Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005007

Physical Location & Seq

Genomic Coordinates Reverse (-)

12453536 .. 12455788

Gene Structure 2253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29815

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGTCCACTCGAAATTTTAAGAAGGCAGCCGATTTGTTCCTGGATTCCATTTCTACCTTCACCACTTACACAATATTTCCCTATGACATCTTAATATTTTATACCGTCCTGACAAGCATTATATCTTTGGACAGAGTTTCTTTAAAACAGAAGCTTGATTCTTTGGAGCGTATATATGCTTTCCATTTGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03050 ko04066 ko05010 ko05169 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03050 map04066 map05010 map05169

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

64

Amino Acids

7.5

Weight (kDa)

8.05

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN7	PF10602	1 - 51	3e-15	26S proteasome subunit RPN7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24820 AT4G24820
fragaria_vesca	FvH4_3g25540
malus_domestica	MD06G1151500.v1.1 MD06G1156100.v1.1 MD14G1163300.v1.1
prunus_persica	Prupe.5G156700_v2.0.a1
pyrus_communis	pycom06g13920 pycom14g13590
rosa_chinensis	RchiOBHm_Chr5g0017921 RchiOBHm_Chr5g0044171 RchiOBHm_Chr5g0065961 RchiOBHm_Chr7g0191031 RchiOBHm_Chr7g0191061
rosa_laevigata	RLG00000004478
rosa_multiflora	Rmu_sc0000184.1_g000009 Rmu_sc0002080.1_g000014 Rmu_sc0005637.1_g000001 Rmu_sc0015000.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036890 Rroxscaffold_3G00264070
rosa_rugosa	Rorug06G0508300
rosa_samantha	Rh7AG115600 Rh7BG117900 Rh7BG118300 Rh7CG120800 Rh7CG186900 Rh7DG119300
rosa_wichuraiana	Rw2G007700 Rw7G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	191
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	106
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	39
BstSFI	CTRYAG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	38
CviJI	RGCY	2 cut(s)	29, 154
CviKI_1	RGCY	2 cut(s)	29, 154
DraI	TTTAAA	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	39
FaiI	YATR	6 cut(s)	84, 102, 122, 173, 175, 177
Fnu4HI	GCNGC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	2 cut(s)	44, 158
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	16, 67
HpyCH4III	ACNGT	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	3 cut(s)	26, 53, 122
Lsp1109I	GCAGC	1 cut(s)	38
MluCI	AATT	1 cut(s)	13
MseI	TTAA	3 cut(s)	18, 92, 143
MspR9I	CCNGG	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	41
PfeI	GAWTC	2 cut(s)	44, 158
PfoI	TCCNGGA	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	18, 92, 143
SatI	GCNGC	1 cut(s)	27
ScrFI	CCNGG	1 cut(s)	41
SetI	ASST	2 cut(s)	59, 156
SfcI	CTRYAG	1 cut(s)	191
SgeI	CNNG	6 cut(s)	21, 52, 53, 121, 126, 167
Sse9I	AATT	1 cut(s)	13
SspI	AATATT	2 cut(s)	75, 96
StyD4I	CCNGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	10
TasI	AATT	1 cut(s)	13
TfiI	GAWTC	2 cut(s)	44, 158
Tru1I	TTAA	3 cut(s)	18, 92, 143
Tru9I	TTAA	3 cut(s)	18, 92, 143
TseI	GCWGC	1 cut(s)	26
XapI	RAATTY	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.