Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004776

Physical Location & Seq

Genomic Coordinates Forward (+)

12916926 .. 12918110

Gene Structure 1185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCATCTGCTCTCGCTCTTAAGAGACTCCTATCATCCTCCATCGCTCCACGTTCCCGTAGTGTTCTTCGTCCAGCTGTTTCCTCTCGCCTCTTCAACACCAACGCCGTTAGGAGCTACGACGACGACGGCGAAAATGGAGACGGCGTTGATTTATATCGCCGCTCTGTTCCTCGCCGCCGTGGTGATTTCTTCTCAGATGTGTTTGATCCGTTTTCGCCGACGAGGAGCGTTAGTCAAGTGCTGAATCTGATGGACCAGTTCATGGAGAATCCTCTGTTATCAGCTACTCGTGGCATGGGAGCTTCAGGAGCTCGTCGTGGTTGGGATATAAAAGAGAAAGACGATGCTCTGTACCTGAGAATCGACATGCCTGGGCTGAGCAGAGAGGATGTGAAGCTGGCTTTGGAGCAGGACACTCTGGTGATTAGAGGAGAAGGAAAAAACGAGGAAGATGGTGGCGAGGAAGGAGAGAGCGGTAATCGGAGATTCACAAGCAGGATTGGATTACCGGATAAGATTTACAAGATCGATGAGATTAAGGCGGAGATGAAGAACGGAGTGTTGAAAGTTGTGATCCCGAAGATGAAAGAACAAGAGAGAAATGATGTTCGTCAGATCGAGATCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0010035 GO:0010038 GO:0042221 GO:0046686 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

210

Amino Acids

23.61

Weight (kDa)

6.46

Isoelectric Point (pI)

58.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	110 - 210	4e-20	Hsp20/alpha crystallin family
ArsA_HSP20	PF17886	116 - 191	5.3e-08	HSP20-like domain found in ArsA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25200 AT5G51440
fragaria_vesca	FvH4_5g18720 FvH4_5g18720 FvH4_7g27540
malus_domestica	MD06G1060300.v1.1 MD07G1253800.v1.1
prunus_persica	Prupe.5G071200_v2.0.a1
pyrus_communis	pycom06g04980
rosa_chinensis	RchiOBHm_Chr1g0374411 RchiOBHm_Chr7g0203041
rosa_laevigata	RLG00000003557 RLG00000026740
rosa_multiflora	Rmu_co7998068.1_g000001 Rmu_sc0004999.1_g000002 Rmu_sc0006877.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254100 Rroxscaffold_4G00283520
rosa_rugosa	Rorug05G0394700 Rorug07G0074200 Rorug07G0285900
rosa_samantha	Rh1AG393600 Rh1BG357900 Rh1DG388800 Rh7AG202800 Rh7BG202600 Rh7CG213600 Rh7DG209800
rosa_wichuraiana	Rw1G034130 Rw1G034250 Rw7G017710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccBSI	CCGCTC	2 cut(s)	165, 477
AciI	CCGC	4 cut(s)	163, 178, 477, 545
AclWI	GGATC	2 cut(s)	203, 571
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	265
AflII	CTTAAG	1 cut(s)	20
AgsI	TTSAA	2 cut(s)	97, 568
AjnI	CCWGG	1 cut(s)	373
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AleI	CACNNNNGTG	1 cut(s)	422
AluBI	AGCT	6 cut(s)	77, 117, 287, 305, 314, 400
AluI	AGCT	6 cut(s)	77, 117, 287, 305, 314, 400
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	2 cut(s)	19, 135
AlwI	GGATC	2 cut(s)	203, 571
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	2 cut(s)	197, 436
AvaII	GGWCC	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	316
BauI	CACGAG	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	316
BccI	CCATC	3 cut(s)	50, 247, 449
BceAI	ACGGC	4 cut(s)	92, 145, 160, 165
BciT130I	CCWGG	1 cut(s)	375
BcoDI	GTCTC	2 cut(s)	19, 135
BfrI	CTTAAG	1 cut(s)	20
BisI	GCNGC	2 cut(s)	163, 178
BlpI	GCTNAGC	1 cut(s)	380
BlsI	GCNGC	2 cut(s)	164, 179
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	2 cut(s)	14, 337
Bpu1102I	GCTNAGC	1 cut(s)	380
Bsa29I	ATCGAT	1 cut(s)	531
BsaBI	GATNNNNATC	2 cut(s)	156, 623
BsaJI	CCNNGG	2 cut(s)	181, 374
BsaWI	WCCGGW	1 cut(s)	511
BsaXI	ACNNNNNCTCC	4 cut(s)	132, 162, 220, 250
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	259
Bse8I	GATNNNNATC	2 cut(s)	156, 623
BseBI	CCWGG	1 cut(s)	375
BseCI	ATCGAT	1 cut(s)	531
BseDI	CCNNGG	2 cut(s)	181, 374
BseGI	GGATG	2 cut(s)	35, 397
BseJI	GATNNNNATC	2 cut(s)	156, 623
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	3 cut(s)	210, 350, 371
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	2 cut(s)	241, 447
BshVI	ATCGAT	1 cut(s)	531
BsiHKAI	GWGCWC	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	512
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	2 cut(s)	19, 135
BsmBI	CGTCTC	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	5 cut(s)	208, 528, 576, 618, 624
Bsp1720I	GCTNAGC	1 cut(s)	380
BspACI	CCGC	4 cut(s)	163, 178, 477, 545
BspCNI	CTCAG	3 cut(s)	209, 351, 372
BspDI	ATCGAT	1 cut(s)	531
BspPI	GGATC	2 cut(s)	203, 571
BspTI	CTTAAG	1 cut(s)	20
BsrBI	CCGCTC	2 cut(s)	165, 477
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	2 cut(s)	181, 374
BssMI	GATC	5 cut(s)	208, 528, 576, 618, 624
BssSI	CACGAG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	375
Bst6I	CTCTTC	1 cut(s)	98
BstAFI	CTTAAG	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	3 cut(s)	196, 359, 380
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	2 cut(s)	35, 397
BstKTI	GATC	5 cut(s)	211, 531, 579, 621, 627
BstMAI	GTCTC	2 cut(s)	19, 135
BstMBI	GATC	5 cut(s)	208, 528, 576, 618, 624
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	1 cut(s)	375
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	373
Bsu15I	ATCGAT	1 cut(s)	531
BsuTUI	ATCGAT	1 cut(s)	531
BtgI	CCRYGG	1 cut(s)	181
BtgZI	GCGATG	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	35, 397
Cac8I	GCNNGC	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	256
ClaI	ATCGAT	1 cut(s)	531
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	3 cut(s)	265, 298, 370
CviJI	RGCY	8 cut(s)	77, 117, 287, 305, 314, 379, 400, 404
CviKI_1	RGCY	8 cut(s)	77, 117, 287, 305, 314, 379, 400, 404
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	3 cut(s)	196, 359, 380
DpnI	GATC	5 cut(s)	210, 530, 578, 620, 626
DpnII	GATC	5 cut(s)	208, 528, 576, 618, 624
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	560
Ecl136II	GAGCTC	1 cut(s)	314
Eco24I	GRGCYC	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	291
EcoICRI	GAGCTC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	316
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	3 cut(s)	268, 301, 373
FaiI	YATR	5 cut(s)	157, 266, 299, 332, 371
FatI	CATG	3 cut(s)	264, 297, 369
Fnu4HI	GCNGC	2 cut(s)	163, 178
FokI	GGATG	2 cut(s)	22, 404
FriOI	GRGCYC	1 cut(s)	316
Fsp4HI	GCNGC	2 cut(s)	163, 178
GluI	GCNGC	2 cut(s)	163, 178
HapII	CCGG	1 cut(s)	512
Hin1II	CATG	3 cut(s)	268, 301, 373
HinfI	GANTC	5 cut(s)	27, 247, 271, 363, 489
HpaII	CCGG	1 cut(s)	512
HphI	GGTGA	2 cut(s)	197, 436
Hpy188I	TCNGA	4 cut(s)	199, 252, 486, 618
Hpy188III	TCNNGA	3 cut(s)	309, 580, 622
Hpy99I	CGWCG	5 cut(s)	125, 128, 131, 226, 321
HpyAV	CCTTC	2 cut(s)	431, 461
HpyCH4IV	ACGT	1 cut(s)	52
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	3 cut(s)	196, 359, 380
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	3 cut(s)	268, 301, 373
Kzo9I	GATC	5 cut(s)	208, 528, 576, 618, 624
LmnI	GCTCC	6 cut(s)	52, 114, 228, 302, 311, 409
LweI	GCATC	2 cut(s)	14, 337
MaeII	ACGT	1 cut(s)	52
MalI	GATC	5 cut(s)	210, 530, 578, 620, 626
MbiI	CCGCTC	2 cut(s)	165, 477
MboI	GATC	5 cut(s)	208, 528, 576, 618, 624
MboII	GAAGA	6 cut(s)	59, 85, 184, 464, 565, 595
MhlI	GDGCHC	1 cut(s)	316
MlyI	GAGTC	1 cut(s)	21
MseI	TTAA	2 cut(s)	21, 540
MslI	CAYNNNNRTG	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	77
MspCI	CTTAAG	1 cut(s)	20
MspI	CCGG	1 cut(s)	512
MspR9I	CCNGG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	1 cut(s)	311
NdeII	GATC	5 cut(s)	208, 528, 576, 618, 624
NlaIII	CATG	3 cut(s)	268, 301, 373
NspI	RCATGY	1 cut(s)	373
OliI	CACNNNNGTG	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	4 cut(s)	247, 271, 363, 489
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	2 cut(s)	164, 179
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspPI	GGNCC	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	422
SacI	GAGCTC	1 cut(s)	316
SaqAI	TTAA	2 cut(s)	21, 540
SatI	GCNGC	2 cut(s)	163, 178
Sau3AI	GATC	5 cut(s)	208, 528, 576, 618, 624
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	21
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	8 cut(s)	55, 79, 119, 289, 307, 316, 360, 402
SfaNI	GCATC	2 cut(s)	14, 337
SinI	GGWCC	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
SsiI	CCGC	4 cut(s)	163, 178, 477, 545
SstI	GAGCTC	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	373
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	3 cut(s)	366, 531, 621
TauI	GCSGC	2 cut(s)	165, 180
TfiI	GAWTC	4 cut(s)	247, 271, 363, 489
Tru1I	TTAA	2 cut(s)	21, 540
Tru9I	TTAA	2 cut(s)	21, 540
TspDTI	ATGAA	3 cut(s)	253, 566, 602
TspGWI	ACGGA	2 cut(s)	201, 573
Van91I	CCANNNNNTGG	1 cut(s)	265
Vha464I	CTTAAG	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	256
XceI	RCATGY	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.