Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005007

Physical Location & Seq

Genomic Coordinates Forward (+)

8816060 .. 8817286

Gene Structure 1227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG118300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGCGAAGGCATTTGACCTGACAGTGAATTTCATTGATCTGGAGCTGTCTCGATTCATTGCAGCAGGGAAACTCCACTGCAAGATAGATAAAGTTTCAGGTGTTCTAGAAACGAATCGTCCGGATGGCAAGAATTCTCTGTATCAGGCAAGTAGGCAACTATCAAGCAAGGGGACTTCCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03050 ko04066 ko05010 ko05169 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03050 map04066 map05010 map05169

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

61

Amino Acids

6.73

Weight (kDa)

9.3

Isoelectric Point (pI)

12.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	1 - 39	1.4e-08	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24820 AT4G24820
fragaria_vesca	FvH4_3g25540
malus_domestica	MD06G1151500.v1.1 MD06G1156100.v1.1 MD14G1163300.v1.1
prunus_persica	Prupe.5G156700_v2.0.a1
pyrus_communis	pycom06g13920 pycom14g13590
rosa_chinensis	RchiOBHm_Chr5g0017921 RchiOBHm_Chr5g0044171 RchiOBHm_Chr5g0065961 RchiOBHm_Chr7g0191031 RchiOBHm_Chr7g0191061
rosa_laevigata	RLG00000004478
rosa_multiflora	Rmu_sc0000184.1_g000009 Rmu_sc0002080.1_g000014 Rmu_sc0005637.1_g000001 Rmu_sc0015000.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036890 Rroxscaffold_3G00264070
rosa_rugosa	Rorug06G0508300
rosa_samantha	Rh7AG115600 Rh7BG117900 Rh7BG118300 Rh7CG120800 Rh7CG186900 Rh7DG119300
rosa_wichuraiana	Rw2G007700 Rw7G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	121
AcsI	RAATTY	2 cut(s)	28, 133
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw26I	GTCTC	1 cut(s)	54
Aor13HI	TCCGGA	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	2 cut(s)	28, 133
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	107
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	62
BsaWI	WCCGGW	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	57
BseAI	TCCGGA	1 cut(s)	121
BseGI	GGATG	1 cut(s)	130
BseMI	GCAATG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	54
Bsp13I	TCCGGA	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	37
BspEI	TCCGGA	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	57
BssMI	GATC	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	1 cut(s)	40
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	30, 76
CviJI	RGCY	1 cut(s)	46
CviKI_1	RGCY	1 cut(s)	46
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
EcoRI	GAATTC	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	62
HapII	CCGG	1 cut(s)	122
HinfI	GANTC	2 cut(s)	54, 115
HpaII	CCGG	1 cut(s)	122
Hpy188III	TCNNGA	4 cut(s)	41, 51, 107, 122
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	62, 81
Kpn2I	TCCGGA	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	6 cut(s)	26, 32, 51, 84, 131, 135
Lsp1109I	GCAGC	1 cut(s)	74
MaeI	CTAG	1 cut(s)	107
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MluCI	AATT	2 cut(s)	28, 133
MroI	TCCGGA	1 cut(s)	121
MspI	CCGG	1 cut(s)	122
NdeII	GATC	1 cut(s)	37
PfeI	GAWTC	2 cut(s)	54, 115
PkrI	GCNGC	1 cut(s)	64
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	37
SetI	ASST	3 cut(s)	21, 48, 103
Sse9I	AATT	2 cut(s)	28, 133
SspMI	CTAG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	52
TasI	AATT	2 cut(s)	28, 133
TfiI	GAWTC	2 cut(s)	54, 115
TscAI	CASTG	2 cut(s)	30, 83
TseI	GCWGC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	22, 46
TspRI	CASTG	2 cut(s)	30, 83
XapI	RAATTY	2 cut(s)	28, 133
XbaI	TCTAGA	1 cut(s)	106
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.