RLG00000004478

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
59684319 .. 59687421
3103 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004478

Sequence Viewer

Length: 1161 bp
ATGGAAGGTCAAGAAGAGACTCAGCAACCTCATCTGCAGCTAGCGAACAAGCTCTTCCTTCTGTCGCACCCGGACGTTCAAGACATCGAGAAGGTCCGGCTCCGGGAGGAGGTTTTCGCCACCGTCAAAGCCGATGATATGGCGCCTTTGTATGAAACCCTAGTTTCGGAGTCGGTGCTGGAGATGGACCAGGGCGTTCTGGACTCCATGAAGGCCAAGATCCAGGAGGAGCTCAATAAGCTTGATGAAAAGATTGCCGATGCTGAAGAAAACTTGGGAGAAAGTGAAGTCAGAGAAGCTCATTTGGCCAAGTCCCTGTTCTTCATCCGTATAGGTGACAAGGAAAAAGCGCTGGAACAACTCAAGGTAACAGAAAGCAAGACAGTTGCAGTAGGGCAAAAGATGGACTTGGTGTTCTATACGCTGCAGCTTGGTTTCTTTTACATGGATTTTGACCTCATTTCTAAGAGCATTGAGAAAGCGAAAAATTTGTTTGAAGAGGGAGGTGATTGGGAAAGGAAGAATCGCTTGAAGGTATATGAAGGCTTGTACTGCATGTCGACTCGAAATTTTAAGAAGGCTGCCGATTTGTTCCTGGATTCCATTTCTACCTTCACCACTTACGAAATATTTCCCTATGACATCTTCATATTTTATACCGTCCTGACAAGCATTATATCTTTGGACAGAGTTTCTTTAAAACAGAAGGTGGTGGATGCTCCAGAGATACTAACGGTGATTGGGAAAATCCCTTACTTGTCTGAGTTTTTGAACTCTCTGTATGATTGTCAGTACAAGTCATTTTTCGCAGCATTTGCTGGTCTGACAGAGCAGATAAAGCTGGATCGTTATTTGCATCCACACTTCCGGTATTACATGAGGGAAATCAGAACCGTTGTTTATTCTCAATTTTTGGAGTCCTACAAGAGTGTCACTATTGAAGCAATGGCAAAGGCATTTGGCGTGACAGTGGATTTCATTGATCTGGAGCTGTCTCGGTTCATTGCAGCAGGGAAACTCCACTGCAAGATAGATAAAGTTTCAGGTGTTCTAGAAACTAATCGTCCGGATGCCAAGAATTCTCTGTATCAGGCAACTATCAAGCAAGGGGACTTCCTACTGAACAGGATCCAGAAGTTGTCGCGTGTGATTGATCTATAG

Protein Analysis

387

Amino Acids

44.52

Weight (kDa)

5.27

Isoelectric Point (pI)

34.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPN7 PF10602 63 - 236 1.2e-64 26S proteasome subunit RPN7
PCI PF01399 277 - 354 3.9e-18 PCI domain
RPN7_PSMD6_C PF21154 363 - 384 7.6e-13 26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AccI GTMKAC 1 cut(s) 560
AccII CGCG 1 cut(s) 1144
AccIII TCCGGA 1 cut(s) 1066
AclWI GGATC 4 cut(s) 214, 852, 1123, 1136
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 3 cut(s) 487, 568, 1078
AcuI CTGAAG 1 cut(s) 285
AcyI GRCGYC 1 cut(s) 143
AfaI GTAC 2 cut(s) 551, 794
AfeI AGCGCT 1 cut(s) 351
AfiI CCNNNNNNNGG 3 cut(s) 103, 109, 166
AgsI TTSAA 5 cut(s) 80, 497, 532, 772, 941
AjnI CCWGG 3 cut(s) 189, 222, 594
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AloI GAACNNNNNNTCC 2 cut(s) 398, 430
AluBI AGCT 8 cut(s) 40, 52, 232, 241, 299, 430, 841, 991
AluI AGCT 8 cut(s) 40, 52, 232, 241, 299, 430, 841, 991
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 2 cut(s) 11, 999
AlwI GGATC 4 cut(s) 214, 852, 1123, 1136
Aor13HI TCCGGA 1 cut(s) 1066
Aor51HI AGCGCT 1 cut(s) 351
AoxI GGCC 2 cut(s) 213, 306
ApeKI GCWGC 6 cut(s) 37, 424, 427, 581, 809, 1007
ApoI RAATTY 3 cut(s) 487, 568, 1078
Asp700I GAANNNNTTC 1 cut(s) 630
AspLEI GCGC 2 cut(s) 145, 352
AspS9I GGNCC 2 cut(s) 94, 187
AsuC2I CCSGG 2 cut(s) 71, 104
AsuHPI GGTGA 4 cut(s) 347, 518, 607, 748
AsuNHI GCTAGC 1 cut(s) 40
AvaII GGWCC 2 cut(s) 94, 187
BalI TGGCCA 1 cut(s) 308
BamHI GGATCC 1 cut(s) 1128
BanI GGYRCC 1 cut(s) 142
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 6 cut(s) 49, 411, 439, 568, 821, 1019
BccI CCATC 2 cut(s) 178, 397
BciT130I CCWGG 3 cut(s) 191, 224, 596
BcnI CCSGG 2 cut(s) 71, 104
BcoDI GTCTC 2 cut(s) 11, 999
BfaI CTAG 3 cut(s) 41, 161, 1052
BfmI CTRYAG 3 cut(s) 35, 425, 1157
BfoI RGCGCY 2 cut(s) 146, 353
BisI GCNGC 6 cut(s) 38, 425, 428, 582, 810, 1008
BlsI GCNGC 6 cut(s) 39, 426, 429, 583, 811, 1009
Bme1390I CCNGG 5 cut(s) 71, 104, 191, 224, 596
Bme18I GGWCC 2 cut(s) 94, 187
BmgT120I GGNCC 2 cut(s) 94, 187
BmiI GGNNCC 3 cut(s) 101, 144, 1130
BmrFI CCNGG 5 cut(s) 71, 104, 191, 224, 596
BmsI GCATC 4 cut(s) 250, 706, 865, 1060
BmtI GCTAGC 1 cut(s) 44
BpmI CTGGAG 3 cut(s) 200, 705, 1007
BpuEI CTTGAG 1 cut(s) 347
BpuMI CCSGG 2 cut(s) 71, 104
BsaHI GRCGYC 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 190
BsaWI WCCGGW 2 cut(s) 867, 1066
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 109, 166
Bse3DI GCAATG 2 cut(s) 951, 1002
BseAI TCCGGA 1 cut(s) 1066
BseBI CCWGG 3 cut(s) 191, 224, 596
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 4 cut(s) 324, 721, 856, 1075
BseLI CCNNNNNNNGG 3 cut(s) 103, 109, 166
BseMI GCAATG 2 cut(s) 951, 1002
BseMII CTCAG 2 cut(s) 35, 753
BseRI GAGGAG 2 cut(s) 122, 242
BseXI GCAGC 6 cut(s) 49, 411, 439, 568, 821, 1019
Bsh1236I CGCG 1 cut(s) 1144
BshFI GGCC 2 cut(s) 215, 308
BshNI GGYRCC 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 5 cut(s) 71, 97, 103, 868, 1067
BslFI GGGAC 2 cut(s) 298, 1124
BslI CCNNNNNNNGG 3 cut(s) 103, 109, 166
BsmAI GTCTC 2 cut(s) 11, 999
BsmFI GGGAC 2 cut(s) 298, 1124
BsnI GGCC 2 cut(s) 215, 308
Bsp1286I GDGCHC 1 cut(s) 234
Bsp13I TCCGGA 1 cut(s) 1066
Bsp143I GATC 5 cut(s) 219, 844, 982, 1128, 1153
BspANI GGCC 2 cut(s) 215, 308
BspCNI CTCAG 2 cut(s) 34, 754
BspEI TCCGGA 1 cut(s) 1066
BspFNI CGCG 1 cut(s) 1144
BspLI GGNNCC 3 cut(s) 101, 144, 1130
BspMAI CTGCAG 2 cut(s) 39, 429
BspOI GCTAGC 1 cut(s) 44
BspPI GGATC 4 cut(s) 214, 852, 1123, 1136
BspQI GCTCTTC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 142
BsrDI GCAATG 2 cut(s) 951, 1002
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 5 cut(s) 219, 844, 982, 1128, 1153
BssNI GRCGYC 1 cut(s) 143
Bst2UI CCWGG 3 cut(s) 191, 224, 596
Bst4CI ACNGT 6 cut(s) 124, 385, 661, 736, 895, 970
Bst6I CTCTTC 3 cut(s) 9, 59, 492
BstACI GRCGYC 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 815
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 3 cut(s) 21, 465, 762
BstF5I GGATG 4 cut(s) 324, 721, 856, 1075
BstFNI CGCG 1 cut(s) 1144
BstH2I RGCGCY 2 cut(s) 146, 353
BstHHI GCGC 2 cut(s) 145, 352
BstKTI GATC 5 cut(s) 222, 847, 985, 1131, 1156
BstMAI GTCTC 2 cut(s) 11, 999
BstMBI GATC 5 cut(s) 219, 844, 982, 1128, 1153
BstMWI GCNNNNNNNGC 5 cut(s) 238, 305, 552, 815, 838
BstNI CCWGG 3 cut(s) 191, 224, 596
BstNSI RCATGY 1 cut(s) 559
BstSCI CCNGG 5 cut(s) 69, 102, 189, 222, 594
BstSFI CTRYAG 3 cut(s) 35, 425, 1157
BstUI CGCG 1 cut(s) 1144
BstV1I GCAGC 6 cut(s) 49, 411, 439, 568, 821, 1019
BstX2I RGATCY 2 cut(s) 219, 1128
BstYI RGATCY 2 cut(s) 219, 1128
BsuRI GGCC 2 cut(s) 215, 308
BtsCI GGATG 4 cut(s) 324, 721, 856, 1075
BtsI GCAGTG 1 cut(s) 1021
BtsIMutI CAGTG 2 cut(s) 975, 1021
Cac8I GCNNGC 1 cut(s) 42
CfoI GCGC 2 cut(s) 145, 352
Cfr13I GGNCC 2 cut(s) 94, 187
Csp6I GTAC 2 cut(s) 550, 793
CviAII CATG 4 cut(s) 208, 445, 556, 877
CviQI GTAC 2 cut(s) 550, 793
DdeI CTNAG 3 cut(s) 21, 465, 762
DinI GGCGCC 1 cut(s) 144
DpnI GATC 5 cut(s) 221, 846, 984, 1130, 1155
DpnII GATC 5 cut(s) 219, 844, 982, 1128, 1153
DraI TTTAAA 1 cut(s) 699
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 3 cut(s) 9, 59, 492
EarI CTCTTC 3 cut(s) 9, 59, 492
Ecl136II GAGCTC 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 234
Eco47I GGWCC 2 cut(s) 94, 187
Eco47III AGCGCT 1 cut(s) 351
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 285
EcoICRI GAGCTC 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 1078
EcoRII CCWGG 3 cut(s) 189, 222, 594
EcoT38I GRGCYC 1 cut(s) 234
EgeI GGCGCC 1 cut(s) 144
EheI GGCGCC 1 cut(s) 144
FaeI CATG 4 cut(s) 211, 448, 559, 880
FalI AAGNNNNNCTT 4 cut(s) 392, 424, 512, 544
FaqI GGGAC 2 cut(s) 298, 1124
FatI CATG 4 cut(s) 207, 444, 555, 876
FblI GTMKAC 1 cut(s) 560
Fnu4HI GCNGC 6 cut(s) 38, 425, 428, 582, 810, 1008
FokI GGATG 4 cut(s) 311, 728, 843, 1082
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 6 cut(s) 38, 425, 428, 582, 810, 1008
FspBI CTAG 3 cut(s) 41, 161, 1052
GlaI GCGC 2 cut(s) 144, 351
GluI GCNGC 6 cut(s) 38, 425, 428, 582, 810, 1008
GsuI CTGGAG 3 cut(s) 200, 705, 1007
HaeII RGCGCY 2 cut(s) 146, 353
HaeIII GGCC 2 cut(s) 215, 308
HapII CCGG 5 cut(s) 71, 97, 103, 868, 1067
HhaI GCGC 2 cut(s) 145, 352
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 4 cut(s) 211, 448, 559, 880
Hin6I GCGC 2 cut(s) 143, 350
HinP1I GCGC 2 cut(s) 143, 350
HincII GTYRAC 1 cut(s) 561
HindII GTYRAC 1 cut(s) 561
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 7 cut(s) 19, 170, 203, 523, 562, 599, 917
HpaII CCGG 5 cut(s) 71, 97, 103, 868, 1067
HphI GGTGA 4 cut(s) 347, 518, 607, 748
Hpy166II GTNNAC 1 cut(s) 561
Hpy188I TCNGA 5 cut(s) 169, 293, 763, 825, 890
Hpy8I GTNNAC 1 cut(s) 561
HpyAV CCTTC 8 cut(s) 68, 85, 205, 526, 536, 571, 622, 700
HpyCH4III ACNGT 6 cut(s) 124, 385, 661, 736, 895, 970
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 7 cut(s) 37, 389, 427, 555, 856, 1007, 1026
HpyF10VI GCNNNNNNNGC 5 cut(s) 238, 305, 552, 815, 838
HpyF3I CTNAG 3 cut(s) 21, 465, 762
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 4 cut(s) 211, 448, 559, 880
HspAI GCGC 2 cut(s) 143, 350
KasI GGCGCC 1 cut(s) 142
Kpn2I TCCGGA 1 cut(s) 1066
Kzo9I GATC 5 cut(s) 219, 844, 982, 1128, 1153
LguI GCTCTTC 1 cut(s) 59
LmnI GCTCC 4 cut(s) 105, 229, 724, 988
Lsp1109I GCAGC 6 cut(s) 49, 411, 439, 568, 821, 1019
LweI GCATC 4 cut(s) 250, 706, 865, 1060
MaeI CTAG 3 cut(s) 41, 161, 1052
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 4 cut(s) 335, 367, 931, 964
MalI GATC 5 cut(s) 221, 846, 984, 1130, 1155
MboI GATC 5 cut(s) 219, 844, 982, 1128, 1153
MboII GAAGA 7 cut(s) 26, 46, 278, 313, 509, 532, 637
MflI RGATCY 2 cut(s) 219, 1128
MhlI GDGCHC 1 cut(s) 234
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 4 cut(s) 487, 568, 908, 1078
MluNI TGGCCA 1 cut(s) 308
Mly113I GGCGCC 1 cut(s) 143
MlyI GAGTC 5 cut(s) 13, 179, 197, 556, 926
MnlI CCTC 8 cut(s) 39, 100, 103, 220, 467, 493, 497, 873
Mox20I TGGCCA 1 cut(s) 308
MroI TCCGGA 1 cut(s) 1066
MroXI GAANNNNTTC 1 cut(s) 630
MscI TGGCCA 1 cut(s) 308
MseI TTAA 2 cut(s) 573, 698
Msp20I TGGCCA 1 cut(s) 308
MspI CCGG 5 cut(s) 71, 97, 103, 868, 1067
MspR9I CCNGG 5 cut(s) 71, 104, 191, 224, 596
MvaI CCWGG 3 cut(s) 191, 224, 596
MvnI CGCG 1 cut(s) 1144
MwoI GCNNNNNNNGC 5 cut(s) 238, 305, 552, 815, 838
NarI GGCGCC 1 cut(s) 143
NciI CCSGG 2 cut(s) 71, 104
NdeII GATC 5 cut(s) 219, 844, 982, 1128, 1153
NheI GCTAGC 1 cut(s) 40
NlaIII CATG 4 cut(s) 211, 448, 559, 880
NlaIV GGNNCC 3 cut(s) 101, 144, 1130
NmuCI GTSAC 3 cut(s) 335, 931, 964
NspI RCATGY 1 cut(s) 559
PciSI GCTCTTC 1 cut(s) 59
PdmI GAANNNNTTC 1 cut(s) 630
PfeI GAWTC 2 cut(s) 523, 599
PfoI TCCNGGA 3 cut(s) 102, 222, 594
PkrI GCNGC 6 cut(s) 39, 426, 429, 583, 811, 1009
PleI GAGTC 5 cut(s) 13, 178, 197, 556, 925
PluTI GGCGCC 1 cut(s) 146
PpsI GAGTC 5 cut(s) 13, 178, 197, 556, 925
Psp124BI GAGCTC 1 cut(s) 234
Psp6I CCWGG 3 cut(s) 189, 222, 594
PspGI CCWGG 3 cut(s) 189, 222, 594
PspN4I GGNNCC 3 cut(s) 101, 144, 1130
PspPI GGNCC 2 cut(s) 94, 187
PstI CTGCAG 2 cut(s) 39, 429
PsuI RGATCY 2 cut(s) 219, 1128
RsaI GTAC 2 cut(s) 551, 794
RsaNI GTAC 2 cut(s) 550, 793
SacI GAGCTC 1 cut(s) 234
SalI GTCGAC 1 cut(s) 559
SapI GCTCTTC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 573, 698
SatI GCNGC 6 cut(s) 38, 425, 428, 582, 810, 1008
Sau3AI GATC 5 cut(s) 219, 844, 982, 1128, 1153
Sau96I GGNCC 2 cut(s) 94, 187
SchI GAGTC 5 cut(s) 13, 179, 197, 556, 926
ScrFI CCNGG 5 cut(s) 71, 104, 191, 224, 596
SduI GDGCHC 1 cut(s) 234
SfaNI GCATC 4 cut(s) 250, 706, 865, 1060
SfcI CTRYAG 3 cut(s) 35, 425, 1157
SfoI GGCGCC 1 cut(s) 144
SinI GGWCC 2 cut(s) 94, 187
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 4 cut(s) 487, 568, 908, 1078
SspDI GGCGCC 1 cut(s) 142
SspI AATATT 1 cut(s) 630
SspMI CTAG 3 cut(s) 41, 161, 1052
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 5 cut(s) 69, 102, 189, 222, 594
TaaI ACNGT 6 cut(s) 124, 385, 661, 736, 895, 970
TaiI ACGT 1 cut(s) 78
TaqI TCGA 3 cut(s) 87, 560, 565
TasI AATT 4 cut(s) 487, 568, 908, 1078
TatI WGTACW 2 cut(s) 549, 792
TfiI GAWTC 2 cut(s) 523, 599
Tru1I TTAA 2 cut(s) 573, 698
Tru9I TTAA 2 cut(s) 573, 698
TscAI CASTG 2 cut(s) 975, 1028
TseFI GTSAC 3 cut(s) 335, 931, 964
TseI GCWGC 6 cut(s) 37, 424, 427, 581, 809, 1007
Tsp45I GTSAC 3 cut(s) 335, 931, 964
TspDTI ATGAA 8 cut(s) 168, 224, 261, 313, 555, 637, 967, 991
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 2 cut(s) 975, 1028
VpaK11BI GGWCC 2 cut(s) 94, 187
XapI RAATTY 3 cut(s) 487, 568, 1078
XbaI TCTAGA 1 cut(s) 1051
XceI RCATGY 1 cut(s) 559
XmiI GTMKAC 1 cut(s) 560
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 3 cut(s) 41, 161, 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.