FvH4_3g25540

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
18442424 .. 18445690
3267 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25540.t1

Sequence Viewer

Length: 1161 bp
ATGGAAGGTCAAGAAGAGACTCAGCAACCTCATCTCCAGCTCGCGAACAAGCTCTTCCTTCTCTCGCACCCAGACGTCCAAGACATCGACAAGGTCCGCCTCCGGGAGGAGGTTTTCGCCGCCGTAAAAGCCGACGATATGGCGCCCTTGTATGAAACCCTAGTTTCGGAATCGGTGCTGGAGATGGACCAGGGCCTTCTTGACTTCATGAAGACCAAGATCCAGGAGGAGCTCAAGAAGCTTGATGAAAAGATTGCTGATGCCGAGGAAAACTTGGGAGAAAGTGAGGTTAGAGAAGCTCATTTGGCCAAGTCCCTGTTTTTCATCCGTATTGGTGACAAGGAGAAAGCGTTGGAACAACTCAAGGTAACAGAAAGCAAGACAGTTGCAGTTGGGCAAAAGATGGACTTGGTGTTCTACACATTGCAGCTTGGTTTCTTTTACATGGATTTTGACCTCATTTCTAAGAGCATTGAGAAAGCAAAGAACTTATTTGAAGAGGGTGGTGATTGGGAAAGGAAGAATCGCTTGAAGGTATATGAAGGCTTGTACTGCATGTCCACTCGAAATTTTAAGAAGGCAGCCGATTTGTTCCTGGATTCCATATCTACTTTCACCACTTATGAGATATTTCCCTATGATATCTTCATATTCTATACCGTCCTGACAAGCATTATATCTTTGGACAGAGTTTCTTTAAAGCAGAAGGTGGTGGATGCTCCAGAGATATTAACTGTGATTGGGAAAATCCCGTACTTGTCTGAGTTTTTGAACTCACTGTATGATTGTCAATACAAGTCATTTTTCGCAGCATTTGCTGGTCTGACTGAGCAGATAAAGTTGGATCGTTATTTGCATCCACACTTCCGTTACTACATGAGAGAGATCAGAACAGTTGTTTATTCTCAATTTTTGGAGTCCTACAAGAGTGTCACTATTGAAGCAATGGCTAAGGCATTTGGCGTAACTGTGGATTTCATTGATCTGGAGCTGTCTCGGTTCATTGCAGCAGGGAAACTCCACTGCAAGATAGATAAAGTTTCAGGTGTTCTAGAAACTAATCGTCCGGATGCCAAGAATTCTCTGTATCAGGCAACTATCAAGCAAGGGGACTTCCTATTGAACAGGATCCAGAAGTTGTCCCGTGTAATTGATCTTTAA

Protein Analysis

387

Amino Acids

44.59

Weight (kDa)

5.34

Isoelectric Point (pI)

31.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPN7 PF10602 63 - 236 1.9e-63 26S proteasome subunit RPN7
PCI PF01399 277 - 354 3.9e-18 PCI domain
RPN7_PSMD6_C PF21154 363 - 384 7.6e-13 26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 78
AccB1I GGYRCC 1 cut(s) 142
AccII CGCG 1 cut(s) 44
AccIII TCCGGA 1 cut(s) 1066
AciI CCGC 2 cut(s) 97, 120
AclWI GGATC 4 cut(s) 214, 852, 1123, 1136
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 2 cut(s) 568, 1078
AcyI GRCGYC 2 cut(s) 75, 143
AfaI GTAC 2 cut(s) 551, 755
AfiI CCNNNNNNNGG 4 cut(s) 103, 106, 109, 166
AgsI TTSAA 5 cut(s) 497, 532, 772, 941, 1123
AjnI CCWGG 3 cut(s) 189, 222, 594
AloI GAACNNNNNNTCC 2 cut(s) 398, 430
AluBI AGCT 7 cut(s) 40, 52, 232, 241, 299, 430, 991
AluI AGCT 7 cut(s) 40, 52, 232, 241, 299, 430, 991
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 2 cut(s) 11, 999
AlwI GGATC 4 cut(s) 214, 852, 1123, 1136
Aor13HI TCCGGA 1 cut(s) 1066
AoxI GGCC 2 cut(s) 193, 306
ApeKI GCWGC 4 cut(s) 427, 581, 809, 1007
ApoI RAATTY 2 cut(s) 568, 1078
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 3 cut(s) 94, 187, 193
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 3 cut(s) 347, 518, 607
AvaII GGWCC 2 cut(s) 94, 187
BalI TGGCCA 1 cut(s) 308
BamHI GGATCC 1 cut(s) 1128
BanI GGYRCC 1 cut(s) 142
BanII GRGCYC 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 4 cut(s) 439, 593, 821, 1019
BccI CCATC 2 cut(s) 178, 397
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 3 cut(s) 191, 224, 596
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 2 cut(s) 11, 999
BfaI CTAG 2 cut(s) 161, 1052
BfoI RGCGCY 1 cut(s) 146
BisI GCNGC 5 cut(s) 120, 428, 582, 810, 1008
BlsI GCNGC 5 cut(s) 121, 429, 583, 811, 1009
Bme1390I CCNGG 4 cut(s) 104, 191, 224, 596
Bme18I GGWCC 2 cut(s) 94, 187
BmgT120I GGNCC 3 cut(s) 94, 187, 193
BmiI GGNNCC 2 cut(s) 144, 1130
BmrFI CCNGG 4 cut(s) 104, 191, 224, 596
BmsI GCATC 4 cut(s) 250, 706, 865, 1060
BpiI GAAGAC 1 cut(s) 218
BpmI CTGGAG 4 cut(s) 20, 200, 705, 1007
Bpu10I CCTNAGC 1 cut(s) 951
BpuEI CTTGAG 2 cut(s) 218, 347
BpuMI CCSGG 1 cut(s) 104
BsaHI GRCGYC 2 cut(s) 75, 143
BsaJI CCNNGG 2 cut(s) 190, 264
BsaWI WCCGGW 1 cut(s) 1066
BsaXI ACNNNNNCTCC 4 cut(s) 18, 48, 335, 365
Bsc4I CCNNNNNNNGG 4 cut(s) 103, 106, 109, 166
Bse3DI GCAATG 3 cut(s) 422, 951, 1002
BseAI TCCGGA 1 cut(s) 1066
BseBI CCWGG 3 cut(s) 191, 224, 596
BseDI CCNNGG 2 cut(s) 190, 264
BseGI GGATG 4 cut(s) 324, 721, 856, 1075
BseLI CCNNNNNNNGG 4 cut(s) 103, 106, 109, 166
BseMI GCAATG 3 cut(s) 422, 951, 1002
BseMII CTCAG 3 cut(s) 35, 753, 819
BseRI GAGGAG 2 cut(s) 122, 242
BseXI GCAGC 4 cut(s) 439, 593, 821, 1019
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 2 cut(s) 195, 308
BshNI GGYRCC 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 2 cut(s) 103, 1067
BslFI GGGAC 3 cut(s) 298, 1124, 1126
BslI CCNNNNNNNGG 4 cut(s) 103, 106, 109, 166
BsmAI GTCTC 2 cut(s) 11, 999
BsmFI GGGAC 3 cut(s) 298, 1124, 1126
BsnI GGCC 2 cut(s) 195, 308
Bsp1286I GDGCHC 1 cut(s) 234
Bsp13I TCCGGA 1 cut(s) 1066
Bsp143I GATC 6 cut(s) 219, 844, 885, 982, 1128, 1153
Bsp68I TCGCGA 1 cut(s) 44
BspACI CCGC 2 cut(s) 97, 120
BspANI GGCC 2 cut(s) 195, 308
BspCNI CTCAG 3 cut(s) 34, 754, 820
BspEI TCCGGA 1 cut(s) 1066
BspFNI CGCG 1 cut(s) 44
BspHI TCATGA 1 cut(s) 207
BspLI GGNNCC 2 cut(s) 144, 1130
BspPI GGATC 4 cut(s) 214, 852, 1123, 1136
BspQI GCTCTTC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 142
BsrDI GCAATG 3 cut(s) 422, 951, 1002
BssECI CCNNGG 2 cut(s) 190, 264
BssMI GATC 6 cut(s) 219, 844, 885, 982, 1128, 1153
BssNI GRCGYC 2 cut(s) 75, 143
Bst2UI CCWGG 3 cut(s) 191, 224, 596
Bst4CI ACNGT 6 cut(s) 385, 661, 736, 780, 895, 970
Bst6I CTCTTC 3 cut(s) 9, 59, 492
BstACI GRCGYC 2 cut(s) 75, 143
BstAPI GCANNNNNTGC 1 cut(s) 815
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 5 cut(s) 21, 465, 762, 828, 951
BstENI CCTNNNNNAGG 1 cut(s) 104
BstF5I GGATG 4 cut(s) 324, 721, 856, 1075
BstFNI CGCG 1 cut(s) 44
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 6 cut(s) 222, 847, 888, 985, 1131, 1156
BstMAI GTCTC 2 cut(s) 11, 999
BstMBI GATC 6 cut(s) 219, 844, 885, 982, 1128, 1153
BstMWI GCNNNNNNNGC 5 cut(s) 128, 238, 305, 552, 815
BstNI CCWGG 3 cut(s) 191, 224, 596
BstNSI RCATGY 1 cut(s) 559
BstSCI CCNGG 4 cut(s) 102, 189, 222, 594
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 4 cut(s) 439, 593, 821, 1019
BstV2I GAAGAC 1 cut(s) 218
BstX2I RGATCY 2 cut(s) 219, 1128
BstYI RGATCY 2 cut(s) 219, 1128
BsuRI GGCC 2 cut(s) 195, 308
BtsCI GGATG 4 cut(s) 324, 721, 856, 1075
BtsI GCAGTG 1 cut(s) 1021
BtsIMutI CAGTG 2 cut(s) 776, 1021
BtuMI TCGCGA 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 42
CciI TCATGA 1 cut(s) 207
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 3 cut(s) 94, 187, 193
Csp6I GTAC 2 cut(s) 550, 754
CviAII CATG 4 cut(s) 208, 445, 556, 877
CviQI GTAC 2 cut(s) 550, 754
DdeI CTNAG 5 cut(s) 21, 465, 762, 828, 951
DinI GGCGCC 1 cut(s) 144
DpnI GATC 6 cut(s) 221, 846, 887, 984, 1130, 1155
DpnII GATC 6 cut(s) 219, 844, 885, 982, 1128, 1153
DraI TTTAAA 1 cut(s) 699
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 3 cut(s) 9, 59, 492
EarI CTCTTC 3 cut(s) 9, 59, 492
EciI GGCGGA 1 cut(s) 86
Ecl136II GAGCTC 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 234
Eco32I GATATC 1 cut(s) 643
Eco47I GGWCC 2 cut(s) 94, 187
Eco53kI GAGCTC 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 232
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 193
EcoRI GAATTC 1 cut(s) 1078
EcoRII CCWGG 3 cut(s) 189, 222, 594
EcoRV GATATC 1 cut(s) 643
EcoT38I GRGCYC 1 cut(s) 234
EgeI GGCGCC 1 cut(s) 144
EheI GGCGCC 1 cut(s) 144
FaeI CATG 4 cut(s) 211, 448, 559, 880
FalI AAGNNNNNCTT 4 cut(s) 392, 424, 512, 544
FaqI GGGAC 3 cut(s) 298, 1124, 1126
FatI CATG 4 cut(s) 207, 444, 555, 876
Fnu4HI GCNGC 5 cut(s) 120, 428, 582, 810, 1008
FokI GGATG 4 cut(s) 311, 728, 843, 1082
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 5 cut(s) 120, 428, 582, 810, 1008
FspBI CTAG 2 cut(s) 161, 1052
GlaI GCGC 1 cut(s) 144
GluI GCNGC 5 cut(s) 120, 428, 582, 810, 1008
GsuI CTGGAG 4 cut(s) 20, 200, 705, 1007
HaeII RGCGCY 1 cut(s) 146
HaeIII GGCC 2 cut(s) 195, 308
HapII CCGG 2 cut(s) 103, 1067
HhaI GCGC 1 cut(s) 145
Hin1I GRCGYC 2 cut(s) 75, 143
Hin1II CATG 4 cut(s) 211, 448, 559, 880
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 5 cut(s) 19, 170, 523, 599, 917
HpaII CCGG 2 cut(s) 103, 1067
HphI GGTGA 3 cut(s) 347, 518, 607
Hpy166II GTNNAC 1 cut(s) 561
Hpy188I TCNGA 4 cut(s) 169, 763, 825, 890
Hpy8I GTNNAC 1 cut(s) 561
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 6 cut(s) 68, 206, 526, 536, 571, 700
HpyCH4III ACNGT 6 cut(s) 385, 661, 736, 780, 895, 970
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 6 cut(s) 389, 427, 555, 856, 1007, 1026
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 238, 305, 552, 815
HpyF3I CTNAG 5 cut(s) 21, 465, 762, 828, 951
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 2 cut(s) 75, 143
Hsp92II CATG 4 cut(s) 211, 448, 559, 880
HspAI GCGC 1 cut(s) 143
KasI GGCGCC 1 cut(s) 142
Kpn2I TCCGGA 1 cut(s) 1066
Kzo9I GATC 6 cut(s) 219, 844, 885, 982, 1128, 1153
LguI GCTCTTC 1 cut(s) 59
LmnI GCTCC 3 cut(s) 229, 724, 988
Lsp1109I GCAGC 4 cut(s) 439, 593, 821, 1019
LweI GCATC 4 cut(s) 250, 706, 865, 1060
MaeI CTAG 2 cut(s) 161, 1052
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 5 cut(s) 335, 367, 869, 931, 964
MalI GATC 6 cut(s) 221, 846, 887, 984, 1130, 1155
MboI GATC 6 cut(s) 219, 844, 885, 982, 1128, 1153
MboII GAAGA 6 cut(s) 26, 46, 223, 509, 532, 637
MflI RGATCY 2 cut(s) 219, 1128
MhlI GDGCHC 1 cut(s) 234
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 4 cut(s) 568, 908, 1078, 1149
MluNI TGGCCA 1 cut(s) 308
Mly113I GGCGCC 1 cut(s) 143
MlyI GAGTC 2 cut(s) 13, 926
MmeI TCCRAC 2 cut(s) 333, 822
MnlI CCTC 9 cut(s) 39, 100, 103, 110, 220, 259, 280, 467, 493
Mox20I TGGCCA 1 cut(s) 308
MroI TCCGGA 1 cut(s) 1066
MscI TGGCCA 1 cut(s) 308
MseI TTAA 4 cut(s) 573, 698, 731, 1159
Msp20I TGGCCA 1 cut(s) 308
MspI CCGG 2 cut(s) 103, 1067
MspR9I CCNGG 4 cut(s) 104, 191, 224, 596
MvaI CCWGG 3 cut(s) 191, 224, 596
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 5 cut(s) 128, 238, 305, 552, 815
NarI GGCGCC 1 cut(s) 143
NciI CCSGG 1 cut(s) 104
NdeII GATC 6 cut(s) 219, 844, 885, 982, 1128, 1153
NlaIII CATG 4 cut(s) 211, 448, 559, 880
NlaIV GGNNCC 2 cut(s) 144, 1130
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 2 cut(s) 335, 931
NruI TCGCGA 1 cut(s) 44
NspI RCATGY 1 cut(s) 559
PagI TCATGA 1 cut(s) 207
PciSI GCTCTTC 1 cut(s) 59
PfeI GAWTC 3 cut(s) 170, 523, 599
PflFI GACNNNGTC 1 cut(s) 92
PfoI TCCNGGA 3 cut(s) 102, 222, 594
PkrI GCNGC 5 cut(s) 121, 429, 583, 811, 1009
PleI GAGTC 2 cut(s) 13, 925
PluTI GGCGCC 1 cut(s) 146
PpsI GAGTC 2 cut(s) 13, 925
Psp124BI GAGCTC 1 cut(s) 234
Psp6I CCWGG 3 cut(s) 189, 222, 594
PspGI CCWGG 3 cut(s) 189, 222, 594
PspN4I GGNNCC 2 cut(s) 144, 1130
PspPI GGNCC 3 cut(s) 94, 187, 193
PsuI RGATCY 2 cut(s) 219, 1128
PsyI GACNNNGTC 1 cut(s) 92
RruI TCGCGA 1 cut(s) 44
RsaI GTAC 2 cut(s) 551, 755
RsaNI GTAC 2 cut(s) 550, 754
SacI GAGCTC 1 cut(s) 234
SapI GCTCTTC 1 cut(s) 59
SaqAI TTAA 4 cut(s) 573, 698, 731, 1159
SatI GCNGC 5 cut(s) 120, 428, 582, 810, 1008
Sau3AI GATC 6 cut(s) 219, 844, 885, 982, 1128, 1153
Sau96I GGNCC 3 cut(s) 94, 187, 193
SchI GAGTC 2 cut(s) 13, 926
ScrFI CCNGG 4 cut(s) 104, 191, 224, 596
SduI GDGCHC 1 cut(s) 234
SfaNI GCATC 4 cut(s) 250, 706, 865, 1060
SfoI GGCGCC 1 cut(s) 144
SinI GGWCC 2 cut(s) 94, 187
SmlI CTYRAG 2 cut(s) 233, 362
SmoI CTYRAG 2 cut(s) 233, 362
Sse9I AATT 4 cut(s) 568, 908, 1078, 1149
SsiI CCGC 2 cut(s) 97, 120
SspDI GGCGCC 1 cut(s) 142
SspMI CTAG 2 cut(s) 161, 1052
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 4 cut(s) 102, 189, 222, 594
TaaI ACNGT 6 cut(s) 385, 661, 736, 780, 895, 970
TaiI ACGT 1 cut(s) 78
TaqI TCGA 2 cut(s) 87, 565
TasI AATT 4 cut(s) 568, 908, 1078, 1149
TatI WGTACW 1 cut(s) 549
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 3 cut(s) 170, 523, 599
Tru1I TTAA 4 cut(s) 573, 698, 731, 1159
Tru9I TTAA 4 cut(s) 573, 698, 731, 1159
TscAI CASTG 2 cut(s) 783, 1028
TseFI GTSAC 2 cut(s) 335, 931
TseI GCWGC 4 cut(s) 427, 581, 809, 1007
Tsp45I GTSAC 2 cut(s) 335, 931
TspDTI ATGAA 9 cut(s) 168, 196, 224, 261, 313, 555, 637, 967, 991
TspGWI ACGGA 2 cut(s) 317, 857
TspRI CASTG 2 cut(s) 783, 1028
Tth111I GACNNNGTC 1 cut(s) 92
VpaK11BI GGWCC 2 cut(s) 94, 187
XagI CCTNNNNNAGG 1 cut(s) 104
XapI RAATTY 2 cut(s) 568, 1078
XbaI TCTAGA 1 cut(s) 1051
XceI RCATGY 1 cut(s) 559
XspI CTAG 2 cut(s) 161, 1052
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.