Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004776

Physical Location & Seq

Genomic Coordinates Reverse (-)

18746917 .. 18747903

Gene Structure 987 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G017710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCTTCGTCAATCTCAATCGCTCTCAGAAGGGCCTCATCCCCAAGCCTCTTCTCCAAGCTCTTCAACCCTCTTCGCTCTGTTTCAGTAGCTCCCTCTGTTTCTCGCTCCTTCAACACCAACGCCCAGAGGACCAGCTACGATGACGATGACCAGAGCGTCTCCGTCGATCGCACCACCAGTAGCTCTCCCTCTCGCCGCCGTGACCCTATAGTCTCGGAGTCTTGCAAAAGTCTGAACCAGGTGCCAAGAAGTCTGAGCCAGGTCCTTAACTTGATGGACCAATTCATGGACAACCCATACCTGGCTGCGTCTCGAGGAGTCGGTGCAGCTGGATCAAGAAGAGGGTGGGACGTGAAGGAAAACGACGACGCATTGCTGCTGAGGATGGACATGCCAGGGCTGGACAAGGGGGACGTGAAGGTGTCTGTGGAGCAAAACACTCTGACTGTGAGAGGAGAAGGAAAGGAACTTGAGGATGAAGAAGAAGGAGGGAGGAGATTCTCTAGCCGATTGGATCTGCCTCCTAACCTTTATGAGCTCGATTCGATCAAGGCTGAAATGAAGAATGGGGTTCTCAAGGTGGTGGTTCCAAAGGTGAAAGAGGAGGAGAAGAAGAATGTGTATGAGGTGAACATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

214

Amino Acids

23.71

Weight (kDa)

5.48

Isoelectric Point (pI)

61.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	118 - 213	1.6e-19	Hsp20/alpha crystallin family
ArsA_HSP20	PF17886	124 - 195	1.3e-06	HSP20-like domain found in ArsA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25200 AT5G51440
fragaria_vesca	FvH4_5g18720 FvH4_5g18720 FvH4_7g27540
malus_domestica	MD06G1060300.v1.1 MD07G1253800.v1.1
prunus_persica	Prupe.5G071200_v2.0.a1
pyrus_communis	pycom06g04980
rosa_chinensis	RchiOBHm_Chr1g0374411 RchiOBHm_Chr7g0203041
rosa_laevigata	RLG00000003557 RLG00000026740
rosa_multiflora	Rmu_co7998068.1_g000001 Rmu_sc0004999.1_g000002 Rmu_sc0006877.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254100 Rroxscaffold_4G00283520
rosa_rugosa	Rorug05G0394700 Rorug07G0074200 Rorug07G0285900
rosa_samantha	Rh1AG393600 Rh1BG357900 Rh1DG388800 Rh7AG202800 Rh7BG202600 Rh7CG213600 Rh7DG209800
rosa_wichuraiana	Rw1G034130 Rw1G034250 Rw7G017710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	158, 212
AccB1I	GGYRCC	1 cut(s)	244
AccB7I	CCANNNNNTGG	1 cut(s)	289
AciI	CCGC	1 cut(s)	199
AclWI	GGATC	2 cut(s)	343, 525
AfiI	CCNNNNNNNGG	2 cut(s)	289, 304
AgsI	TTSAA	2 cut(s)	67, 115
AjiI	CACGTC	2 cut(s)	355, 418
AjnI	CCWGG	4 cut(s)	240, 261, 303, 397
AluBI	AGCT	6 cut(s)	61, 92, 138, 186, 332, 541
AluI	AGCT	6 cut(s)	61, 92, 138, 186, 332, 541
Alw21I	GWGCWC	1 cut(s)	543
Alw26I	GTCTC	3 cut(s)	166, 220, 318
AlwI	GGATC	2 cut(s)	343, 525
Ama87I	CYCGRG	1 cut(s)	315
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	3 cut(s)	308, 329, 379
AspS9I	GGNCC	4 cut(s)	33, 132, 265, 280
AsuHPI	GGTGA	2 cut(s)	610, 643
AvaI	CYCGRG	1 cut(s)	315
AvaII	GGWCC	3 cut(s)	132, 265, 280
BanI	GGYRCC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	543
Bbv12I	GWGCWC	1 cut(s)	543
BbvCI	CCTCAGC	1 cut(s)	383
BbvI	GCAGC	3 cut(s)	295, 341, 366
BccI	CCATC	2 cut(s)	271, 382
BceAI	ACGGC	1 cut(s)	186
BciT130I	CCWGG	4 cut(s)	242, 263, 305, 399
BcoDI	GTCTC	3 cut(s)	166, 220, 318
BfaI	CTAG	1 cut(s)	507
BfmI	CTRYAG	1 cut(s)	210
BisI	GCNGC	4 cut(s)	199, 309, 330, 380
BlsI	GCNGC	4 cut(s)	200, 310, 331, 381
Bme1390I	CCNGG	4 cut(s)	242, 263, 305, 399
Bme18I	GGWCC	3 cut(s)	132, 265, 280
BmeT110I	CYCGRG	1 cut(s)	315
BmgBI	CACGTC	2 cut(s)	355, 418
BmgT120I	GGNCC	4 cut(s)	33, 132, 265, 280
BmiI	GGNNCC	2 cut(s)	246, 591
BmrFI	CCNGG	4 cut(s)	242, 263, 305, 399
Bpu10I	CCTNAGC	1 cut(s)	383
BpuEI	CTTGAG	2 cut(s)	494, 563
BsaJI	CCNNGG	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 304
Bse1I	ACTGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	374
BseBI	CCWGG	4 cut(s)	242, 263, 305, 399
BseDI	CCNNGG	1 cut(s)	398
BseGI	GGATG	3 cut(s)	38, 393, 484
BseLI	CCNNNNNNNGG	2 cut(s)	289, 304
BseMI	GCAATG	1 cut(s)	374
BseMII	CTCAG	3 cut(s)	40, 248, 374
BseNI	ACTGG	1 cut(s)	180
BseRI	GAGGAG	5 cut(s)	333, 471, 511, 620, 623
BseXI	GCAGC	3 cut(s)	295, 341, 366
BsgI	GTGCAG	1 cut(s)	348
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	1 cut(s)	35
BshNI	GGYRCC	1 cut(s)	244
BsiEI	CGRYCG	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	543
BsiHKCI	CYCGRG	1 cut(s)	315
BslFI	GGGAC	2 cut(s)	365, 428
BslI	CCNNNNNNNGG	2 cut(s)	289, 304
BsmAI	GTCTC	3 cut(s)	166, 220, 318
BsmBI	CGTCTC	2 cut(s)	166, 318
BsmFI	GGGAC	2 cut(s)	365, 428
BsnI	GGCC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	315
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp143I	GATC	4 cut(s)	169, 335, 517, 549
BspACI	CCGC	1 cut(s)	199
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	3 cut(s)	39, 249, 375
BspLI	GGNNCC	2 cut(s)	246, 591
BspPI	GGATC	2 cut(s)	343, 525
BspQI	GCTCTTC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	398
BssMI	GATC	4 cut(s)	169, 335, 517, 549
Bst2UI	CCWGG	4 cut(s)	242, 263, 305, 399
Bst4CI	ACNGT	1 cut(s)	451
Bst6I	CTCTTC	4 cut(s)	56, 68, 78, 337
BstDEI	CTNAG	3 cut(s)	26, 257, 383
BstF5I	GGATG	3 cut(s)	38, 393, 484
BstKTI	GATC	4 cut(s)	172, 338, 520, 552
BstMAI	GTCTC	3 cut(s)	166, 220, 318
BstMBI	GATC	4 cut(s)	169, 335, 517, 549
BstMCI	CGRYCG	1 cut(s)	172
BstNI	CCWGG	4 cut(s)	242, 263, 305, 399
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	4 cut(s)	240, 261, 303, 397
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	3 cut(s)	295, 341, 366
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	1 cut(s)	35
BtrI	CACGTC	2 cut(s)	355, 418
BtsCI	GGATG	3 cut(s)	38, 393, 484
Cfr13I	GGNCC	4 cut(s)	33, 132, 265, 280
CseI	GACGC	3 cut(s)	148, 300, 380
CsiI	ACCWGGT	1 cut(s)	240
CviAII	CATG	2 cut(s)	289, 394
DdeI	CTNAG	3 cut(s)	26, 257, 383
DpnI	GATC	4 cut(s)	171, 337, 519, 551
DpnII	GATC	4 cut(s)	169, 335, 517, 549
DrdI	GACNNNNNNGTC	2 cut(s)	158, 212
DseDI	GACNNNNNNGTC	2 cut(s)	158, 212
Eam1104I	CTCTTC	4 cut(s)	56, 68, 78, 337
EarI	CTCTTC	4 cut(s)	56, 68, 78, 337
Ecl136II	GAGCTC	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	543
Eco47I	GGWCC	3 cut(s)	132, 265, 280
Eco53kI	GAGCTC	1 cut(s)	541
Eco88I	CYCGRG	1 cut(s)	315
EcoICRI	GAGCTC	1 cut(s)	541
EcoO109I	RGGNCCY	2 cut(s)	33, 265
EcoRII	CCWGG	4 cut(s)	240, 261, 303, 397
EcoT38I	GRGCYC	1 cut(s)	543
Esp3I	CGTCTC	2 cut(s)	166, 318
FaeI	CATG	2 cut(s)	292, 397
FaiI	YATR	6 cut(s)	212, 290, 301, 395, 537, 627
FaqI	GGGAC	2 cut(s)	365, 428
FatI	CATG	2 cut(s)	288, 393
Fnu4HI	GCNGC	4 cut(s)	199, 309, 330, 380
FokI	GGATG	3 cut(s)	25, 400, 491
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	4 cut(s)	199, 309, 330, 380
FspBI	CTAG	1 cut(s)	507
GluI	GCNGC	4 cut(s)	199, 309, 330, 380
HaeIII	GGCC	1 cut(s)	35
HgaI	GACGC	3 cut(s)	148, 300, 380
Hin1II	CATG	2 cut(s)	292, 397
HinfI	GANTC	4 cut(s)	221, 321, 501, 545
HphI	GGTGA	2 cut(s)	610, 643
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188I	TCNGA	5 cut(s)	29, 220, 237, 258, 447
Hpy188III	TCNNGA	2 cut(s)	315, 339
Hpy8I	GTNNAC	1 cut(s)	634
Hpy99I	CGWCG	3 cut(s)	170, 371, 374
HpyAV	CCTTC	6 cut(s)	24, 121, 352, 415, 455, 482
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4IV	ACGT	2 cut(s)	354, 417
HpyCH4V	TGCA	2 cut(s)	228, 329
HpyF3I	CTNAG	3 cut(s)	26, 257, 383
HpySE526I	ACGT	2 cut(s)	354, 417
Hsp92II	CATG	2 cut(s)	292, 397
Kzo9I	GATC	4 cut(s)	169, 335, 517, 549
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	3 cut(s)	97, 113, 433
Lsp1109I	GCAGC	3 cut(s)	295, 341, 366
MabI	ACCWGGT	1 cut(s)	240
MaeI	CTAG	1 cut(s)	507
MaeII	ACGT	2 cut(s)	354, 417
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	4 cut(s)	171, 337, 519, 551
MboI	GATC	4 cut(s)	169, 335, 517, 549
MboII	GAAGA	9 cut(s)	43, 55, 65, 354, 494, 497, 577, 625, 628
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	543
MluCI	AATT	1 cut(s)	284
MlyI	GAGTC	2 cut(s)	230, 330
MseI	TTAA	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	332
MspR9I	CCNGG	4 cut(s)	242, 263, 305, 399
MvaI	CCWGG	4 cut(s)	242, 263, 305, 399
NdeII	GATC	4 cut(s)	169, 335, 517, 549
NlaIII	CATG	2 cut(s)	292, 397
NlaIV	GGNNCC	2 cut(s)	246, 591
NmuCI	GTSAC	1 cut(s)	203
NspI	RCATGY	1 cut(s)	397
PaeR7I	CTCGAG	1 cut(s)	315
PciSI	GCTCTTC	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	501, 545
PflMI	CCANNNNNTGG	1 cut(s)	289
PkrI	GCNGC	4 cut(s)	200, 310, 331, 381
Ple19I	CGATCG	1 cut(s)	172
PleI	GAGTC	2 cut(s)	229, 329
PpsI	GAGTC	2 cut(s)	229, 329
PpuMI	RGGWCCY	1 cut(s)	265
Psp124BI	GAGCTC	1 cut(s)	543
Psp5II	RGGWCCY	1 cut(s)	265
Psp6I	CCWGG	4 cut(s)	240, 261, 303, 397
PspGI	CCWGG	4 cut(s)	240, 261, 303, 397
PspN4I	GGNNCC	2 cut(s)	246, 591
PspPI	GGNCC	4 cut(s)	33, 132, 265, 280
PspPPI	RGGWCCY	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	517
PvuI	CGATCG	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	332
SacI	GAGCTC	1 cut(s)	543
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	4 cut(s)	199, 309, 330, 380
Sau3AI	GATC	4 cut(s)	169, 335, 517, 549
Sau96I	GGNCC	4 cut(s)	33, 132, 265, 280
SchI	GAGTC	2 cut(s)	230, 330
ScrFI	CCNGG	4 cut(s)	242, 263, 305, 399
SduI	GDGCHC	1 cut(s)	543
SexAI	ACCWGGT	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	210
Sfr274I	CTCGAG	1 cut(s)	315
SinI	GGWCC	3 cut(s)	132, 265, 280
SlaI	CTCGAG	1 cut(s)	315
SmlI	CTYRAG	3 cut(s)	315, 473, 578
SmoI	CTYRAG	3 cut(s)	315, 473, 578
Sse9I	AATT	1 cut(s)	284
SsiI	CCGC	1 cut(s)	199
SspMI	CTAG	1 cut(s)	507
SstI	GAGCTC	1 cut(s)	543
StyD4I	CCNGG	4 cut(s)	240, 261, 303, 397
TaaI	ACNGT	1 cut(s)	451
TaiI	ACGT	2 cut(s)	357, 420
TaqI	TCGA	4 cut(s)	168, 316, 543, 548
TasI	AATT	1 cut(s)	284
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	501, 545
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	3 cut(s)	308, 329, 379
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	3 cut(s)	277, 495, 578
TspGWI	ACGGA	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	289
VpaK11BI	GGWCC	3 cut(s)	132, 265, 280
XceI	RCATGY	1 cut(s)	397
XhoI	CTCGAG	1 cut(s)	315
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.