Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015000.1

Orthogroup ID

OG0005007

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2301

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015000.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 706 bp

atggaaggtcaagaagagactcagcaacctcatctgcagctagcgaacaagctcttccttctgtcgcacccggacgttcaagacatcgagaaggtccggctccgggaagaggttttcgccaccgtcaaagccgatgatatggcgcctttgtatgaaaccctagtttcggaatcggtgctggagatggaccagggcgttctggactccatgaaggccaagatccaggaggagctcaagaagcttgatgaaaagattgccgatgctgaagaaaacctgggagaaagtgaagtcagagaagctcatttggccaagtccctgttcttcatccgtataggtgacaaggaaaaagcgctggaacaactcaaggtaacagaaagcaagacagttgcagtagggcaaaagatggacttggtgttctatacgcttcagcttggtttcttttacatggattttgacctcatttctaagagcattgagaaagcgaaaaatttatttgaagagggaggtgattgggaaaggaagaatcgcttgaaggtatatgaaggcttgtactgcatgtccactcgaaattttaagaaggcagccgatttgttcctggattccatttctaccttcaccacttacgaaatatttccctatgacatcttcatattttataccgtcctgacaagcattatatctttggacagagtttctttaaaacaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03050 ko04066 ko05010 ko05169 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03050 map04066 map05010 map05169

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

235

Amino Acids

27.17

Weight (kDa)

4.83

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24820 AT4G24820
fragaria_vesca	FvH4_3g25540
malus_domestica	MD06G1151500.v1.1 MD06G1156100.v1.1 MD14G1163300.v1.1
prunus_persica	Prupe.5G156700_v2.0.a1
pyrus_communis	pycom06g13920 pycom14g13590
rosa_chinensis	RchiOBHm_Chr5g0017921 RchiOBHm_Chr5g0044171 RchiOBHm_Chr5g0065961 RchiOBHm_Chr7g0191031 RchiOBHm_Chr7g0191061
rosa_laevigata	RLG00000004478
rosa_multiflora	Rmu_sc0000184.1_g000009 Rmu_sc0002080.1_g000014 Rmu_sc0005637.1_g000001 Rmu_sc0015000.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036890 Rroxscaffold_3G00264070
rosa_rugosa	Rorug06G0508300
rosa_samantha	Rh7AG115600 Rh7BG117900 Rh7BG118300 Rh7CG120800 Rh7CG186900 Rh7DG119300
rosa_wichuraiana	Rw2G007700 Rw7G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	2 cut(s)	487, 568
AcuI	CTGAAG	2 cut(s)	285, 410
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	1 cut(s)	551
AfeI	AGCGCT	1 cut(s)	351
AfiI	CCNNNNNNNGG	3 cut(s)	103, 109, 166
AgsI	TTSAA	3 cut(s)	80, 497, 532
AjnI	CCWGG	4 cut(s)	189, 222, 273, 594
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AloI	GAACNNNNNNTCC	2 cut(s)	398, 430
AluBI	AGCT	6 cut(s)	40, 52, 232, 241, 299, 430
AluI	AGCT	6 cut(s)	40, 52, 232, 241, 299, 430
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	214
Aor51HI	AGCGCT	1 cut(s)	351
AoxI	GGCC	2 cut(s)	213, 306
ApeKI	GCWGC	2 cut(s)	37, 581
ApoI	RAATTY	2 cut(s)	487, 568
Asp700I	GAANNNNTTC	1 cut(s)	630
AspLEI	GCGC	2 cut(s)	145, 352
AspS9I	GGNCC	2 cut(s)	94, 187
AsuC2I	CCSGG	2 cut(s)	71, 104
AsuHPI	GGTGA	3 cut(s)	347, 518, 607
AsuNHI	GCTAGC	1 cut(s)	40
AvaII	GGWCC	2 cut(s)	94, 187
BalI	TGGCCA	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	2 cut(s)	49, 593
BccI	CCATC	2 cut(s)	178, 397
BciT130I	CCWGG	4 cut(s)	191, 224, 275, 596
BcnI	CCSGG	2 cut(s)	71, 104
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	2 cut(s)	41, 161
BfmI	CTRYAG	1 cut(s)	35
BfoI	RGCGCY	2 cut(s)	146, 353
BisI	GCNGC	2 cut(s)	38, 582
BlsI	GCNGC	2 cut(s)	39, 583
Bme1390I	CCNGG	6 cut(s)	71, 104, 191, 224, 275, 596
Bme18I	GGWCC	2 cut(s)	94, 187
BmgT120I	GGNCC	2 cut(s)	94, 187
BmiI	GGNNCC	2 cut(s)	101, 144
BmrFI	CCNGG	6 cut(s)	71, 104, 191, 224, 275, 596
BmsI	GCATC	1 cut(s)	250
BmtI	GCTAGC	1 cut(s)	44
BpmI	CTGGAG	1 cut(s)	200
BpuEI	CTTGAG	2 cut(s)	218, 347
BpuMI	CCSGG	2 cut(s)	71, 104
BsaHI	GRCGYC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	190, 274
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 109, 166
BseBI	CCWGG	4 cut(s)	191, 224, 275, 596
BseDI	CCNNGG	2 cut(s)	190, 274
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	103, 109, 166
BseMII	CTCAG	1 cut(s)	35
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	2 cut(s)	49, 593
BshFI	GGCC	2 cut(s)	215, 308
BshNI	GGYRCC	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	3 cut(s)	71, 97, 103
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	3 cut(s)	103, 109, 166
BsmAI	GTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	2 cut(s)	215, 308
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	1 cut(s)	219
BspANI	GGCC	2 cut(s)	215, 308
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	2 cut(s)	101, 144
BspMAI	CTGCAG	1 cut(s)	39
BspOI	GCTAGC	1 cut(s)	44
BspPI	GGATC	1 cut(s)	214
BspQI	GCTCTTC	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	142
BssECI	CCNNGG	2 cut(s)	190, 274
BssMI	GATC	1 cut(s)	219
BssNI	GRCGYC	1 cut(s)	143
Bst2UI	CCWGG	4 cut(s)	191, 224, 275, 596
Bst4CI	ACNGT	3 cut(s)	124, 385, 661
Bst6I	CTCTTC	4 cut(s)	9, 59, 102, 492
BstACI	GRCGYC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	21, 465
BstF5I	GGATG	1 cut(s)	324
BstH2I	RGCGCY	2 cut(s)	146, 353
BstHHI	GCGC	2 cut(s)	145, 352
BstKTI	GATC	1 cut(s)	222
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	219
BstMWI	GCNNNNNNNGC	3 cut(s)	238, 305, 552
BstNI	CCWGG	4 cut(s)	191, 224, 275, 596
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	6 cut(s)	69, 102, 189, 222, 273, 594
BstSFI	CTRYAG	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	49, 593
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	215, 308
BtsCI	GGATG	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	42
CfoI	GCGC	2 cut(s)	145, 352
Cfr13I	GGNCC	2 cut(s)	94, 187
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	3 cut(s)	208, 445, 556
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	2 cut(s)	21, 465
DinI	GGCGCC	1 cut(s)	144
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
DraI	TTTAAA	1 cut(s)	699
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	4 cut(s)	9, 59, 102, 492
EarI	CTCTTC	4 cut(s)	9, 59, 102, 492
Ecl136II	GAGCTC	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	2 cut(s)	94, 187
Eco47III	AGCGCT	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	285, 410
EcoICRI	GAGCTC	1 cut(s)	232
EcoRII	CCWGG	4 cut(s)	189, 222, 273, 594
EcoT38I	GRGCYC	1 cut(s)	234
EgeI	GGCGCC	1 cut(s)	144
EheI	GGCGCC	1 cut(s)	144
FaeI	CATG	3 cut(s)	211, 448, 559
FalI	AAGNNNNNCTT	4 cut(s)	392, 424, 512, 544
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	3 cut(s)	207, 444, 555
Fnu4HI	GCNGC	2 cut(s)	38, 582
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	2 cut(s)	38, 582
FspBI	CTAG	2 cut(s)	41, 161
GlaI	GCGC	2 cut(s)	144, 351
GluI	GCNGC	2 cut(s)	38, 582
GsuI	CTGGAG	1 cut(s)	200
HaeII	RGCGCY	2 cut(s)	146, 353
HaeIII	GGCC	2 cut(s)	215, 308
HapII	CCGG	3 cut(s)	71, 97, 103
HhaI	GCGC	2 cut(s)	145, 352
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	3 cut(s)	211, 448, 559
Hin6I	GCGC	2 cut(s)	143, 350
HinP1I	GCGC	2 cut(s)	143, 350
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	5 cut(s)	19, 170, 203, 523, 599
HpaII	CCGG	3 cut(s)	71, 97, 103
HphI	GGTGA	3 cut(s)	347, 518, 607
Hpy166II	GTNNAC	1 cut(s)	561
Hpy188I	TCNGA	2 cut(s)	169, 293
Hpy188III	TCNNGA	6 cut(s)	11, 80, 88, 200, 235, 664
Hpy8I	GTNNAC	1 cut(s)	561
HpyAV	CCTTC	7 cut(s)	68, 85, 205, 526, 536, 571, 622
HpyCH4III	ACNGT	3 cut(s)	124, 385, 661
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	3 cut(s)	37, 389, 555
HpyF10VI	GCNNNNNNNGC	3 cut(s)	238, 305, 552
HpyF3I	CTNAG	2 cut(s)	21, 465
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	3 cut(s)	211, 448, 559
HspAI	GCGC	2 cut(s)	143, 350
KasI	GGCGCC	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	219
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	2 cut(s)	105, 229
Lsp1109I	GCAGC	2 cut(s)	49, 593
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	2 cut(s)	41, 161
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	335, 367
MalI	GATC	1 cut(s)	221
MboI	GATC	1 cut(s)	219
MboII	GAAGA	8 cut(s)	26, 46, 119, 278, 313, 509, 532, 637
MflI	RGATCY	1 cut(s)	219
MhlI	GDGCHC	1 cut(s)	234
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	2 cut(s)	487, 568
MluNI	TGGCCA	1 cut(s)	308
Mly113I	GGCGCC	1 cut(s)	143
MlyI	GAGTC	2 cut(s)	13, 197
MnlI	CCTC	6 cut(s)	39, 103, 220, 467, 493, 497
Mox20I	TGGCCA	1 cut(s)	308
MroXI	GAANNNNTTC	1 cut(s)	630
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	2 cut(s)	573, 698
Msp20I	TGGCCA	1 cut(s)	308
MspI	CCGG	3 cut(s)	71, 97, 103
MspR9I	CCNGG	6 cut(s)	71, 104, 191, 224, 275, 596
MvaI	CCWGG	4 cut(s)	191, 224, 275, 596
MwoI	GCNNNNNNNGC	3 cut(s)	238, 305, 552
NarI	GGCGCC	1 cut(s)	143
NciI	CCSGG	2 cut(s)	71, 104
NdeII	GATC	1 cut(s)	219
NheI	GCTAGC	1 cut(s)	40
NlaIII	CATG	3 cut(s)	211, 448, 559
NlaIV	GGNNCC	2 cut(s)	101, 144
NmuCI	GTSAC	1 cut(s)	335
NspI	RCATGY	1 cut(s)	559
PciSI	GCTCTTC	1 cut(s)	59
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	3 cut(s)	170, 523, 599
PfoI	TCCNGGA	3 cut(s)	102, 222, 594
PkrI	GCNGC	2 cut(s)	39, 583
PleI	GAGTC	2 cut(s)	13, 197
PluTI	GGCGCC	1 cut(s)	146
PpsI	GAGTC	2 cut(s)	13, 197
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	4 cut(s)	189, 222, 273, 594
PspGI	CCWGG	4 cut(s)	189, 222, 273, 594
PspN4I	GGNNCC	2 cut(s)	101, 144
PspPI	GGNCC	2 cut(s)	94, 187
PstI	CTGCAG	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	219
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
SacI	GAGCTC	1 cut(s)	234
SapI	GCTCTTC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	573, 698
SatI	GCNGC	2 cut(s)	38, 582
Sau3AI	GATC	1 cut(s)	219
Sau96I	GGNCC	2 cut(s)	94, 187
SchI	GAGTC	2 cut(s)	13, 197
ScrFI	CCNGG	6 cut(s)	71, 104, 191, 224, 275, 596
SduI	GDGCHC	1 cut(s)	234
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	35
SfoI	GGCGCC	1 cut(s)	144
SinI	GGWCC	2 cut(s)	94, 187
SmlI	CTYRAG	2 cut(s)	233, 362
SmoI	CTYRAG	2 cut(s)	233, 362
Sse9I	AATT	2 cut(s)	487, 568
SspDI	GGCGCC	1 cut(s)	142
SspI	AATATT	1 cut(s)	630
SspMI	CTAG	2 cut(s)	41, 161
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	6 cut(s)	69, 102, 189, 222, 273, 594
TaaI	ACNGT	3 cut(s)	124, 385, 661
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	87, 565
TasI	AATT	2 cut(s)	487, 568
TatI	WGTACW	1 cut(s)	549
TfiI	GAWTC	3 cut(s)	170, 523, 599
Tru1I	TTAA	2 cut(s)	573, 698
Tru9I	TTAA	2 cut(s)	573, 698
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	2 cut(s)	37, 581
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	6 cut(s)	168, 224, 261, 313, 555, 637
TspGWI	ACGGA	1 cut(s)	317
VpaK11BI	GGWCC	2 cut(s)	94, 187
XapI	RAATTY	2 cut(s)	487, 568
XceI	RCATGY	1 cut(s)	559
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	2 cut(s)	41, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.