Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000184.1

Orthogroup ID

OG0005007

Physical Location & Seq

Genomic Coordinates Reverse (-)

25616 .. 26474

Gene Structure 859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000184.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggccctaggaaaagcgctggaacaactcaaggtaacagagagcaagacagttgcaatagggcaaaagatggacttggtgttctatacgctgcagcttggtttcttttacatggattttgacctcatttctaagagcattgagaaagcgaaaaatttatttgaagagggaggtgattgggaaaggaagaatcgcttgaaggtatatgaaggcttgtactgcatgtccactcgaaattttaagaaggtagccgatttgttcctggattctatttctaccttcaccacttacacaatatttccctatgacatcttcatattttataccgtcctgacaagcattatatctttggacagagtttctttaaaacagaagcttgattctttggagcgtatatatgctttccatttgctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03050 ko04066 ko05010 ko05169 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03050 map04066 map05010 map05169

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

138

Amino Acids

16.13

Weight (kDa)

7.75

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24820 AT4G24820
fragaria_vesca	FvH4_3g25540
malus_domestica	MD06G1151500.v1.1 MD06G1156100.v1.1 MD14G1163300.v1.1
prunus_persica	Prupe.5G156700_v2.0.a1
pyrus_communis	pycom06g13920 pycom14g13590
rosa_chinensis	RchiOBHm_Chr5g0017921 RchiOBHm_Chr5g0044171 RchiOBHm_Chr5g0065961 RchiOBHm_Chr7g0191031 RchiOBHm_Chr7g0191061
rosa_laevigata	RLG00000004478
rosa_multiflora	Rmu_sc0000184.1_g000009 Rmu_sc0002080.1_g000014 Rmu_sc0005637.1_g000001 Rmu_sc0015000.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036890 Rroxscaffold_3G00264070
rosa_rugosa	Rorug06G0508300
rosa_samantha	Rh7AG115600 Rh7BG117900 Rh7BG118300 Rh7CG120800 Rh7CG186900 Rh7DG119300
rosa_wichuraiana	Rw2G007700 Rw7G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	154, 235
AfaI	GTAC	1 cut(s)	218
AfeI	AGCGCT	1 cut(s)	18
AgsI	TTSAA	2 cut(s)	164, 199
AjnI	CCWGG	1 cut(s)	261
AloI	GAACNNNNNNTCC	2 cut(s)	65, 97
AluBI	AGCT	2 cut(s)	97, 376
AluI	AGCT	2 cut(s)	97, 376
Aor51HI	AGCGCT	1 cut(s)	18
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	91, 94
ApoI	RAATTY	2 cut(s)	154, 235
AspA2I	CCTAGG	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	185, 274
AvrII	CCTAGG	1 cut(s)	7
BbvI	GCAGC	2 cut(s)	78, 106
BccI	CCATC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	263
BfaI	CTAG	1 cut(s)	8
BfmI	CTRYAG	2 cut(s)	92, 413
BfoI	RGCGCY	1 cut(s)	20
BisI	GCNGC	2 cut(s)	92, 95
BlnI	CCTAGG	1 cut(s)	7
BlsI	GCNGC	2 cut(s)	93, 96
Bme1390I	CCNGG	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	7
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	1 cut(s)	7
BseXI	GCAGC	2 cut(s)	78, 106
BshFI	GGCC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	5
BspMAI	CTGCAG	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	7
BssT1I	CCWWGG	1 cut(s)	7
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	52, 328
Bst6I	CTCTTC	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstNI	CCWGG	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	2 cut(s)	92, 413
BstV1I	GCAGC	2 cut(s)	78, 106
BsuRI	GGCC	1 cut(s)	5
CfoI	GCGC	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	112, 223
CviJI	RGCY	5 cut(s)	5, 97, 213, 251, 376
CviKI_1	RGCY	5 cut(s)	5, 97, 213, 251, 376
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	1 cut(s)	132
DraI	TTTAAA	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	7
Eco47III	AGCGCT	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	7
ErhI	CCWWGG	1 cut(s)	7
FaeI	CATG	2 cut(s)	115, 226
FalI	AAGNNNNNCTT	4 cut(s)	59, 91, 179, 211
FatI	CATG	2 cut(s)	111, 222
Fnu4HI	GCNGC	2 cut(s)	92, 95
Fsp4HI	GCNGC	2 cut(s)	92, 95
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	2 cut(s)	92, 95
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	115, 226
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	3 cut(s)	190, 266, 380
HphI	GGTGA	2 cut(s)	185, 274
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188III	TCNNGA	1 cut(s)	331
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	4 cut(s)	193, 203, 238, 289
HpyCH4III	ACNGT	2 cut(s)	52, 328
HpyCH4V	TGCA	3 cut(s)	56, 94, 222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	115, 226
HspAI	GCGC	1 cut(s)	17
LmnI	GCTCC	1 cut(s)	388
LpnPI	CCDG	4 cut(s)	5, 248, 275, 344
Lsp1109I	GCAGC	2 cut(s)	78, 106
MaeI	CTAG	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	34
MboII	GAAGA	3 cut(s)	176, 199, 304
MluCI	AATT	2 cut(s)	154, 235
MnlI	CCTC	3 cut(s)	134, 160, 164
MseI	TTAA	2 cut(s)	240, 365
MspR9I	CCNGG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	219
NlaIII	CATG	2 cut(s)	115, 226
NspI	RCATGY	1 cut(s)	226
PfeI	GAWTC	3 cut(s)	190, 266, 380
PfoI	TCCNGGA	1 cut(s)	261
PkrI	GCNGC	2 cut(s)	93, 96
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	96
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	240, 365
SatI	GCNGC	2 cut(s)	92, 95
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	263
SetI	ASST	8 cut(s)	36, 99, 126, 175, 204, 249, 281, 378
SfcI	CTRYAG	2 cut(s)	92, 413
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	2 cut(s)	154, 235
SspI	AATATT	1 cut(s)	297
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	2 cut(s)	52, 328
TaqI	TCGA	1 cut(s)	232
TasI	AATT	2 cut(s)	154, 235
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	3 cut(s)	190, 266, 380
Tru1I	TTAA	2 cut(s)	240, 365
Tru9I	TTAA	2 cut(s)	240, 365
TseI	GCWGC	2 cut(s)	91, 94
TspDTI	ATGAA	2 cut(s)	222, 304
XapI	RAATTY	2 cut(s)	154, 235
XceI	RCATGY	1 cut(s)	226
XmaJI	CCTAGG	1 cut(s)	7
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.