Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005007

Physical Location & Seq

Genomic Coordinates Reverse (-)

18767078 .. 18769657

Gene Structure 2580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g13920.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGAAGCCCAAGAGGGGACGCAGCAGCCACACCTCGTGCTCGCAAACAAACTCTTCCTTCTCTCCCATTCCGATGTCCCGGACATCGAAAAGGTCCAACTCAGGGAGGAGGTTTTTGCCTCCGTCAAAGACGACGATATGGCGCCGTTGTACGAAACCCTAGTCGCCGAATCGGTGCTCAAGCTGGACCAGGGCGTTATGGACTCGATGAGAGCGAAGAACCAGGAGGAGCTCAAGAAGCTCGATGAAAAGATTGCTGATGCGGAAGAAAACTTAGGGGAAAGTGAGGTTCGAGAAGCTCATCTGGCCAAGTCCCTGTTCTTCATTCGTATTGGCGACAAGGAGAAAGCATTGGAACAACTCAAGGTAACGGAAAGCAAGACAGTTGCAGTTGGGCAAAAGATGGACTTGGTCTTCCATACACTGCAACTCGGTTTCTTTTACATGGATTTTGACCTCATTTCTAAGAGTATTGACAAAGCGAAGAATTTATTTGAAGAGGGTGGTGATTGGGAAAGGAAGAACCGTTTAAAGGTGTATGAAGGCTTGTACTGCATGTCCACTCGCAATTTTAAGAAGGCTGCTGATCTGTTCTTGGATTCCATTTCTACCTTCACCACTTATGAGATATTTCCGTATGACATCTTCATATTTTATACCGTCGTGGATGCTCCAGAAATATTGACAGTGATTGGGAAAATTCCCTACCTTACAGAGTTTTTGAACTCTCTATATGATTGCCAATACAAATCATTTTTCAAAGCATTTGCTGGCCTGACAGAGCAGATAAAGTTGGACCGTTATTTGCACCCACACTTCAGGTATTACATGAGGGAGATCAGAACTGTTGTTTATTCTCAGTTCTTGGAGTCCTACAAGAGTGTTACTATTGAAGCTATGGCTAAAGCTTTTGGCGTGACCTTGGATTTCATTGATCTGGAGCTATCTCGTTTCATTGCAGCAGGGAAGCTTCATTGCAAGATTGACAAAGTTGCCGGTGTTTTAGAAACCAATCGTCCTGATGCTAAGAATTCACTGTACCAAGCAACCATCAAGCAAGGGGACTTCTTATTGAACCGTATCCAGAAGCTATCTCGTGTCATTGACCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03050 ko04066 ko05010 ko05169 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03050 map04066 map05010 map05169

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

371

Amino Acids

42.67

Weight (kDa)

5.38

Isoelectric Point (pI)

29.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24820 AT4G24820
fragaria_vesca	FvH4_3g25540
malus_domestica	MD06G1151500.v1.1 MD06G1156100.v1.1 MD14G1163300.v1.1
prunus_persica	Prupe.5G156700_v2.0.a1
pyrus_communis	pycom06g13920 pycom14g13590
rosa_chinensis	RchiOBHm_Chr5g0017921 RchiOBHm_Chr5g0044171 RchiOBHm_Chr5g0065961 RchiOBHm_Chr7g0191031 RchiOBHm_Chr7g0191061
rosa_laevigata	RLG00000004478
rosa_multiflora	Rmu_sc0000184.1_g000009 Rmu_sc0002080.1_g000014 Rmu_sc0005637.1_g000001 Rmu_sc0015000.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036890 Rroxscaffold_3G00264070
rosa_rugosa	Rorug06G0508300
rosa_samantha	Rh7AG115600 Rh7BG117900 Rh7BG118300 Rh7CG120800 Rh7CG186900 Rh7DG119300
rosa_wichuraiana	Rw2G007700 Rw7G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AciI	CCGC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	3 cut(s)	487, 699, 1030
AcuI	CTGAAG	1 cut(s)	802
AcyI	GRCGYC	1 cut(s)	143
AdeI	CACNNNGTG	1 cut(s)	37
AfaI	GTAC	3 cut(s)	152, 551, 1040
AfiI	CCNNNNNNNGG	3 cut(s)	15, 103, 532
AgsI	TTSAA	5 cut(s)	497, 724, 760, 893, 1075
AjnI	CCWGG	2 cut(s)	189, 222
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AluBI	AGCT	9 cut(s)	184, 232, 241, 299, 896, 908, 943, 970, 1090
AluI	AGCT	9 cut(s)	184, 232, 241, 299, 896, 908, 943, 970, 1090
Alw21I	GWGCWC	3 cut(s)	42, 180, 234
AoxI	GGCC	2 cut(s)	306, 772
ApeKI	GCWGC	4 cut(s)	22, 25, 581, 959
ApoI	RAATTY	3 cut(s)	487, 699, 1030
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	3 cut(s)	94, 187, 796
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	2 cut(s)	518, 607
AvaII	GGWCC	3 cut(s)	94, 187, 796
BalI	TGGCCA	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	234
BarI	GAAGNNNNNNTAC	2 cut(s)	629, 661
BauI	CACGAG	2 cut(s)	35, 1095
BbsI	GAAGAC	1 cut(s)	406
Bbv12I	GWGCWC	3 cut(s)	42, 180, 234
BbvI	GCAGC	4 cut(s)	34, 37, 568, 971
BccI	CCATC	2 cut(s)	397, 1058
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	2 cut(s)	191, 224
BciVI	GTATCC	1 cut(s)	1091
BcnI	CCSGG	1 cut(s)	80
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	1109
BfoI	RGCGCY	1 cut(s)	146
BfuI	GTATCC	1 cut(s)	1091
BisI	GCNGC	4 cut(s)	23, 26, 582, 960
BlsI	GCNGC	4 cut(s)	24, 27, 583, 961
Bme1390I	CCNGG	3 cut(s)	80, 191, 224
Bme18I	GGWCC	3 cut(s)	94, 187, 796
BmgT120I	GGNCC	3 cut(s)	94, 187, 796
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	3 cut(s)	80, 191, 224
BmsI	GCATC	3 cut(s)	250, 658, 1012
BpiI	GAAGAC	1 cut(s)	406
BpmI	CTGGAG	2 cut(s)	657, 959
BpuEI	CTTGAG	3 cut(s)	164, 218, 347
BpuMI	CCSGG	1 cut(s)	80
BsaHI	GRCGYC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	190, 921
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 103, 532
Bse118I	RCCGGY	1 cut(s)	995
Bse3DI	GCAATG	2 cut(s)	954, 973
BseBI	CCWGG	2 cut(s)	191, 224
BseDI	CCNNGG	2 cut(s)	190, 921
BseGI	GGATG	1 cut(s)	673
BseLI	CCNNNNNNNGG	3 cut(s)	15, 103, 532
BseMI	GCAATG	2 cut(s)	954, 973
BseMII	CTCAG	2 cut(s)	115, 872
BseRI	GAGGAG	2 cut(s)	122, 242
BseXI	GCAGC	4 cut(s)	34, 37, 568, 971
BshFI	GGCC	2 cut(s)	308, 774
BshNI	GGYRCC	1 cut(s)	142
BsiHKAI	GWGCWC	3 cut(s)	42, 180, 234
BsiSI	CCGG	2 cut(s)	80, 996
BslFI	GGGAC	4 cut(s)	31, 62, 298, 1076
BslI	CCNNNNNNNGG	3 cut(s)	15, 103, 532
BsmFI	GGGAC	4 cut(s)	31, 62, 298, 1076
BsnI	GGCC	2 cut(s)	308, 774
Bsp1286I	GDGCHC	3 cut(s)	42, 180, 234
Bsp143I	GATC	3 cut(s)	586, 837, 934
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	2 cut(s)	308, 774
BspCNI	CTCAG	2 cut(s)	114, 871
BspLI	GGNNCC	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	142
BsrDI	GCAATG	2 cut(s)	954, 973
BsrFI	RCCGGY	1 cut(s)	995
BssAI	RCCGGY	1 cut(s)	995
BssECI	CCNNGG	2 cut(s)	190, 921
BssMI	GATC	3 cut(s)	586, 837, 934
BssNI	GRCGYC	1 cut(s)	143
BssSI	CACGAG	2 cut(s)	35, 1095
BssT1I	CCWWGG	1 cut(s)	921
Bst2BI	CACGAG	2 cut(s)	35, 1095
Bst2UI	CCWGG	2 cut(s)	191, 224
Bst4CI	ACNGT	8 cut(s)	385, 527, 661, 688, 800, 847, 1038, 1079
Bst6I	CTCTTC	2 cut(s)	59, 492
BstACI	GRCGYC	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	42, 772
BstDEI	CTNAG	5 cut(s)	101, 274, 465, 858, 1026
BstF5I	GGATG	1 cut(s)	673
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	3 cut(s)	589, 840, 937
BstMBI	GATC	3 cut(s)	586, 837, 934
BstMWI	GCNNNNNNNGC	3 cut(s)	238, 305, 552
BstNI	CCWGG	2 cut(s)	191, 224
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	3 cut(s)	78, 189, 222
BstSFI	CTRYAG	1 cut(s)	1109
BstV1I	GCAGC	4 cut(s)	34, 37, 568, 971
BstV2I	GAAGAC	1 cut(s)	406
BsuI	GTATCC	1 cut(s)	1091
BsuRI	GGCC	2 cut(s)	308, 774
BtsCI	GGATG	1 cut(s)	673
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	3 cut(s)	422, 693, 1034
Cac8I	GCNNGC	2 cut(s)	42, 772
CfoI	GCGC	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	995
Cfr13I	GGNCC	3 cut(s)	94, 187, 796
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	3 cut(s)	151, 550, 1039
CviAII	CATG	3 cut(s)	445, 556, 829
CviQI	GTAC	3 cut(s)	151, 550, 1039
DdeI	CTNAG	5 cut(s)	101, 274, 465, 858, 1026
DinI	GGCGCC	1 cut(s)	144
DpnI	GATC	3 cut(s)	588, 839, 936
DpnII	GATC	3 cut(s)	586, 837, 934
DraI	TTTAAA	1 cut(s)	531
DraIII	CACNNNGTG	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	2 cut(s)	59, 492
EarI	CTCTTC	2 cut(s)	59, 492
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	921
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	3 cut(s)	94, 187, 796
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	802
EcoICRI	GAGCTC	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	1030
EcoRII	CCWGG	2 cut(s)	189, 222
EcoT14I	CCWWGG	1 cut(s)	921
EcoT38I	GRGCYC	1 cut(s)	234
EgeI	GGCGCC	1 cut(s)	144
EheI	GGCGCC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	921
FaeI	CATG	3 cut(s)	448, 559, 832
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	4 cut(s)	31, 62, 298, 1076
FatI	CATG	3 cut(s)	444, 555, 828
Fnu4HI	GCNGC	4 cut(s)	23, 26, 582, 960
FokI	GGATG	1 cut(s)	680
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	4 cut(s)	23, 26, 582, 960
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	4 cut(s)	23, 26, 582, 960
GsuI	CTGGAG	2 cut(s)	657, 959
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	2 cut(s)	308, 774
HapII	CCGG	2 cut(s)	80, 996
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	3 cut(s)	448, 559, 832
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HindIII	AAGCTT	2 cut(s)	906, 968
HinfI	GANTC	4 cut(s)	170, 203, 599, 869
HpaII	CCGG	2 cut(s)	80, 996
HphI	GGTGA	2 cut(s)	518, 607
Hpy166II	GTNNAC	1 cut(s)	561
Hpy188I	TCNGA	2 cut(s)	73, 842
Hpy188III	TCNNGA	6 cut(s)	235, 293, 674, 938, 1019, 1084
Hpy8I	GTNNAC	1 cut(s)	561
Hpy99I	CGWCG	2 cut(s)	137, 665
HpyAV	CCTTC	4 cut(s)	68, 536, 571, 622
HpyCH4III	ACNGT	8 cut(s)	385, 527, 661, 688, 800, 847, 1038, 1079
HpyCH4V	TGCA	6 cut(s)	389, 427, 555, 808, 959, 978
HpyF10VI	GCNNNNNNNGC	3 cut(s)	238, 305, 552
HpyF3I	CTNAG	5 cut(s)	101, 274, 465, 858, 1026
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	3 cut(s)	448, 559, 832
HspAI	GCGC	1 cut(s)	143
KasI	GGCGCC	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	586, 837, 934
LmnI	GCTCC	3 cut(s)	229, 676, 940
Lsp1109I	GCAGC	4 cut(s)	34, 37, 568, 971
LweI	GCATC	3 cut(s)	250, 658, 1012
MaeI	CTAG	1 cut(s)	161
MaeIII	GTNAC	3 cut(s)	367, 883, 916
MalI	GATC	3 cut(s)	588, 839, 936
MboI	GATC	3 cut(s)	586, 837, 934
MboII	GAAGA	9 cut(s)	46, 229, 278, 313, 406, 496, 509, 532, 637
MhlI	GDGCHC	3 cut(s)	42, 180, 234
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	4 cut(s)	487, 568, 699, 1030
MluNI	TGGCCA	1 cut(s)	308
Mly113I	GGCGCC	1 cut(s)	143
MlyI	GAGTC	2 cut(s)	197, 878
MmeI	TCCRAC	2 cut(s)	121, 774
Mox20I	TGGCCA	1 cut(s)	308
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	2 cut(s)	530, 573
MslI	CAYNNNNRTG	1 cut(s)	72
Msp20I	TGGCCA	1 cut(s)	308
MspI	CCGG	2 cut(s)	80, 996
MspR9I	CCNGG	3 cut(s)	80, 191, 224
MvaI	CCWGG	2 cut(s)	191, 224
MwoI	GCNNNNNNNGC	3 cut(s)	238, 305, 552
NarI	GGCGCC	1 cut(s)	143
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	3 cut(s)	586, 837, 934
NlaIII	CATG	3 cut(s)	448, 559, 832
NlaIV	GGNNCC	1 cut(s)	144
NmuCI	GTSAC	1 cut(s)	916
NspI	RCATGY	1 cut(s)	559
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PfeI	GAWTC	2 cut(s)	170, 599
PflFI	GACNNNGTC	1 cut(s)	410
PfoI	TCCNGGA	1 cut(s)	78
PkrI	GCNGC	4 cut(s)	24, 27, 583, 961
PleI	GAGTC	2 cut(s)	197, 877
PluTI	GGCGCC	1 cut(s)	146
PpsI	GAGTC	2 cut(s)	197, 877
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	189, 222
PspGI	CCWGG	2 cut(s)	189, 222
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	3 cut(s)	94, 187, 796
PsyI	GACNNNGTC	1 cut(s)	410
RsaI	GTAC	3 cut(s)	152, 551, 1040
RsaNI	GTAC	3 cut(s)	151, 550, 1039
RseI	CAYNNNNRTG	1 cut(s)	72
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	530, 573
SatI	GCNGC	4 cut(s)	23, 26, 582, 960
Sau3AI	GATC	3 cut(s)	586, 837, 934
Sau96I	GGNCC	3 cut(s)	94, 187, 796
SchI	GAGTC	2 cut(s)	197, 878
ScrFI	CCNGG	3 cut(s)	80, 191, 224
SduI	GDGCHC	3 cut(s)	42, 180, 234
SfaNI	GCATC	3 cut(s)	250, 658, 1012
SfcI	CTRYAG	1 cut(s)	1109
SfoI	GGCGCC	1 cut(s)	144
SinI	GGWCC	3 cut(s)	94, 187, 796
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	3 cut(s)	179, 233, 362
SmoI	CTYRAG	3 cut(s)	179, 233, 362
Sse9I	AATT	4 cut(s)	487, 568, 699, 1030
SsiI	CCGC	1 cut(s)	263
SspDI	GGCGCC	1 cut(s)	142
SspI	AATATT	1 cut(s)	681
SspMI	CTAG	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	3 cut(s)	78, 189, 222
StyI	CCWWGG	1 cut(s)	921
TaaI	ACNGT	8 cut(s)	385, 527, 661, 688, 800, 847, 1038, 1079
TaqI	TCGA	4 cut(s)	87, 206, 243, 292
TasI	AATT	4 cut(s)	487, 568, 699, 1030
TatI	WGTACW	1 cut(s)	549
TfiI	GAWTC	2 cut(s)	170, 599
Tru1I	TTAA	2 cut(s)	530, 573
Tru9I	TTAA	2 cut(s)	530, 573
TscAI	CASTG	3 cut(s)	429, 693, 1041
TseFI	GTSAC	1 cut(s)	916
TseI	GCWGC	4 cut(s)	22, 25, 581, 959
Tsp45I	GTSAC	1 cut(s)	916
TspDTI	ATGAA	7 cut(s)	261, 313, 555, 637, 919, 943, 962
TspGWI	ACGGA	3 cut(s)	112, 386, 624
TspRI	CASTG	3 cut(s)	429, 693, 1041
Tth111I	GACNNNGTC	1 cut(s)	410
VpaK11BI	GGWCC	3 cut(s)	94, 187, 796
XapI	RAATTY	3 cut(s)	487, 699, 1030
XceI	RCATGY	1 cut(s)	559
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.