	GGWCC	1 cut(s)	408
Sse9I	AATT	2 cut(s)	139, 383
SsiI	CCGC	2 cut(s)	20, 412
SspI	AATATT	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	3 cut(s)	232, 286, 396
TaqI	TCGA	2 cut(s)	97, 136
TasI	AATT	2 cut(s)	139, 383
TatI	WGTACW	2 cut(s)	120, 365
TfiI	GAWTC	2 cut(s)	94, 170
Tru1I	TTAA	3 cut(s)	30, 144, 269
Tru9I	TTAA	3 cut(s)	30, 144, 269
TscAI	CASTG	1 cut(s)	328
TseI	GCWGC	1 cut(s)	152
TspDTI	ATGAA	2 cut(s)	126, 208
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	408
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	1 cut(s)	130
XmiI	GTMKAC	1 cut(s)	301
ZrmI	AGTACT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.