Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002080.1

Orthogroup ID

OG0005007

Physical Location & Seq

Genomic Coordinates Reverse (-)

56203 .. 58719

Gene Structure 2517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002080.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgaaacctaaccgcaaacccagatctctcccttcatctctcatcttgtttcctcttcttctcttcatccccacctcattgatgaaaaggccgatgccaacaatcctgtcatcagccaaggaggaggacggcgaggaatttgatgaggaattggaggagtctgatgatgatgacgtggtggaaaatgaagaagaagaagatgaagatgaggaggaggaggaggaggaagaagaagaaaatgtagaagaagaagaaggtggaggcaagagcgaaatcgaggatgcgacctcctacaagtcgctggtcactctggtctctgtggcttctagcgaaggaagactagaagagttccacaccgaaacgatgacggatgaggcgtcggggaatctggagtactatgtgctgaagtgggtatcaatggtgtttggtatcatctgcatcttatatgggattgccgatgttgaagaaaacctgggagaaagtgaagtcagagaagctcatttggccaagtccctgttcttcatccgtataagtgacaaggaaaaagcgctggaacaactccaggtaacagaaagcaagacagttgcagtagggcaaaagatggacttggtgttctatacgctgcaacttggtttcttttacatggattttgacctcatttctaagagcattgagaaagcgaaaaatttatttgaagagggaggtgattgggaaaggaagaatcgcttgaaggtatatgaaggcttttactgcatgtccactccaaattttaagaaggcagccgttttgttcctggatttcatttctaccttcaccacttacgaaatatttccctatgacatcttcatattttacaccgtcctgacaagcattatatctttggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03050 ko04066 ko05010 ko05169 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03050 map04066 map05010 map05169

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

295

Amino Acids

33.95

Weight (kDa)

4.21

Isoelectric Point (pI)

64.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24820 AT4G24820
fragaria_vesca	FvH4_3g25540
malus_domestica	MD06G1151500.v1.1 MD06G1156100.v1.1 MD14G1163300.v1.1
prunus_persica	Prupe.5G156700_v2.0.a1
pyrus_communis	pycom06g13920 pycom14g13590
rosa_chinensis	RchiOBHm_Chr5g0017921 RchiOBHm_Chr5g0044171 RchiOBHm_Chr5g0065961 RchiOBHm_Chr7g0191031 RchiOBHm_Chr7g0191061
rosa_laevigata	RLG00000004478
rosa_multiflora	Rmu_sc0000184.1_g000009 Rmu_sc0002080.1_g000014 Rmu_sc0005637.1_g000001 Rmu_sc0015000.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036890 Rroxscaffold_3G00264070
rosa_rugosa	Rorug06G0508300
rosa_samantha	Rh7AG115600 Rh7BG117900 Rh7BG118300 Rh7CG120800 Rh7CG186900 Rh7DG119300
rosa_wichuraiana	Rw2G007700 Rw7G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	13
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	3 cut(s)	137, 685, 766
AcuI	CTGAAG	1 cut(s)	425
AcyI	GRCGYC	1 cut(s)	377
AfaI	GTAC	1 cut(s)	395
AfeI	AGCGCT	1 cut(s)	549
AgsI	TTSAA	3 cut(s)	464, 695, 730
AjiI	CACGTC	1 cut(s)	175
AjnI	CCWGG	3 cut(s)	471, 561, 792
AjuI	GAANNNNNNNTTGG	2 cut(s)	500, 532
AloI	GAACNNNNNNTCC	2 cut(s)	596, 628
AluBI	AGCT	1 cut(s)	497
AluI	AGCT	1 cut(s)	497
Alw26I	GTCTC	1 cut(s)	319
Aor51HI	AGCGCT	1 cut(s)	549
AoxI	GGCC	2 cut(s)	89, 504
ApeKI	GCWGC	2 cut(s)	622, 779
ApoI	RAATTY	3 cut(s)	137, 685, 766
Asp700I	GAANNNNTTC	1 cut(s)	828
AspLEI	GCGC	1 cut(s)	550
AsuHPI	GGTGA	2 cut(s)	716, 805
BalI	TGGCCA	1 cut(s)	506
BbsI	GAAGAC	1 cut(s)	343
BbvI	GCAGC	2 cut(s)	609, 791
BccI	CCATC	1 cut(s)	595
BceAI	ACGGC	2 cut(s)	145, 767
BciT130I	CCWGG	3 cut(s)	473, 563, 794
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	2 cut(s)	327, 341
BfoI	RGCGCY	1 cut(s)	551
BglII	AGATCT	1 cut(s)	23
BisI	GCNGC	2 cut(s)	623, 780
BlsI	GCNGC	2 cut(s)	624, 781
BmcAI	AGTACT	1 cut(s)	395
Bme1390I	CCNGG	3 cut(s)	473, 563, 794
BmgBI	CACGTC	1 cut(s)	175
BmrFI	CCNGG	3 cut(s)	473, 563, 794
BmsI	GCATC	3 cut(s)	84, 271, 447
BpiI	GAAGAC	1 cut(s)	343
BpmI	CTGGAG	2 cut(s)	410, 545
BsaHI	GRCGYC	1 cut(s)	377
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	2 cut(s)	117, 472
BseBI	CCWGG	3 cut(s)	473, 563, 794
BseDI	CCNNGG	2 cut(s)	117, 472
BseGI	GGATG	4 cut(s)	66, 286, 376, 522
BseRI	GAGGAG	7 cut(s)	137, 170, 224, 227, 230, 233, 236
BseXI	GCAGC	2 cut(s)	609, 791
BshFI	GGCC	2 cut(s)	91, 506
BslFI	GGGAC	1 cut(s)	496
BsmAI	GTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	496
BsnI	GGCC	2 cut(s)	91, 506
Bso31I	GGTCTC	1 cut(s)	319
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	2 cut(s)	91, 506
BspTNI	GGTCTC	1 cut(s)	319
BssECI	CCNNGG	2 cut(s)	117, 472
BssMI	GATC	1 cut(s)	23
BssNI	GRCGYC	1 cut(s)	377
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	3 cut(s)	473, 563, 794
Bst4CI	ACNGT	2 cut(s)	583, 859
Bst6I	CTCTTC	4 cut(s)	60, 68, 339, 690
BstACI	GRCGYC	1 cut(s)	377
BstDEI	CTNAG	1 cut(s)	663
BstF5I	GGATG	4 cut(s)	66, 286, 376, 522
BstH2I	RGCGCY	1 cut(s)	551
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	1 cut(s)	26
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 750
BstNI	CCWGG	3 cut(s)	473, 563, 794
BstNSI	RCATGY	1 cut(s)	757
BstSCI	CCNGG	3 cut(s)	471, 561, 792
BstV1I	GCAGC	2 cut(s)	609, 791
BstV2I	GAAGAC	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	91, 506
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	4 cut(s)	66, 286, 376, 522
CfoI	GCGC	1 cut(s)	550
CseI	GACGC	1 cut(s)	366
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	2 cut(s)	643, 754
CviJI	RGCY	7 cut(s)	91, 116, 323, 497, 506, 744, 782
CviKI_1	RGCY	7 cut(s)	91, 116, 323, 497, 506, 744, 782
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	1 cut(s)	663
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	4 cut(s)	60, 68, 339, 690
EarI	CTCTTC	4 cut(s)	60, 68, 339, 690
Eco130I	CCWWGG	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	319
Eco47III	AGCGCT	1 cut(s)	549
Eco57I	CTGAAG	1 cut(s)	425
EcoRII	CCWGG	3 cut(s)	471, 561, 792
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	2 cut(s)	646, 757
FalI	AAGNNNNNCTT	4 cut(s)	590, 622, 710, 742
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	2 cut(s)	642, 753
Fnu4HI	GCNGC	2 cut(s)	623, 780
FokI	GGATG	4 cut(s)	53, 293, 383, 509
Fsp4HI	GCNGC	2 cut(s)	623, 780
FspBI	CTAG	2 cut(s)	327, 341
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	2 cut(s)	623, 780
GsuI	CTGGAG	2 cut(s)	410, 545
HaeII	RGCGCY	1 cut(s)	551
HaeIII	GGCC	2 cut(s)	91, 506
HgaI	GACGC	1 cut(s)	366
HhaI	GCGC	1 cut(s)	550
Hin1I	GRCGYC	1 cut(s)	377
Hin1II	CATG	2 cut(s)	646, 757
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HinfI	GANTC	3 cut(s)	158, 385, 721
HphI	GGTGA	2 cut(s)	716, 805
Hpy166II	GTNNAC	1 cut(s)	759
Hpy188I	TCNGA	2 cut(s)	163, 491
Hpy188III	TCNNGA	2 cut(s)	389, 862
Hpy8I	GTNNAC	1 cut(s)	759
Hpy99I	CGWCG	1 cut(s)	382
HpyAV	CCTTC	7 cut(s)	42, 248, 326, 724, 734, 769, 820
HpyCH4III	ACNGT	2 cut(s)	583, 859
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	4 cut(s)	438, 587, 625, 753
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 750
HpyF3I	CTNAG	1 cut(s)	663
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	377
Hsp92II	CATG	2 cut(s)	646, 757
HspAI	GCGC	1 cut(s)	548
Kzo9I	GATC	1 cut(s)	23
Lsp1109I	GCAGC	2 cut(s)	609, 791
LweI	GCATC	3 cut(s)	84, 271, 447
MaeI	CTAG	2 cut(s)	327, 341
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	3 cut(s)	304, 533, 565
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MflI	RGATCY	1 cut(s)	23
MlsI	TGGCCA	1 cut(s)	506
MluCI	AATT	4 cut(s)	137, 149, 685, 766
MluNI	TGGCCA	1 cut(s)	506
MlyI	GAGTC	1 cut(s)	167
Mox20I	TGGCCA	1 cut(s)	506
MroXI	GAANNNNTTC	1 cut(s)	828
MscI	TGGCCA	1 cut(s)	506
MseI	TTAA	1 cut(s)	771
Msp20I	TGGCCA	1 cut(s)	506
MspR9I	CCNGG	3 cut(s)	473, 563, 794
MvaI	CCWGG	3 cut(s)	473, 563, 794
MwoI	GCNNNNNNNGC	2 cut(s)	503, 750
NdeII	GATC	1 cut(s)	23
NlaIII	CATG	2 cut(s)	646, 757
NmuCI	GTSAC	2 cut(s)	304, 533
NspI	RCATGY	1 cut(s)	757
PcsI	WCGNNNNNNNCGW	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	828
PfeI	GAWTC	2 cut(s)	385, 721
PfoI	TCCNGGA	1 cut(s)	792
PkrI	GCNGC	2 cut(s)	624, 781
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp6I	CCWGG	3 cut(s)	471, 561, 792
PspGI	CCWGG	3 cut(s)	471, 561, 792
PsuI	RGATCY	1 cut(s)	23
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SaqAI	TTAA	1 cut(s)	771
SatI	GCNGC	2 cut(s)	623, 780
Sau3AI	GATC	1 cut(s)	23
ScaI	AGTACT	1 cut(s)	395
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	3 cut(s)	473, 563, 794
SfaNI	GCATC	3 cut(s)	84, 271, 447
Sse9I	AATT	4 cut(s)	137, 149, 685, 766
SsiI	CCGC	1 cut(s)	13
SspI	AATATT	1 cut(s)	828
SspMI	CTAG	2 cut(s)	327, 341
StyD4I	CCNGG	3 cut(s)	471, 561, 792
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	583, 859
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	276
TasI	AATT	4 cut(s)	137, 149, 685, 766
TatI	WGTACW	1 cut(s)	393
TfiI	GAWTC	2 cut(s)	385, 721
Tru1I	TTAA	1 cut(s)	771
Tru9I	TTAA	1 cut(s)	771
TseFI	GTSAC	2 cut(s)	304, 533
TseI	GCWGC	2 cut(s)	622, 779
Tsp45I	GTSAC	2 cut(s)	304, 533
TspGWI	ACGGA	2 cut(s)	383, 515
XapI	RAATTY	3 cut(s)	137, 685, 766
XceI	RCATGY	1 cut(s)	757
XmnI	GAANNNNTTC	1 cut(s)	828
XspI	CTAG	2 cut(s)	327, 341
ZrmI	AGTACT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.