Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005007

Physical Location & Seq

Genomic Coordinates Reverse (-)

13952706 .. 13955300

Gene Structure 2595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G156700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGAAGGCCAAGAAGGACCTCAGCAACCGCACCTCGTGCTGGCTCACAAGCTCTTCCTTCTCTCCCACCCTGATGTCCAAGACATCGAGAAGGTCCAACTCAGAGAGGAGGTTTTCGCTTCCGTCAAAGCTGACGATATGGCACCGTTGTACGAAACTCTGGTCTCTGAATCGGTGCTGCCGTTGGACCAGAGCGTTTTGGACTCGATGCGCGCGAAGATCCAGGACGAGCTCAAGAAGCTCGACGAAAAGATTGCTGATGCCGAAGAGAACTTGGGCGAAAGTGAGGTTCGAGAAGCCCATCTGGCTAAGTCCTTGTTTTTCATTCGTATTGGTGACAAGGAGAAAGCACTGGAACAACTCAAGGTAACAGAAAGCAAAACAGTTGCAGTTGGGCAAAAGATGGACTTGGTATTCTATACACTGCAACTTGGTTTCTTTTATATGGATTTTGACCTCATTTCGAAGAGCATTGACAAAGCGAAGAACTTATTTGAAGAGGGAGGTGATTGGGAAAGGAAGAATCGTCTGAAGGTCTATGAAGGCTTGTACTGCATGTCTACTCGAAATTTTAAGAAGGCTGCTGATTTGTTCTTGGATTCCATTTCTACCTTCACCACTTATGAAATATTTCCGTATGATATCTTCATATTTTATACTGTCCTTACGAGCATTATATCGTTGGACAGAGTTTCTTTGAAACAAAAGGTGGTGGATGCTCCTGAGATATTAACAGTGATTGGGAAAATCCCGTACCTTACAGAATTTTTGAACTCTCTATATGAATGCCAATACAAATCTTTTTTCGCAGCATTTGCTGGCCTGACAGAGCAGATAAAGTTGGACCGTTATTTGCATCCACACTTCCGATATTACATGAGGGAGATCAGAACTGTGGTTTATTCCCAGTTCTTGGAATCCTACAAGAGTGTTACTATTGAAGCAATGGCGAAAGCATTTGGCGTGACGGTTGATTTCATTGATTTGGAGCTGTCTCGTTTCATTGCGGCAGGGAAGCTTCATTGCAAGATTGACAAGGTTGCTGGTGTTCTAGAAACTAACCGTCCTGATGCTAAGAATTCTCTCTACCAAGCAACAATCAAGCAAGGGGATTTCTTGTTAAACCGGATCCAGAAGCTGTCTCGTGTTATTGATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03050 ko04066 ko05010 ko05169 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03050 map04066 map05010 map05169

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

387

Amino Acids

44.4

Weight (kDa)

5.47

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24820 AT4G24820
fragaria_vesca	FvH4_3g25540
malus_domestica	MD06G1151500.v1.1 MD06G1156100.v1.1 MD14G1163300.v1.1
prunus_persica	Prupe.5G156700_v2.0.a1
pyrus_communis	pycom06g13920 pycom14g13590
rosa_chinensis	RchiOBHm_Chr5g0017921 RchiOBHm_Chr5g0044171 RchiOBHm_Chr5g0065961 RchiOBHm_Chr7g0191031 RchiOBHm_Chr7g0191061
rosa_laevigata	RLG00000004478
rosa_multiflora	Rmu_sc0000184.1_g000009 Rmu_sc0002080.1_g000014 Rmu_sc0005637.1_g000001 Rmu_sc0015000.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036890 Rroxscaffold_3G00264070
rosa_rugosa	Rorug06G0508300
rosa_samantha	Rh7AG115600 Rh7BG117900 Rh7BG118300 Rh7CG120800 Rh7CG186900 Rh7DG119300
rosa_wichuraiana	Rw2G007700 Rw7G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AccB7I	CCANNNNNTGG	1 cut(s)	913
AccI	GTMKAC	1 cut(s)	560
AccII	CGCG	2 cut(s)	213, 215
AciI	CCGC	2 cut(s)	29, 1007
AclWI	GGATC	3 cut(s)	214, 1123, 1136
AcsI	RAATTY	3 cut(s)	568, 764, 1078
AcuI	CTGAAG	1 cut(s)	551
AdeI	CACNNNGTG	1 cut(s)	37
AfaI	GTAC	3 cut(s)	152, 551, 755
AfiI	CCNNNNNNNGG	2 cut(s)	40, 913
AgsI	TTSAA	4 cut(s)	497, 700, 772, 941
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	7 cut(s)	52, 131, 232, 241, 991, 1018, 1138
AluI	AGCT	7 cut(s)	52, 131, 232, 241, 991, 1018, 1138
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	3 cut(s)	169, 999, 1146
AlwI	GGATC	3 cut(s)	214, 1123, 1136
AlwNI	CAGNNNCTG	1 cut(s)	1138
AoxI	GGCC	2 cut(s)	7, 820
ApeKI	GCWGC	3 cut(s)	178, 581, 809
ApoI	RAATTY	3 cut(s)	568, 764, 1078
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
Asp700I	GAANNNNTTC	1 cut(s)	630
AspLEI	GCGC	2 cut(s)	213, 215
AspS9I	GGNCC	4 cut(s)	17, 94, 187, 844
AsuHPI	GGTGA	3 cut(s)	347, 518, 607
AsuII	TTCGAA	1 cut(s)	464
AvaII	GGWCC	4 cut(s)	17, 94, 187, 844
BamHI	GGATCC	1 cut(s)	1128
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	234
BarI	GAAGNNNNNNTAC	2 cut(s)	629, 661
BauI	CACGAG	2 cut(s)	35, 1143
Bbv12I	GWGCWC	1 cut(s)	234
BbvCI	CCTCAGC	1 cut(s)	21
BbvI	GCAGC	3 cut(s)	165, 568, 821
BccI	CCATC	2 cut(s)	309, 397
BceAI	ACGGC	1 cut(s)	166
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	1 cut(s)	224
BcoDI	GTCTC	3 cut(s)	169, 999, 1146
BfaI	CTAG	1 cut(s)	1052
BfmI	CTRYAG	1 cut(s)	1157
BglI	GCCNNNNNGGC	1 cut(s)	305
BisI	GCNGC	4 cut(s)	179, 582, 810, 1008
BlsI	GCNGC	4 cut(s)	180, 583, 811, 1009
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	4 cut(s)	17, 94, 187, 844
BmgT120I	GGNCC	4 cut(s)	17, 94, 187, 844
BmiI	GGNNCC	2 cut(s)	144, 1130
BmrFI	CCNGG	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	901
BmsI	GCATC	5 cut(s)	198, 250, 706, 865, 1060
BmuI	ACTGGG	1 cut(s)	901
Bpu10I	CCTNAGC	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	464
BpuEI	CTTGAG	2 cut(s)	218, 347
BsaI	GGTCTC	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	1125
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 913
Bse1I	ACTGG	2 cut(s)	357, 907
Bse3DI	GCAATG	3 cut(s)	951, 1002, 1021
BseBI	CCWGG	1 cut(s)	224
BseGI	GGATG	2 cut(s)	721, 856
BseLI	CCNNNNNNNGG	2 cut(s)	40, 913
BseMI	GCAATG	3 cut(s)	951, 1002, 1021
BseMII	CTCAG	3 cut(s)	35, 115, 714
BseNI	ACTGG	2 cut(s)	357, 907
BsePI	GCGCGC	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	3 cut(s)	165, 568, 821
Bsh1236I	CGCG	2 cut(s)	213, 215
BshFI	GGCC	2 cut(s)	9, 822
BshNI	GGYRCC	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	1126
BslI	CCNNNNNNNGG	2 cut(s)	40, 913
BsmAI	GTCTC	3 cut(s)	169, 999, 1146
BsmI	GAATGC	1 cut(s)	791
BsnI	GGCC	2 cut(s)	9, 822
Bso31I	GGTCTC	1 cut(s)	169
Bsp119I	TTCGAA	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	4 cut(s)	219, 885, 1128, 1153
BspACI	CCGC	2 cut(s)	29, 1007
BspANI	GGCC	2 cut(s)	9, 822
BspCNI	CTCAG	3 cut(s)	34, 114, 715
BspFNI	CGCG	2 cut(s)	213, 215
BspLI	GGNNCC	2 cut(s)	144, 1130
BspPI	GGATC	3 cut(s)	214, 1123, 1136
BspQI	GCTCTTC	2 cut(s)	59, 461
BspT104I	TTCGAA	1 cut(s)	464
BspT107I	GGYRCC	1 cut(s)	142
BspTNI	GGTCTC	1 cut(s)	169
BsrDI	GCAATG	3 cut(s)	951, 1002, 1021
BsrI	ACTGG	2 cut(s)	357, 907
BssHII	GCGCGC	1 cut(s)	211
BssMI	GATC	4 cut(s)	219, 885, 1128, 1153
BssSI	CACGAG	2 cut(s)	35, 1143
Bst2BI	CACGAG	2 cut(s)	35, 1143
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	8 cut(s)	147, 385, 661, 736, 848, 895, 970, 1064
Bst6I	CTCTTC	4 cut(s)	59, 261, 461, 492
BstAPI	GCANNNNNTGC	2 cut(s)	37, 815
BstBI	TTCGAA	1 cut(s)	464
BstC8I	GCNNGC	3 cut(s)	42, 213, 820
BstDEI	CTNAG	5 cut(s)	21, 101, 309, 723, 1074
BstF5I	GGATG	2 cut(s)	721, 856
BstFNI	CGCG	2 cut(s)	213, 215
BstHHI	GCGC	2 cut(s)	213, 215
BstKTI	GATC	4 cut(s)	222, 888, 1131, 1156
BstMAI	GTCTC	3 cut(s)	169, 999, 1146
BstMBI	GATC	4 cut(s)	219, 885, 1128, 1153
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 238, 305, 552, 815
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	1 cut(s)	1157
BstUI	CGCG	2 cut(s)	213, 215
BstV1I	GCAGC	3 cut(s)	165, 568, 821
BstX2I	RGATCY	2 cut(s)	219, 1128
BstYI	RGATCY	2 cut(s)	219, 1128
BsuRI	GGCC	2 cut(s)	9, 822
BtsCI	GGATG	2 cut(s)	721, 856
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	3 cut(s)	350, 422, 741
Cac8I	GCNNGC	3 cut(s)	42, 213, 820
CaiI	CAGNNNCTG	1 cut(s)	1138
CfoI	GCGC	2 cut(s)	213, 215
Cfr13I	GGNCC	4 cut(s)	17, 94, 187, 844
Csp6I	GTAC	3 cut(s)	151, 550, 754
CviAII	CATG	2 cut(s)	556, 877
CviQI	GTAC	3 cut(s)	151, 550, 754
DdeI	CTNAG	5 cut(s)	21, 101, 309, 723, 1074
DpnI	GATC	4 cut(s)	221, 887, 1130, 1155
DpnII	GATC	4 cut(s)	219, 885, 1128, 1153
DraIII	CACNNNGTG	1 cut(s)	37
Eam1104I	CTCTTC	4 cut(s)	59, 261, 461, 492
EarI	CTCTTC	4 cut(s)	59, 261, 461, 492
Ecl136II	GAGCTC	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	169
Eco32I	GATATC	1 cut(s)	643
Eco47I	GGWCC	4 cut(s)	17, 94, 187, 844
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	551
EcoICRI	GAGCTC	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	17
EcoRI	GAATTC	1 cut(s)	1078
EcoRII	CCWGG	1 cut(s)	222
EcoRV	GATATC	1 cut(s)	643
EcoT38I	GRGCYC	1 cut(s)	234
FaeI	CATG	2 cut(s)	559, 880
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FatI	CATG	2 cut(s)	555, 876
FblI	GTMKAC	1 cut(s)	560
Fnu4HI	GCNGC	4 cut(s)	179, 582, 810, 1008
FokI	GGATG	2 cut(s)	728, 843
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	4 cut(s)	179, 582, 810, 1008
FspBI	CTAG	1 cut(s)	1052
GlaI	GCGC	2 cut(s)	212, 214
GluI	GCNGC	4 cut(s)	179, 582, 810, 1008
HaeIII	GGCC	2 cut(s)	9, 822
HapII	CCGG	1 cut(s)	1126
HhaI	GCGC	2 cut(s)	213, 215
Hin1II	CATG	2 cut(s)	559, 880
Hin6I	GCGC	2 cut(s)	211, 213
HinP1I	GCGC	2 cut(s)	211, 213
HindIII	AAGCTT	1 cut(s)	1016
HinfI	GANTC	5 cut(s)	170, 203, 523, 599, 917
HpaII	CCGG	1 cut(s)	1126
HphI	GGTGA	3 cut(s)	347, 518, 607
Hpy166II	GTNNAC	1 cut(s)	561
Hpy188I	TCNGA	5 cut(s)	104, 169, 531, 869, 890
Hpy188III	TCNNGA	7 cut(s)	88, 235, 293, 722, 1052, 1067, 1132
Hpy8I	GTNNAC	1 cut(s)	561
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	7 cut(s)	8, 68, 85, 526, 536, 571, 622
HpyCH4III	ACNGT	8 cut(s)	147, 385, 661, 736, 848, 895, 970, 1064
HpyCH4V	TGCA	5 cut(s)	389, 427, 555, 856, 1026
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 238, 305, 552, 815
HpyF3I	CTNAG	5 cut(s)	21, 101, 309, 723, 1074
Hsp92II	CATG	2 cut(s)	559, 880
HspAI	GCGC	2 cut(s)	211, 213
Kzo9I	GATC	4 cut(s)	219, 885, 1128, 1153
LguI	GCTCTTC	2 cut(s)	59, 461
LmnI	GCTCC	2 cut(s)	724, 988
Lsp1109I	GCAGC	3 cut(s)	165, 568, 821
LweI	GCATC	5 cut(s)	198, 250, 706, 865, 1060
MaeI	CTAG	1 cut(s)	1052
MaeIII	GTNAC	4 cut(s)	335, 367, 931, 964
MalI	GATC	4 cut(s)	221, 887, 1130, 1155
MboI	GATC	4 cut(s)	219, 885, 1128, 1153
MboII	GAAGA	8 cut(s)	46, 229, 278, 478, 496, 509, 532, 637
MflI	RGATCY	2 cut(s)	219, 1128
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	3 cut(s)	568, 764, 1078
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	4 cut(s)	121, 165, 663, 822
MnlI	CCTC	9 cut(s)	30, 44, 100, 103, 280, 467, 493, 497, 873
MroXI	GAANNNNTTC	1 cut(s)	630
MseI	TTAA	3 cut(s)	573, 731, 1121
MslI	CAYNNNNRTG	1 cut(s)	72
MspI	CCGG	1 cut(s)	1126
MspR9I	CCNGG	1 cut(s)	224
Mva1269I	GAATGC	1 cut(s)	791
MvaI	CCWGG	1 cut(s)	224
MvnI	CGCG	2 cut(s)	213, 215
MwoI	GCNNNNNNNGC	5 cut(s)	37, 238, 305, 552, 815
NdeII	GATC	4 cut(s)	219, 885, 1128, 1153
NlaIII	CATG	2 cut(s)	559, 880
NlaIV	GGNNCC	2 cut(s)	144, 1130
NmuCI	GTSAC	2 cut(s)	335, 964
NspI	RCATGY	1 cut(s)	559
NspV	TTCGAA	1 cut(s)	464
PauI	GCGCGC	1 cut(s)	211
PciSI	GCTCTTC	2 cut(s)	59, 461
PcsI	WCGNNNNNNNCGW	2 cut(s)	179, 212
PctI	GAATGC	1 cut(s)	791
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	4 cut(s)	170, 523, 599, 917
PflMI	CCANNNNNTGG	1 cut(s)	913
PfoI	TCCNGGA	1 cut(s)	222
PkrI	GCNGC	4 cut(s)	180, 583, 811, 1009
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PpuMI	RGGWCCY	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	144, 1130
PspPI	GGNCC	4 cut(s)	17, 94, 187, 844
PspPPI	RGGWCCY	1 cut(s)	17
PstNI	CAGNNNCTG	1 cut(s)	1138
PsuI	RGATCY	2 cut(s)	219, 1128
PteI	GCGCGC	1 cut(s)	211
RsaI	GTAC	3 cut(s)	152, 551, 755
RsaNI	GTAC	3 cut(s)	151, 550, 754
RseI	CAYNNNNRTG	1 cut(s)	72
SacI	GAGCTC	1 cut(s)	234
SapI	GCTCTTC	2 cut(s)	59, 461
SaqAI	TTAA	3 cut(s)	573, 731, 1121
SatI	GCNGC	4 cut(s)	179, 582, 810, 1008
Sau3AI	GATC	4 cut(s)	219, 885, 1128, 1153
Sau96I	GGNCC	4 cut(s)	17, 94, 187, 844
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	234
SfaNI	GCATC	5 cut(s)	198, 250, 706, 865, 1060
SfcI	CTRYAG	1 cut(s)	1157
SfuI	TTCGAA	1 cut(s)	464
SinI	GGWCC	4 cut(s)	17, 94, 187, 844
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	2 cut(s)	233, 362
SmoI	CTYRAG	2 cut(s)	233, 362
Sse9I	AATT	3 cut(s)	568, 764, 1078
SsiI	CCGC	2 cut(s)	29, 1007
SspI	AATATT	1 cut(s)	630
SspMI	CTAG	1 cut(s)	1052
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	222
TaaI	ACNGT	8 cut(s)	147, 385, 661, 736, 848, 895, 970, 1064
TaqI	TCGA	6 cut(s)	87, 206, 243, 292, 464, 565
TasI	AATT	3 cut(s)	568, 764, 1078
TatI	WGTACW	1 cut(s)	549
TauI	GCSGC	1 cut(s)	1010
TfiI	GAWTC	4 cut(s)	170, 523, 599, 917
Tru1I	TTAA	3 cut(s)	573, 731, 1121
Tru9I	TTAA	3 cut(s)	573, 731, 1121
TscAI	CASTG	3 cut(s)	357, 429, 741
TseFI	GTSAC	2 cut(s)	335, 964
TseI	GCWGC	3 cut(s)	178, 581, 809
Tsp45I	GTSAC	2 cut(s)	335, 964
TspDTI	ATGAA	8 cut(s)	313, 555, 637, 639, 798, 967, 991, 1010
TspGWI	ACGGA	2 cut(s)	112, 624
TspRI	CASTG	3 cut(s)	357, 429, 741
Van91I	CCANNNNNTGG	1 cut(s)	913
VpaK11BI	GGWCC	4 cut(s)	17, 94, 187, 844
XapI	RAATTY	3 cut(s)	568, 764, 1078
XbaI	TCTAGA	1 cut(s)	1051
XceI	RCATGY	1 cut(s)	559
XmiI	GTMKAC	1 cut(s)	560
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	1 cut(s)	1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.