Rw7G010050

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
9319411 .. 9322512
3102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G010050.1

Sequence Viewer

Length: 1122 bp
ATGGAAGGTCAAGAAGAGACTCAGCAACCTCATCTGCAGCTAGCGAACAAGCTCTTCCTTCTGTCGCACCCGGACGTTCAAGACATGAGAAGGTCCGATATGGCGCCTTTGTATGAAACCCTAGTTTCGGAATCGGTGCTGGAGATGGACCAGGGCGTTCTGGACTCCATGAAGGCCAAGATCCAGGAGGAGCTCAAGAAGCTTGATGAAAAGATTGCCGATGCTGAAGAAAACCTGGGAGAAAGTGAAGTCAGAGAAGCTCATTTGGCCAAGTCCCTGTTCTTCATCCGTATAGGTGACAAGGAAAAAGCGCTGGAACAACTCAAGGTAACAGAAAGCAAGACAGTTGCAGTAGGGCAAAAGATGGACTTGGTGTTCTATACGCTGCAGCTTGGTTTCTTTTACATGGATTTTGACCTCATTTCTAAGAGCATTGAGAAAGCGAAAAATTTATTTGAAGAGGGAGGTGATTGGGAAAGGAAGAATCGTTTGAAGGTATATGAAGGCTTGTACTGCATGTCCACTCGAAATTTTAAGAAGGCAGCCGATTTGTTCCTGGATTCTATTTCTACCTTCACCACTTACGAAATATTTCCCTATGACATCTTCATATTTTATACCGTCCTGACAAGCATTATATCTTTGGACAGAGTTTCTTTAAAACAGAAGGTGGTGGATGCTCCAGAGATACTAACGGTTATTGGGAAAATCCCGTACTTGTCTGAGTTTTTGAACTCTCTTTATGATTGTCAGTACAAGTCATTCTTCGCAGCATTTGCTGGTCTGACAGAGCAGATAAAGCTGGATCGTTATTTGCATCCACACTTCCGGTATTACATGAGGGAAATCAGAACCGTTGTTTATTCTCAATTTTTGGAGTCCTACAAGAGTGTCACTATTGAAGCAATGGCAAAGGCATTTGGCGTGACAGTGGATTTCATTGATCTGGAGCTGTCTCGGTTCATTGCAGCAGGGAAACTCCACTGCAAGATAGATAAAGTTTCAGGTGTTCTAGAAACTAATCGTCCGGATGCCAAGAATTCTCTGTATCAGGCAACTATCAAGCAAGGGGACTTCCTACTGAACAGGATCCAGAAGTTGTCGCGTGTGATTGATCTATAG

Protein Analysis

373

Amino Acids

43.08

Weight (kDa)

5.49

Isoelectric Point (pI)

35.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPN7 PF10602 50 - 223 1.1e-64 26S proteasome subunit RPN7
PCI PF01399 264 - 341 3.7e-18 PCI domain
RPN7_PSMD6_C PF21154 350 - 371 7.3e-13 26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AccII CGCG 1 cut(s) 1105
AccIII TCCGGA 1 cut(s) 1027
AclWI GGATC 4 cut(s) 175, 813, 1084, 1097
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 3 cut(s) 448, 529, 1039
AcuI CTGAAG 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 104
AfaI GTAC 3 cut(s) 512, 716, 755
AfeI AGCGCT 1 cut(s) 312
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 5 cut(s) 80, 458, 493, 733, 902
AjnI CCWGG 4 cut(s) 150, 183, 234, 555
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AloI GAACNNNNNNTCC 2 cut(s) 359, 391
AluBI AGCT 8 cut(s) 40, 52, 193, 202, 260, 391, 802, 952
AluI AGCT 8 cut(s) 40, 52, 193, 202, 260, 391, 802, 952
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 2 cut(s) 11, 960
AlwI GGATC 4 cut(s) 175, 813, 1084, 1097
Aor13HI TCCGGA 1 cut(s) 1027
Aor51HI AGCGCT 1 cut(s) 312
AoxI GGCC 2 cut(s) 174, 267
ApeKI GCWGC 6 cut(s) 37, 385, 388, 542, 770, 968
ApoI RAATTY 3 cut(s) 448, 529, 1039
Asp700I GAANNNNTTC 1 cut(s) 591
AspLEI GCGC 2 cut(s) 106, 313
AspS9I GGNCC 2 cut(s) 93, 148
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 3 cut(s) 308, 479, 568
AsuNHI GCTAGC 1 cut(s) 40
AvaII GGWCC 2 cut(s) 93, 148
BalI TGGCCA 1 cut(s) 269
BamHI GGATCC 1 cut(s) 1089
BanI GGYRCC 1 cut(s) 103
BanII GRGCYC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 6 cut(s) 49, 372, 400, 554, 782, 980
BccI CCATC 2 cut(s) 139, 358
BciT130I CCWGG 4 cut(s) 152, 185, 236, 557
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 2 cut(s) 11, 960
BfaI CTAG 3 cut(s) 41, 122, 1013
BfmI CTRYAG 3 cut(s) 35, 386, 1118
BfoI RGCGCY 2 cut(s) 107, 314
BisI GCNGC 6 cut(s) 38, 386, 389, 543, 771, 969
BlsI GCNGC 6 cut(s) 39, 387, 390, 544, 772, 970
Bme1390I CCNGG 5 cut(s) 71, 152, 185, 236, 557
Bme18I GGWCC 2 cut(s) 93, 148
BmgT120I GGNCC 2 cut(s) 93, 148
BmiI GGNNCC 2 cut(s) 105, 1091
BmrFI CCNGG 5 cut(s) 71, 152, 185, 236, 557
BmsI GCATC 4 cut(s) 211, 667, 826, 1021
BmtI GCTAGC 1 cut(s) 44
BpmI CTGGAG 3 cut(s) 161, 666, 968
BpuEI CTTGAG 2 cut(s) 179, 308
BpuMI CCSGG 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 151, 235
BsaWI WCCGGW 2 cut(s) 828, 1027
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse3DI GCAATG 2 cut(s) 912, 963
BseAI TCCGGA 1 cut(s) 1027
BseBI CCWGG 4 cut(s) 152, 185, 236, 557
BseDI CCNNGG 2 cut(s) 151, 235
BseGI GGATG 4 cut(s) 285, 682, 817, 1036
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMI GCAATG 2 cut(s) 912, 963
BseMII CTCAG 2 cut(s) 35, 714
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 6 cut(s) 49, 372, 400, 554, 782, 980
Bsh1236I CGCG 1 cut(s) 1105
BshFI GGCC 2 cut(s) 176, 269
BshNI GGYRCC 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 195
BsiSI CCGG 3 cut(s) 71, 829, 1028
BslFI GGGAC 2 cut(s) 259, 1085
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 2 cut(s) 11, 960
BsmFI GGGAC 2 cut(s) 259, 1085
BsnI GGCC 2 cut(s) 176, 269
Bsp1286I GDGCHC 1 cut(s) 195
Bsp13I TCCGGA 1 cut(s) 1027
Bsp143I GATC 5 cut(s) 180, 805, 943, 1089, 1114
BspANI GGCC 2 cut(s) 176, 269
BspCNI CTCAG 2 cut(s) 34, 715
BspEI TCCGGA 1 cut(s) 1027
BspFNI CGCG 1 cut(s) 1105
BspLI GGNNCC 2 cut(s) 105, 1091
BspMAI CTGCAG 2 cut(s) 39, 390
BspOI GCTAGC 1 cut(s) 44
BspPI GGATC 4 cut(s) 175, 813, 1084, 1097
BspQI GCTCTTC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 103
BsrDI GCAATG 2 cut(s) 912, 963
BssECI CCNNGG 2 cut(s) 151, 235
BssMI GATC 5 cut(s) 180, 805, 943, 1089, 1114
BssNI GRCGYC 1 cut(s) 104
Bst2UI CCWGG 4 cut(s) 152, 185, 236, 557
Bst4CI ACNGT 5 cut(s) 346, 622, 697, 856, 931
Bst6I CTCTTC 3 cut(s) 9, 59, 453
BstACI GRCGYC 1 cut(s) 104
BstAPI GCANNNNNTGC 1 cut(s) 776
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 3 cut(s) 21, 426, 723
BstF5I GGATG 4 cut(s) 285, 682, 817, 1036
BstFNI CGCG 1 cut(s) 1105
BstH2I RGCGCY 2 cut(s) 107, 314
BstHHI GCGC 2 cut(s) 106, 313
BstKTI GATC 5 cut(s) 183, 808, 946, 1092, 1117
BstMAI GTCTC 2 cut(s) 11, 960
BstMBI GATC 5 cut(s) 180, 805, 943, 1089, 1114
BstMWI GCNNNNNNNGC 5 cut(s) 199, 266, 513, 776, 799
BstNI CCWGG 4 cut(s) 152, 185, 236, 557
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 5 cut(s) 69, 150, 183, 234, 555
BstSFI CTRYAG 3 cut(s) 35, 386, 1118
BstUI CGCG 1 cut(s) 1105
BstV1I GCAGC 6 cut(s) 49, 372, 400, 554, 782, 980
BstX2I RGATCY 2 cut(s) 180, 1089
BstYI RGATCY 2 cut(s) 180, 1089
BsuRI GGCC 2 cut(s) 176, 269
BtsCI GGATG 4 cut(s) 285, 682, 817, 1036
BtsI GCAGTG 1 cut(s) 982
BtsIMutI CAGTG 2 cut(s) 936, 982
Cac8I GCNNGC 1 cut(s) 42
CfoI GCGC 2 cut(s) 106, 313
Cfr13I GGNCC 2 cut(s) 93, 148
Csp6I GTAC 3 cut(s) 511, 715, 754
CviAII CATG 5 cut(s) 85, 169, 406, 517, 838
CviQI GTAC 3 cut(s) 511, 715, 754
DdeI CTNAG 3 cut(s) 21, 426, 723
DinI GGCGCC 1 cut(s) 105
DpnI GATC 5 cut(s) 182, 807, 945, 1091, 1116
DpnII GATC 5 cut(s) 180, 805, 943, 1089, 1114
DraI TTTAAA 1 cut(s) 660
EaeI YGGCCR 1 cut(s) 267
Eam1104I CTCTTC 3 cut(s) 9, 59, 453
EarI CTCTTC 3 cut(s) 9, 59, 453
Ecl136II GAGCTC 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 93, 148
Eco47III AGCGCT 1 cut(s) 312
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 246
EcoICRI GAGCTC 1 cut(s) 193
EcoRI GAATTC 1 cut(s) 1039
EcoRII CCWGG 4 cut(s) 150, 183, 234, 555
EcoT38I GRGCYC 1 cut(s) 195
EgeI GGCGCC 1 cut(s) 105
EheI GGCGCC 1 cut(s) 105
FaeI CATG 5 cut(s) 88, 172, 409, 520, 841
FalI AAGNNNNNCTT 4 cut(s) 353, 385, 749, 781
FaqI GGGAC 2 cut(s) 259, 1085
FatI CATG 5 cut(s) 84, 168, 405, 516, 837
Fnu4HI GCNGC 6 cut(s) 38, 386, 389, 543, 771, 969
FokI GGATG 4 cut(s) 272, 689, 804, 1043
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 6 cut(s) 38, 386, 389, 543, 771, 969
FspBI CTAG 3 cut(s) 41, 122, 1013
GlaI GCGC 2 cut(s) 105, 312
GluI GCNGC 6 cut(s) 38, 386, 389, 543, 771, 969
GsuI CTGGAG 3 cut(s) 161, 666, 968
HaeII RGCGCY 2 cut(s) 107, 314
HaeIII GGCC 2 cut(s) 176, 269
HapII CCGG 3 cut(s) 71, 829, 1028
HhaI GCGC 2 cut(s) 106, 313
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 5 cut(s) 88, 172, 409, 520, 841
Hin6I GCGC 2 cut(s) 104, 311
HinP1I GCGC 2 cut(s) 104, 311
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 6 cut(s) 19, 131, 164, 484, 560, 878
HpaII CCGG 3 cut(s) 71, 829, 1028
HphI GGTGA 3 cut(s) 308, 479, 568
Hpy166II GTNNAC 1 cut(s) 522
Hpy188I TCNGA 6 cut(s) 97, 130, 254, 724, 786, 851
Hpy8I GTNNAC 1 cut(s) 522
HpyAV CCTTC 8 cut(s) 68, 84, 166, 487, 497, 532, 583, 661
HpyCH4III ACNGT 5 cut(s) 346, 622, 697, 856, 931
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 7 cut(s) 37, 350, 388, 516, 817, 968, 987
HpyF10VI GCNNNNNNNGC 5 cut(s) 199, 266, 513, 776, 799
HpyF3I CTNAG 3 cut(s) 21, 426, 723
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 5 cut(s) 88, 172, 409, 520, 841
HspAI GCGC 2 cut(s) 104, 311
KasI GGCGCC 1 cut(s) 103
Kpn2I TCCGGA 1 cut(s) 1027
Kzo9I GATC 5 cut(s) 180, 805, 943, 1089, 1114
LguI GCTCTTC 1 cut(s) 59
LmnI GCTCC 3 cut(s) 190, 685, 949
Lsp1109I GCAGC 6 cut(s) 49, 372, 400, 554, 782, 980
LweI GCATC 4 cut(s) 211, 667, 826, 1021
MaeI CTAG 3 cut(s) 41, 122, 1013
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 4 cut(s) 296, 328, 892, 925
MalI GATC 5 cut(s) 182, 807, 945, 1091, 1116
MboI GATC 5 cut(s) 180, 805, 943, 1089, 1114
MboII GAAGA 8 cut(s) 26, 46, 239, 274, 470, 493, 598, 757
MflI RGATCY 2 cut(s) 180, 1089
MhlI GDGCHC 1 cut(s) 195
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 4 cut(s) 448, 529, 869, 1039
MluNI TGGCCA 1 cut(s) 269
Mly113I GGCGCC 1 cut(s) 104
MlyI GAGTC 3 cut(s) 13, 158, 887
MnlI CCTC 6 cut(s) 39, 181, 428, 454, 458, 834
Mox20I TGGCCA 1 cut(s) 269
MroI TCCGGA 1 cut(s) 1027
MroXI GAANNNNTTC 1 cut(s) 591
MscI TGGCCA 1 cut(s) 269
MseI TTAA 2 cut(s) 534, 659
Msp20I TGGCCA 1 cut(s) 269
MspI CCGG 3 cut(s) 71, 829, 1028
MspR9I CCNGG 5 cut(s) 71, 152, 185, 236, 557
MvaI CCWGG 4 cut(s) 152, 185, 236, 557
MvnI CGCG 1 cut(s) 1105
MwoI GCNNNNNNNGC 5 cut(s) 199, 266, 513, 776, 799
NarI GGCGCC 1 cut(s) 104
NciI CCSGG 1 cut(s) 71
NdeII GATC 5 cut(s) 180, 805, 943, 1089, 1114
NheI GCTAGC 1 cut(s) 40
NlaIII CATG 5 cut(s) 88, 172, 409, 520, 841
NlaIV GGNNCC 2 cut(s) 105, 1091
NmuCI GTSAC 3 cut(s) 296, 892, 925
NspI RCATGY 1 cut(s) 520
PciSI GCTCTTC 1 cut(s) 59
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 3 cut(s) 131, 484, 560
PfoI TCCNGGA 2 cut(s) 183, 555
PkrI GCNGC 6 cut(s) 39, 387, 390, 544, 772, 970
PleI GAGTC 3 cut(s) 13, 158, 886
PluTI GGCGCC 1 cut(s) 107
PpsI GAGTC 3 cut(s) 13, 158, 886
Psp124BI GAGCTC 1 cut(s) 195
Psp6I CCWGG 4 cut(s) 150, 183, 234, 555
PspGI CCWGG 4 cut(s) 150, 183, 234, 555
PspN4I GGNNCC 2 cut(s) 105, 1091
PspPI GGNCC 2 cut(s) 93, 148
PstI CTGCAG 2 cut(s) 39, 390
PsuI RGATCY 2 cut(s) 180, 1089
RsaI GTAC 3 cut(s) 512, 716, 755
RsaNI GTAC 3 cut(s) 511, 715, 754
SacI GAGCTC 1 cut(s) 195
SapI GCTCTTC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 534, 659
SatI GCNGC 6 cut(s) 38, 386, 389, 543, 771, 969
Sau3AI GATC 5 cut(s) 180, 805, 943, 1089, 1114
Sau96I GGNCC 2 cut(s) 93, 148
SchI GAGTC 3 cut(s) 13, 158, 887
ScrFI CCNGG 5 cut(s) 71, 152, 185, 236, 557
SduI GDGCHC 1 cut(s) 195
SfaNI GCATC 4 cut(s) 211, 667, 826, 1021
SfcI CTRYAG 3 cut(s) 35, 386, 1118
SfoI GGCGCC 1 cut(s) 105
SinI GGWCC 2 cut(s) 93, 148
SmlI CTYRAG 2 cut(s) 194, 323
SmoI CTYRAG 2 cut(s) 194, 323
Sse9I AATT 4 cut(s) 448, 529, 869, 1039
SspDI GGCGCC 1 cut(s) 103
SspI AATATT 1 cut(s) 591
SspMI CTAG 3 cut(s) 41, 122, 1013
SstI GAGCTC 1 cut(s) 195
StyD4I CCNGG 5 cut(s) 69, 150, 183, 234, 555
TaaI ACNGT 5 cut(s) 346, 622, 697, 856, 931
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 526
TasI AATT 4 cut(s) 448, 529, 869, 1039
TatI WGTACW 2 cut(s) 510, 753
TfiI GAWTC 3 cut(s) 131, 484, 560
Tru1I TTAA 2 cut(s) 534, 659
Tru9I TTAA 2 cut(s) 534, 659
TscAI CASTG 2 cut(s) 936, 989
TseFI GTSAC 3 cut(s) 296, 892, 925
TseI GCWGC 6 cut(s) 37, 385, 388, 542, 770, 968
Tsp45I GTSAC 3 cut(s) 296, 892, 925
TspDTI ATGAA 8 cut(s) 129, 185, 222, 274, 516, 598, 928, 952
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 2 cut(s) 936, 989
VpaK11BI GGWCC 2 cut(s) 93, 148
XapI RAATTY 3 cut(s) 448, 529, 1039
XbaI TCTAGA 1 cut(s) 1012
XceI RCATGY 1 cut(s) 520
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 3 cut(s) 41, 122, 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.