Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005007

Physical Location & Seq

Genomic Coordinates Forward (+)

53841670 .. 53842207

Gene Structure 538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00036890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGATTGTCGGTATTATTCACGTATTTGCTGGTCTGCTAGAGCAGATAACGCTAGATCTTTATTTGCATCCACACTTCCAGTATTACATGAGGGAGATCAGAACCATTGTTTATTCTCAATTTTTGGAATCTAACAAAAGTGTCACTACCGAAGCAATGGTGAAGGCATTTGGCGCAACAGTGAATTTCATTGATCTGGAGTTGTCTCGGTTCATTGCAGCAAGGAAACTCCACCGCAAGATAGATAAAGTTTCAAGTGTTCTAGAAATGAATTGTCCAGATGCCACGACTTCTCTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03050 ko04066 ko05010 ko05169 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03050 map04066 map05010 map05169

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

100

Amino Acids

11.51

Weight (kDa)

6.9

Isoelectric Point (pI)

18.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	14 - 91	2.6e-11	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24820 AT4G24820
fragaria_vesca	FvH4_3g25540
malus_domestica	MD06G1151500.v1.1 MD06G1156100.v1.1 MD14G1163300.v1.1
prunus_persica	Prupe.5G156700_v2.0.a1
pyrus_communis	pycom06g13920 pycom14g13590
rosa_chinensis	RchiOBHm_Chr5g0017921 RchiOBHm_Chr5g0044171 RchiOBHm_Chr5g0065961 RchiOBHm_Chr7g0191031 RchiOBHm_Chr7g0191061
rosa_laevigata	RLG00000004478
rosa_multiflora	Rmu_sc0000184.1_g000009 Rmu_sc0002080.1_g000014 Rmu_sc0005637.1_g000001 Rmu_sc0015000.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036890 Rroxscaffold_3G00264070
rosa_rugosa	Rorug06G0508300
rosa_samantha	Rh7AG115600 Rh7BG117900 Rh7BG118300 Rh7CG120800 Rh7CG186900 Rh7DG119300
rosa_wichuraiana	Rw2G007700 Rw7G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	184
AgsI	TTSAA	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	3 cut(s)	38, 53, 263
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
BmsI	GCATC	2 cut(s)	76, 271
BpmI	CTGGAG	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	79
Bse3DI	GCAATG	2 cut(s)	162, 213
BseGI	GGATG	1 cut(s)	67
BseMI	GCAATG	2 cut(s)	162, 213
BseNI	ACTGG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	210
Bsp143I	GATC	3 cut(s)	55, 96, 193
BspACI	CCGC	1 cut(s)	235
BsrDI	GCAATG	2 cut(s)	162, 213
BsrI	ACTGG	1 cut(s)	79
BssMI	GATC	3 cut(s)	55, 96, 193
Bst4CI	ACNGT	1 cut(s)	181
BstBAI	YACGTR	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	3 cut(s)	58, 99, 196
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	3 cut(s)	55, 96, 193
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 173
BstV1I	GCAGC	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	186
CfoI	GCGC	1 cut(s)	176
CviAII	CATG	1 cut(s)	88
DpnI	GATC	3 cut(s)	57, 98, 195
DpnII	GATC	3 cut(s)	55, 96, 193
FaeI	CATG	1 cut(s)	91
FaiI	YATR	1 cut(s)	89
FatI	CATG	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	3 cut(s)	38, 53, 263
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	218
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HinfI	GANTC	1 cut(s)	128
HphI	GGTGA	1 cut(s)	172
Hpy188I	TCNGA	1 cut(s)	101
Hpy188III	TCNNGA	3 cut(s)	197, 263, 278
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	2 cut(s)	67, 218
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 173
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	1 cut(s)	174
Kzo9I	GATC	3 cut(s)	55, 96, 193
LpnPI	CCDG	4 cut(s)	15, 92, 182, 291
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	2 cut(s)	76, 271
MaeI	CTAG	3 cut(s)	38, 53, 263
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	57, 98, 195
MboI	GATC	3 cut(s)	55, 96, 193
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	3 cut(s)	119, 184, 271
MnlI	CCTC	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	49, 173
NdeII	GATC	3 cut(s)	55, 96, 193
NlaIII	CATG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	220
Ppu21I	YACGTR	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	55
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	3 cut(s)	55, 96, 193
SetI	ASST	1 cut(s)	24
SfaNI	GCATC	2 cut(s)	76, 271
Sse9I	AATT	3 cut(s)	119, 184, 271
SsiI	CCGC	1 cut(s)	235
SspMI	CTAG	3 cut(s)	38, 53, 263
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	24
TasI	AATT	3 cut(s)	119, 184, 271
TfiI	GAWTC	1 cut(s)	128
TscAI	CASTG	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	3 cut(s)	178, 202, 284
TspRI	CASTG	1 cut(s)	186
XapI	RAATTY	1 cut(s)	184
XbaI	TCTAGA	1 cut(s)	262
XspI	CTAG	3 cut(s)	38, 53, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.