Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005007

Physical Location & Seq

Genomic Coordinates Reverse (-)

7547936 .. 7548694

Gene Structure 759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G007700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGACTTGGTGTTCTATACGCTGCAGCTTGGTTTCTTTTACATGGATTTTGACCTCATTTCTAAGAGCATTGAGAAAGCGAAAAATTTATTTGAAGAGGGAGGTGATTGGGAAAGGAAGAATCGTTTGAAGGTATATGAAGGCTTGTACTGCATGTCCACCCGAAATTTTAAGAAGGCAGCCGATTTGTTCCTGGATTCTATTTCTACCTTCACCACTTACGAAATATTTCCCTATGACATCTTCATATTTTATACCGTCCTGACAAGCATTATATCTTTGGACAGAGTTTCTTTAAAACAGAAGGTGGTGGATGCTCCAGAGATACTAACGGTTATTGGGAAAATCCCGTACTTGTCTGAGTTTTTGAACTCTCTTTATGATTGTCAGTACAAGTCATTCTTCGCAGCATTTGCTGGTCTGACAGAGCAGATAAAGCTGGATCGTTATTTGCATCCACACTCCCGGTATTACATGAGGGAAATCAAAACCGTTGTTTATTCTCAATTTTTGGAGTCCTACAAGAGTGTCACTATTGAAGCAATGGCAAAGGCATTTGGCGTGACAGTGGATTTCATTGATCTGGAGCTGTCTCGGTTCATTGCAGCAGGGAAACTCCACTGCAAGATAGATAAAGTTTCAGGTGTTCTAGAAACTAATCGTCCGGATGCCAAGAATTCTCTGTATCAGGCAACTATCAAGCAAGGGGACTTCCTACTGAACAGGATCCAGAAGTTGTCGCGTGTGATTGATCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03050 ko04066 ko05010 ko05169 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03050 map04066 map05010 map05169

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

252

Amino Acids

29.29

Weight (kDa)

7.62

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN7	PF10602	1 - 102	1.7e-39	26S proteasome subunit RPN7
PCI	PF01399	143 - 220	7.1e-18	PCI domain
RPN7_PSMD6_C	PF21154	229 - 250	4.5e-13	26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24820 AT4G24820
fragaria_vesca	FvH4_3g25540
malus_domestica	MD06G1151500.v1.1 MD06G1156100.v1.1 MD14G1163300.v1.1
prunus_persica	Prupe.5G156700_v2.0.a1
pyrus_communis	pycom06g13920 pycom14g13590
rosa_chinensis	RchiOBHm_Chr5g0017921 RchiOBHm_Chr5g0044171 RchiOBHm_Chr5g0065961 RchiOBHm_Chr7g0191031 RchiOBHm_Chr7g0191061
rosa_laevigata	RLG00000004478
rosa_multiflora	Rmu_sc0000184.1_g000009 Rmu_sc0002080.1_g000014 Rmu_sc0005637.1_g000001 Rmu_sc0015000.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036890 Rroxscaffold_3G00264070
rosa_rugosa	Rorug06G0508300
rosa_samantha	Rh7AG115600 Rh7BG117900 Rh7BG118300 Rh7CG120800 Rh7CG186900 Rh7DG119300
rosa_wichuraiana	Rw2G007700 Rw7G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	742
AccIII	TCCGGA	1 cut(s)	664
AclWI	GGATC	3 cut(s)	450, 721, 734
AcsI	RAATTY	3 cut(s)	85, 166, 676
AfaI	GTAC	3 cut(s)	149, 353, 392
AgsI	TTSAA	4 cut(s)	95, 130, 370, 539
AjnI	CCWGG	1 cut(s)	192
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	3 cut(s)	28, 439, 589
AluI	AGCT	3 cut(s)	28, 439, 589
Alw26I	GTCTC	1 cut(s)	597
AlwI	GGATC	3 cut(s)	450, 721, 734
Aor13HI	TCCGGA	1 cut(s)	664
ApeKI	GCWGC	5 cut(s)	22, 25, 179, 407, 605
ApoI	RAATTY	3 cut(s)	85, 166, 676
Asp700I	GAANNNNTTC	1 cut(s)	228
AsuC2I	CCSGG	1 cut(s)	466
AsuHPI	GGTGA	2 cut(s)	116, 205
BamHI	GGATCC	1 cut(s)	726
BbvI	GCAGC	5 cut(s)	9, 37, 191, 419, 617
BciT130I	CCWGG	1 cut(s)	194
BcnI	CCSGG	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	597
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	2 cut(s)	23, 755
BisI	GCNGC	5 cut(s)	23, 26, 180, 408, 606
BlsI	GCNGC	5 cut(s)	24, 27, 181, 409, 607
Bme1390I	CCNGG	2 cut(s)	194, 466
BmiI	GGNNCC	1 cut(s)	728
BmrFI	CCNGG	2 cut(s)	194, 466
BmsI	GCATC	3 cut(s)	304, 463, 658
BpmI	CTGGAG	2 cut(s)	303, 605
BpuMI	CCSGG	1 cut(s)	466
BsaWI	WCCGGW	1 cut(s)	664
Bse3DI	GCAATG	2 cut(s)	549, 600
BseAI	TCCGGA	1 cut(s)	664
BseBI	CCWGG	1 cut(s)	194
BseGI	GGATG	3 cut(s)	319, 454, 673
BseMI	GCAATG	2 cut(s)	549, 600
BseMII	CTCAG	1 cut(s)	351
BseXI	GCAGC	5 cut(s)	9, 37, 191, 419, 617
Bsh1236I	CGCG	1 cut(s)	742
BsiSI	CCGG	2 cut(s)	466, 665
BslFI	GGGAC	1 cut(s)	722
BsmAI	GTCTC	1 cut(s)	597
BsmFI	GGGAC	1 cut(s)	722
Bsp13I	TCCGGA	1 cut(s)	664
Bsp143I	GATC	4 cut(s)	442, 580, 726, 751
BspCNI	CTCAG	1 cut(s)	352
BspEI	TCCGGA	1 cut(s)	664
BspFNI	CGCG	1 cut(s)	742
BspLI	GGNNCC	1 cut(s)	728
BspMAI	CTGCAG	1 cut(s)	27
BspPI	GGATC	3 cut(s)	450, 721, 734
BsrDI	GCAATG	2 cut(s)	549, 600
BssMI	GATC	4 cut(s)	442, 580, 726, 751
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	4 cut(s)	259, 334, 493, 568
Bst6I	CTCTTC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstDEI	CTNAG	2 cut(s)	63, 360
BstF5I	GGATG	3 cut(s)	319, 454, 673
BstFNI	CGCG	1 cut(s)	742
BstKTI	GATC	4 cut(s)	445, 583, 729, 754
BstMAI	GTCTC	1 cut(s)	597
BstMBI	GATC	4 cut(s)	442, 580, 726, 751
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 413, 436
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	2 cut(s)	192, 464
BstSFI	CTRYAG	2 cut(s)	23, 755
BstUI	CGCG	1 cut(s)	742
BstV1I	GCAGC	5 cut(s)	9, 37, 191, 419, 617
BstX2I	RGATCY	1 cut(s)	726
BstYI	RGATCY	1 cut(s)	726
BtsCI	GGATG	3 cut(s)	319, 454, 673
BtsI	GCAGTG	1 cut(s)	619
BtsIMutI	CAGTG	2 cut(s)	573, 619
Csp6I	GTAC	3 cut(s)	148, 352, 391
CviAII	CATG	3 cut(s)	43, 154, 475
CviJI	RGCY	5 cut(s)	28, 144, 182, 439, 589
CviKI_1	RGCY	5 cut(s)	28, 144, 182, 439, 589
CviQI	GTAC	3 cut(s)	148, 352, 391
DdeI	CTNAG	2 cut(s)	63, 360
DpnI	GATC	4 cut(s)	444, 582, 728, 753
DpnII	GATC	4 cut(s)	442, 580, 726, 751
DraI	TTTAAA	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
EcoRI	GAATTC	1 cut(s)	676
EcoRII	CCWGG	1 cut(s)	192
FaeI	CATG	3 cut(s)	46, 157, 478
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	3 cut(s)	42, 153, 474
Fnu4HI	GCNGC	5 cut(s)	23, 26, 180, 408, 606
FokI	GGATG	3 cut(s)	326, 441, 680
Fsp4HI	GCNGC	5 cut(s)	23, 26, 180, 408, 606
FspBI	CTAG	1 cut(s)	650
GluI	GCNGC	5 cut(s)	23, 26, 180, 408, 606
GsuI	CTGGAG	2 cut(s)	303, 605
HapII	CCGG	2 cut(s)	466, 665
Hin1II	CATG	3 cut(s)	46, 157, 478
HinfI	GANTC	3 cut(s)	121, 197, 515
HpaII	CCGG	2 cut(s)	466, 665
HphI	GGTGA	2 cut(s)	116, 205
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	2 cut(s)	361, 423
Hpy188III	TCNNGA	6 cut(s)	262, 320, 584, 650, 665, 730
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	5 cut(s)	124, 134, 169, 220, 298
HpyCH4III	ACNGT	4 cut(s)	259, 334, 493, 568
HpyCH4V	TGCA	5 cut(s)	25, 153, 454, 605, 624
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 413, 436
HpyF3I	CTNAG	2 cut(s)	63, 360
Hsp92II	CATG	3 cut(s)	46, 157, 478
Kpn2I	TCCGGA	1 cut(s)	664
Kzo9I	GATC	4 cut(s)	442, 580, 726, 751
LmnI	GCTCC	2 cut(s)	322, 586
Lsp1109I	GCAGC	5 cut(s)	9, 37, 191, 419, 617
LweI	GCATC	3 cut(s)	304, 463, 658
MaeI	CTAG	1 cut(s)	650
MaeIII	GTNAC	2 cut(s)	529, 562
MalI	GATC	4 cut(s)	444, 582, 728, 753
MboI	GATC	4 cut(s)	442, 580, 726, 751
MboII	GAAGA	4 cut(s)	107, 130, 235, 394
MflI	RGATCY	1 cut(s)	726
MluCI	AATT	4 cut(s)	85, 166, 506, 676
MlyI	GAGTC	1 cut(s)	524
MnlI	CCTC	4 cut(s)	65, 91, 95, 471
MroI	TCCGGA	1 cut(s)	664
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	2 cut(s)	171, 296
MspI	CCGG	2 cut(s)	466, 665
MspR9I	CCNGG	2 cut(s)	194, 466
MvaI	CCWGG	1 cut(s)	194
MvnI	CGCG	1 cut(s)	742
MwoI	GCNNNNNNNGC	3 cut(s)	150, 413, 436
NciI	CCSGG	1 cut(s)	466
NdeII	GATC	4 cut(s)	442, 580, 726, 751
NlaIII	CATG	3 cut(s)	46, 157, 478
NlaIV	GGNNCC	1 cut(s)	728
NmuCI	GTSAC	2 cut(s)	529, 562
NspI	RCATGY	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	121, 197
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	5 cut(s)	24, 27, 181, 409, 607
PleI	GAGTC	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	728
PstI	CTGCAG	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	726
RsaI	GTAC	3 cut(s)	149, 353, 392
RsaNI	GTAC	3 cut(s)	148, 352, 391
SaqAI	TTAA	2 cut(s)	171, 296
SatI	GCNGC	5 cut(s)	23, 26, 180, 408, 606
Sau3AI	GATC	4 cut(s)	442, 580, 726, 751
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	2 cut(s)	194, 466
SetI	ASST	9 cut(s)	30, 57, 106, 135, 212, 309, 441, 591, 646
SfaNI	GCATC	3 cut(s)	304, 463, 658
SfcI	CTRYAG	2 cut(s)	23, 755
Sse9I	AATT	4 cut(s)	85, 166, 506, 676
SspI	AATATT	1 cut(s)	228
SspMI	CTAG	1 cut(s)	650
StyD4I	CCNGG	2 cut(s)	192, 464
TaaI	ACNGT	4 cut(s)	259, 334, 493, 568
TasI	AATT	4 cut(s)	85, 166, 506, 676
TatI	WGTACW	2 cut(s)	147, 390
TfiI	GAWTC	2 cut(s)	121, 197
Tru1I	TTAA	2 cut(s)	171, 296
Tru9I	TTAA	2 cut(s)	171, 296
TscAI	CASTG	2 cut(s)	573, 626
TseFI	GTSAC	2 cut(s)	529, 562
TseI	GCWGC	5 cut(s)	22, 25, 179, 407, 605
Tsp45I	GTSAC	2 cut(s)	529, 562
TspDTI	ATGAA	4 cut(s)	153, 235, 565, 589
TspRI	CASTG	2 cut(s)	573, 626
XapI	RAATTY	3 cut(s)	85, 166, 676
XbaI	TCTAGA	1 cut(s)	649
XceI	RCATGY	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.