26S proteasome non-ATPase regulatory subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G24820 AT4G24820 |
| fragaria_vesca | FvH4_3g25540 |
| malus_domestica | MD06G1151500.v1.1 MD06G1156100.v1.1 MD14G1163300.v1.1 |
| prunus_persica | Prupe.5G156700_v2.0.a1 |
| pyrus_communis | pycom06g13920 pycom14g13590 |
| rosa_chinensis | RchiOBHm_Chr5g0017921 RchiOBHm_Chr5g0044171 RchiOBHm_Chr5g0065961 RchiOBHm_Chr7g0191031 RchiOBHm_Chr7g0191061 |
| rosa_laevigata | RLG00000004478 |
| rosa_multiflora | Rmu_sc0000184.1_g000009 Rmu_sc0002080.1_g000014 Rmu_sc0005637.1_g000001 Rmu_sc0015000.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00036890 Rroxscaffold_3G00264070 |
| rosa_rugosa | Rorug06G0508300 |
| rosa_samantha | Rh7AG115600 Rh7BG117900 Rh7BG118300 Rh7CG120800 Rh7CG186900 Rh7DG119300 |
| rosa_wichuraiana | Rw2G007700 Rw7G010050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 142 |
| AccII | CGCG | 1 cut(s) | 1144 |
| AccIII | TCCGGA | 1 cut(s) | 1066 |
| AclWI | GGATC | 4 cut(s) | 214, 852, 1123, 1136 |
| AcoI | YGGCCR | 1 cut(s) | 306 |
| AcsI | RAATTY | 3 cut(s) | 487, 568, 1078 |
| AcuI | CTGAAG | 1 cut(s) | 285 |
| AcyI | GRCGYC | 1 cut(s) | 143 |
| AfaI | GTAC | 3 cut(s) | 551, 755, 794 |
| AfeI | AGCGCT | 1 cut(s) | 351 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 103, 109, 166 |
| AgsI | TTSAA | 5 cut(s) | 80, 497, 532, 772, 941 |
| AjnI | CCWGG | 4 cut(s) | 189, 222, 273, 594 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 302, 334 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 398, 430 |
| AluBI | AGCT | 8 cut(s) | 40, 52, 232, 241, 299, 430, 841, 991 |
| AluI | AGCT | 8 cut(s) | 40, 52, 232, 241, 299, 430, 841, 991 |
| Alw21I | GWGCWC | 1 cut(s) | 234 |
| Alw26I | GTCTC | 2 cut(s) | 11, 999 |
| AlwI | GGATC | 4 cut(s) | 214, 852, 1123, 1136 |
| Aor13HI | TCCGGA | 1 cut(s) | 1066 |
| Aor51HI | AGCGCT | 1 cut(s) | 351 |
| AoxI | GGCC | 2 cut(s) | 213, 306 |
| ApeKI | GCWGC | 6 cut(s) | 37, 424, 427, 581, 809, 1007 |
| ApoI | RAATTY | 3 cut(s) | 487, 568, 1078 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 630 |
| AspLEI | GCGC | 2 cut(s) | 145, 352 |
| AspS9I | GGNCC | 2 cut(s) | 94, 187 |
| AsuC2I | CCSGG | 2 cut(s) | 71, 104 |
| AsuHPI | GGTGA | 3 cut(s) | 347, 518, 607 |
| AsuNHI | GCTAGC | 1 cut(s) | 40 |
| AvaII | GGWCC | 2 cut(s) | 94, 187 |
| BalI | TGGCCA | 1 cut(s) | 308 |
| BamHI | GGATCC | 1 cut(s) | 1128 |
| BanI | GGYRCC | 1 cut(s) | 142 |
| BanII | GRGCYC | 1 cut(s) | 234 |
| Bbv12I | GWGCWC | 1 cut(s) | 234 |
| BbvI | GCAGC | 6 cut(s) | 49, 411, 439, 593, 821, 1019 |
| BccI | CCATC | 2 cut(s) | 178, 397 |
| BciT130I | CCWGG | 4 cut(s) | 191, 224, 275, 596 |
| BcnI | CCSGG | 2 cut(s) | 71, 104 |
| BcoDI | GTCTC | 2 cut(s) | 11, 999 |
| BfaI | CTAG | 3 cut(s) | 41, 161, 1052 |
| BfmI | CTRYAG | 3 cut(s) | 35, 425, 1157 |
| BfoI | RGCGCY | 2 cut(s) | 146, 353 |
| BisI | GCNGC | 6 cut(s) | 38, 425, 428, 582, 810, 1008 |
| BlsI | GCNGC | 6 cut(s) | 39, 426, 429, 583, 811, 1009 |
| Bme1390I | CCNGG | 6 cut(s) | 71, 104, 191, 224, 275, 596 |
| Bme18I | GGWCC | 2 cut(s) | 94, 187 |
| BmgT120I | GGNCC | 2 cut(s) | 94, 187 |
| BmiI | GGNNCC | 3 cut(s) | 101, 144, 1130 |
| BmrFI | CCNGG | 6 cut(s) | 71, 104, 191, 224, 275, 596 |
| BmsI | GCATC | 4 cut(s) | 250, 706, 865, 1060 |
| BmtI | GCTAGC | 1 cut(s) | 44 |
| BpmI | CTGGAG | 3 cut(s) | 200, 705, 1007 |
| BpuEI | CTTGAG | 2 cut(s) | 218, 347 |
| BpuMI | CCSGG | 2 cut(s) | 71, 104 |
| BsaHI | GRCGYC | 1 cut(s) | 143 |
| BsaJI | CCNNGG | 2 cut(s) | 190, 274 |
| BsaWI | WCCGGW | 2 cut(s) | 867, 1066 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 103, 109, 166 |
| Bse3DI | GCAATG | 2 cut(s) | 951, 1002 |
| BseAI | TCCGGA | 1 cut(s) | 1066 |
| BseBI | CCWGG | 4 cut(s) | 191, 224, 275, 596 |
| BseDI | CCNNGG | 2 cut(s) | 190, 274 |
| BseGI | GGATG | 4 cut(s) | 324, 721, 856, 1075 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 103, 109, 166 |
| BseMI | GCAATG | 2 cut(s) | 951, 1002 |
| BseMII | CTCAG | 2 cut(s) | 35, 753 |
| BseRI | GAGGAG | 1 cut(s) | 242 |
| BseXI | GCAGC | 6 cut(s) | 49, 411, 439, 593, 821, 1019 |
| Bsh1236I | CGCG | 1 cut(s) | 1144 |
| BshFI | GGCC | 2 cut(s) | 215, 308 |
| BshNI | GGYRCC | 1 cut(s) | 142 |
| BsiHKAI | GWGCWC | 1 cut(s) | 234 |
| BsiSI | CCGG | 5 cut(s) | 71, 97, 103, 868, 1067 |
| BslFI | GGGAC | 2 cut(s) | 298, 1124 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 103, 109, 166 |
| BsmAI | GTCTC | 2 cut(s) | 11, 999 |
| BsmFI | GGGAC | 2 cut(s) | 298, 1124 |
| BsnI | GGCC | 2 cut(s) | 215, 308 |
| Bsp1286I | GDGCHC | 1 cut(s) | 234 |
| Bsp13I | TCCGGA | 1 cut(s) | 1066 |
| Bsp143I | GATC | 5 cut(s) | 219, 844, 982, 1128, 1153 |
| BspANI | GGCC | 2 cut(s) | 215, 308 |
| BspCNI | CTCAG | 2 cut(s) | 34, 754 |
| BspEI | TCCGGA | 1 cut(s) | 1066 |
| BspFNI | CGCG | 1 cut(s) | 1144 |
| BspLI | GGNNCC | 3 cut(s) | 101, 144, 1130 |
| BspMAI | CTGCAG | 2 cut(s) | 39, 429 |
| BspOI | GCTAGC | 1 cut(s) | 44 |
| BspPI | GGATC | 4 cut(s) | 214, 852, 1123, 1136 |
| BspQI | GCTCTTC | 1 cut(s) | 59 |
| BspT107I | GGYRCC | 1 cut(s) | 142 |
| BsrDI | GCAATG | 2 cut(s) | 951, 1002 |
| BssECI | CCNNGG | 2 cut(s) | 190, 274 |
| BssMI | GATC | 5 cut(s) | 219, 844, 982, 1128, 1153 |
| BssNI | GRCGYC | 1 cut(s) | 143 |
| Bst2UI | CCWGG | 4 cut(s) | 191, 224, 275, 596 |
| Bst4CI | ACNGT | 6 cut(s) | 124, 385, 661, 736, 895, 970 |
| Bst6I | CTCTTC | 4 cut(s) | 9, 59, 102, 492 |
| BstACI | GRCGYC | 1 cut(s) | 143 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 815 |
| BstC8I | GCNNGC | 1 cut(s) | 42 |
| BstDEI | CTNAG | 3 cut(s) | 21, 465, 762 |
| BstF5I | GGATG | 4 cut(s) | 324, 721, 856, 1075 |
| BstFNI | CGCG | 1 cut(s) | 1144 |
| BstH2I | RGCGCY | 2 cut(s) | 146, 353 |
| BstHHI | GCGC | 2 cut(s) | 145, 352 |
| BstKTI | GATC | 5 cut(s) | 222, 847, 985, 1131, 1156 |
| BstMAI | GTCTC | 2 cut(s) | 11, 999 |
| BstMBI | GATC | 5 cut(s) | 219, 844, 982, 1128, 1153 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 238, 305, 552, 815, 838 |
| BstNI | CCWGG | 4 cut(s) | 191, 224, 275, 596 |
| BstNSI | RCATGY | 1 cut(s) | 559 |
| BstSCI | CCNGG | 6 cut(s) | 69, 102, 189, 222, 273, 594 |
| BstSFI | CTRYAG | 3 cut(s) | 35, 425, 1157 |
| BstUI | CGCG | 1 cut(s) | 1144 |
| BstV1I | GCAGC | 6 cut(s) | 49, 411, 439, 593, 821, 1019 |
| BstX2I | RGATCY | 2 cut(s) | 219, 1128 |
| BstYI | RGATCY | 2 cut(s) | 219, 1128 |
| BsuRI | GGCC | 2 cut(s) | 215, 308 |
| BtsCI | GGATG | 4 cut(s) | 324, 721, 856, 1075 |
| BtsI | GCAGTG | 1 cut(s) | 1021 |
| BtsIMutI | CAGTG | 2 cut(s) | 975, 1021 |
| Cac8I | GCNNGC | 1 cut(s) | 42 |
| CfoI | GCGC | 2 cut(s) | 145, 352 |
| Cfr13I | GGNCC | 2 cut(s) | 94, 187 |
| Csp6I | GTAC | 3 cut(s) | 550, 754, 793 |
| CviAII | CATG | 4 cut(s) | 208, 445, 556, 877 |
| CviQI | GTAC | 3 cut(s) | 550, 754, 793 |
| DdeI | CTNAG | 3 cut(s) | 21, 465, 762 |
| DinI | GGCGCC | 1 cut(s) | 144 |
| DpnI | GATC | 5 cut(s) | 221, 846, 984, 1130, 1155 |
| DpnII | GATC | 5 cut(s) | 219, 844, 982, 1128, 1153 |
| EaeI | YGGCCR | 1 cut(s) | 306 |
| Eam1104I | CTCTTC | 4 cut(s) | 9, 59, 102, 492 |
| EarI | CTCTTC | 4 cut(s) | 9, 59, 102, 492 |
| Ecl136II | GAGCTC | 1 cut(s) | 232 |
| Eco24I | GRGCYC | 1 cut(s) | 234 |
| Eco47I | GGWCC | 2 cut(s) | 94, 187 |
| Eco47III | AGCGCT | 1 cut(s) | 351 |
| Eco53kI | GAGCTC | 1 cut(s) | 232 |
| Eco57I | CTGAAG | 1 cut(s) | 285 |
| EcoICRI | GAGCTC | 1 cut(s) | 232 |
| EcoRI | GAATTC | 1 cut(s) | 1078 |
| EcoRII | CCWGG | 4 cut(s) | 189, 222, 273, 594 |
| EcoT38I | GRGCYC | 1 cut(s) | 234 |
| EgeI | GGCGCC | 1 cut(s) | 144 |
| EheI | GGCGCC | 1 cut(s) | 144 |
| FaeI | CATG | 4 cut(s) | 211, 448, 559, 880 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 392, 424, 788, 820 |
| FaqI | GGGAC | 2 cut(s) | 298, 1124 |
| FatI | CATG | 4 cut(s) | 207, 444, 555, 876 |
| Fnu4HI | GCNGC | 6 cut(s) | 38, 425, 428, 582, 810, 1008 |
| FokI | GGATG | 4 cut(s) | 311, 728, 843, 1082 |
| FriOI | GRGCYC | 1 cut(s) | 234 |
| Fsp4HI | GCNGC | 6 cut(s) | 38, 425, 428, 582, 810, 1008 |
| FspBI | CTAG | 3 cut(s) | 41, 161, 1052 |
| GlaI | GCGC | 2 cut(s) | 144, 351 |
| GluI | GCNGC | 6 cut(s) | 38, 425, 428, 582, 810, 1008 |
| GsuI | CTGGAG | 3 cut(s) | 200, 705, 1007 |
| HaeII | RGCGCY | 2 cut(s) | 146, 353 |
| HaeIII | GGCC | 2 cut(s) | 215, 308 |
| HapII | CCGG | 5 cut(s) | 71, 97, 103, 868, 1067 |
| HhaI | GCGC | 2 cut(s) | 145, 352 |
| Hin1I | GRCGYC | 1 cut(s) | 143 |
| Hin1II | CATG | 4 cut(s) | 211, 448, 559, 880 |
| Hin6I | GCGC | 2 cut(s) | 143, 350 |
| HinP1I | GCGC | 2 cut(s) | 143, 350 |
| HindIII | AAGCTT | 1 cut(s) | 239 |
| HinfI | GANTC | 6 cut(s) | 19, 170, 203, 523, 599, 917 |
| HpaII | CCGG | 5 cut(s) | 71, 97, 103, 868, 1067 |
| HphI | GGTGA | 3 cut(s) | 347, 518, 607 |
| Hpy166II | GTNNAC | 1 cut(s) | 561 |
| Hpy188I | TCNGA | 5 cut(s) | 169, 293, 763, 825, 890 |
| Hpy8I | GTNNAC | 1 cut(s) | 561 |
| HpyAV | CCTTC | 8 cut(s) | 68, 85, 205, 526, 536, 571, 622, 700 |
| HpyCH4III | ACNGT | 6 cut(s) | 124, 385, 661, 736, 895, 970 |
| HpyCH4IV | ACGT | 1 cut(s) | 75 |
| HpyCH4V | TGCA | 7 cut(s) | 37, 389, 427, 555, 856, 1007, 1026 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 238, 305, 552, 815, 838 |
| HpyF3I | CTNAG | 3 cut(s) | 21, 465, 762 |
| HpySE526I | ACGT | 1 cut(s) | 75 |
| Hsp92I | GRCGYC | 1 cut(s) | 143 |
| Hsp92II | CATG | 4 cut(s) | 211, 448, 559, 880 |
| HspAI | GCGC | 2 cut(s) | 143, 350 |
| KasI | GGCGCC | 1 cut(s) | 142 |
| Kpn2I | TCCGGA | 1 cut(s) | 1066 |
| Kzo9I | GATC | 5 cut(s) | 219, 844, 982, 1128, 1153 |
| LguI | GCTCTTC | 1 cut(s) | 59 |
| LmnI | GCTCC | 4 cut(s) | 105, 229, 724, 988 |
| Lsp1109I | GCAGC | 6 cut(s) | 49, 411, 439, 593, 821, 1019 |
| LweI | GCATC | 4 cut(s) | 250, 706, 865, 1060 |
| MaeI | CTAG | 3 cut(s) | 41, 161, 1052 |
| MaeII | ACGT | 1 cut(s) | 75 |
| MaeIII | GTNAC | 4 cut(s) | 335, 367, 931, 964 |
| MalI | GATC | 5 cut(s) | 221, 846, 984, 1130, 1155 |
| MboI | GATC | 5 cut(s) | 219, 844, 982, 1128, 1153 |
| MboII | GAAGA | 9 cut(s) | 26, 46, 119, 278, 313, 509, 532, 637, 796 |
| MflI | RGATCY | 2 cut(s) | 219, 1128 |
| MhlI | GDGCHC | 1 cut(s) | 234 |
| MlsI | TGGCCA | 1 cut(s) | 308 |
| MluCI | AATT | 4 cut(s) | 487, 568, 908, 1078 |
| MluNI | TGGCCA | 1 cut(s) | 308 |
| Mly113I | GGCGCC | 1 cut(s) | 143 |
| MlyI | GAGTC | 3 cut(s) | 13, 197, 926 |
| MnlI | CCTC | 7 cut(s) | 39, 103, 220, 467, 493, 497, 873 |
| Mox20I | TGGCCA | 1 cut(s) | 308 |
| MroI | TCCGGA | 1 cut(s) | 1066 |
| MroXI | GAANNNNTTC | 1 cut(s) | 630 |
| MscI | TGGCCA | 1 cut(s) | 308 |
| MseI | TTAA | 1 cut(s) | 573 |
| Msp20I | TGGCCA | 1 cut(s) | 308 |
| MspI | CCGG | 5 cut(s) | 71, 97, 103, 868, 1067 |
| MspR9I | CCNGG | 6 cut(s) | 71, 104, 191, 224, 275, 596 |
| MvaI | CCWGG | 4 cut(s) | 191, 224, 275, 596 |
| MvnI | CGCG | 1 cut(s) | 1144 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 238, 305, 552, 815, 838 |
| NarI | GGCGCC | 1 cut(s) | 143 |
| NciI | CCSGG | 2 cut(s) | 71, 104 |
| NdeII | GATC | 5 cut(s) | 219, 844, 982, 1128, 1153 |
| NheI | GCTAGC | 1 cut(s) | 40 |
| NlaIII | CATG | 4 cut(s) | 211, 448, 559, 880 |
| NlaIV | GGNNCC | 3 cut(s) | 101, 144, 1130 |
| NmuCI | GTSAC | 3 cut(s) | 335, 931, 964 |
| NspI | RCATGY | 1 cut(s) | 559 |
| PciSI | GCTCTTC | 1 cut(s) | 59 |
| PdmI | GAANNNNTTC | 1 cut(s) | 630 |
| PfeI | GAWTC | 3 cut(s) | 170, 523, 599 |
| PfoI | TCCNGGA | 3 cut(s) | 102, 222, 594 |
| PkrI | GCNGC | 6 cut(s) | 39, 426, 429, 583, 811, 1009 |
| PleI | GAGTC | 3 cut(s) | 13, 197, 925 |
| PluTI | GGCGCC | 1 cut(s) | 146 |
| PpsI | GAGTC | 3 cut(s) | 13, 197, 925 |
| Psp124BI | GAGCTC | 1 cut(s) | 234 |
| Psp6I | CCWGG | 4 cut(s) | 189, 222, 273, 594 |
| PspGI | CCWGG | 4 cut(s) | 189, 222, 273, 594 |
| PspN4I | GGNNCC | 3 cut(s) | 101, 144, 1130 |
| PspPI | GGNCC | 2 cut(s) | 94, 187 |
| PstI | CTGCAG | 2 cut(s) | 39, 429 |
| PsuI | RGATCY | 2 cut(s) | 219, 1128 |
| RsaI | GTAC | 3 cut(s) | 551, 755, 794 |
| RsaNI | GTAC | 3 cut(s) | 550, 754, 793 |
| SacI | GAGCTC | 1 cut(s) | 234 |
| SapI | GCTCTTC | 1 cut(s) | 59 |
| SaqAI | TTAA | 1 cut(s) | 573 |
| SatI | GCNGC | 6 cut(s) | 38, 425, 428, 582, 810, 1008 |
| Sau3AI | GATC | 5 cut(s) | 219, 844, 982, 1128, 1153 |
| Sau96I | GGNCC | 2 cut(s) | 94, 187 |
| SchI | GAGTC | 3 cut(s) | 13, 197, 926 |
| ScrFI | CCNGG | 6 cut(s) | 71, 104, 191, 224, 275, 596 |
| SduI | GDGCHC | 1 cut(s) | 234 |
| SfaNI | GCATC | 4 cut(s) | 250, 706, 865, 1060 |
| SfcI | CTRYAG | 3 cut(s) | 35, 425, 1157 |
| SfoI | GGCGCC | 1 cut(s) | 144 |
| SinI | GGWCC | 2 cut(s) | 94, 187 |
| SmlI | CTYRAG | 2 cut(s) | 233, 362 |
| SmoI | CTYRAG | 2 cut(s) | 233, 362 |
| Sse9I | AATT | 4 cut(s) | 487, 568, 908, 1078 |
| SspDI | GGCGCC | 1 cut(s) | 142 |
| SspI | AATATT | 1 cut(s) | 630 |
| SspMI | CTAG | 3 cut(s) | 41, 161, 1052 |
| SstI | GAGCTC | 1 cut(s) | 234 |
| StyD4I | CCNGG | 6 cut(s) | 69, 102, 189, 222, 273, 594 |
| TaaI | ACNGT | 6 cut(s) | 124, 385, 661, 736, 895, 970 |
| TaiI | ACGT | 1 cut(s) | 78 |
| TaqI | TCGA | 2 cut(s) | 87, 565 |
| TasI | AATT | 4 cut(s) | 487, 568, 908, 1078 |
| TatI | WGTACW | 2 cut(s) | 549, 792 |
| TfiI | GAWTC | 3 cut(s) | 170, 523, 599 |
| Tru1I | TTAA | 1 cut(s) | 573 |
| Tru9I | TTAA | 1 cut(s) | 573 |
| TscAI | CASTG | 2 cut(s) | 975, 1028 |
| TseFI | GTSAC | 3 cut(s) | 335, 931, 964 |
| TseI | GCWGC | 6 cut(s) | 37, 424, 427, 581, 809, 1007 |
| Tsp45I | GTSAC | 3 cut(s) | 335, 931, 964 |
| TspDTI | ATGAA | 8 cut(s) | 168, 224, 261, 313, 555, 637, 967, 991 |
| TspGWI | ACGGA | 1 cut(s) | 317 |
| TspRI | CASTG | 2 cut(s) | 975, 1028 |
| VpaK11BI | GGWCC | 2 cut(s) | 94, 187 |
| XapI | RAATTY | 3 cut(s) | 487, 568, 1078 |
| XbaI | TCTAGA | 1 cut(s) | 1051 |
| XceI | RCATGY | 1 cut(s) | 559 |
| XmnI | GAANNNNTTC | 1 cut(s) | 630 |
| XspI | CTAG | 3 cut(s) | 41, 161, 1052 |