Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004776

Physical Location & Seq

Genomic Coordinates Forward (+)

20891163 .. 20892416

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G51440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCGTCATCATCGGCTTTAGCTCTCAGGAGACTTCTCTCTTCTTCCACCGTCGCCGTCCCTCGCGCCTTAAGAGCCGTTCGTCCGGTGGCTGCTTCATCTCGCCTCTTCAATACCAACGCCGCCAGAAACTATGAAGACGGTGTCGATAGGAACCATCACTCAAACCGACATGTTTCTCGCCACGGCGGCGATTTCTTCTCACATATACTCGATCCGTTTACTCCAACGAGAAGCTTGAGCCAGATGCTGAATTTCATGGACCAGGTAAGCGAAATCCCTTTGGTATCAGCTACTCGTGGAATGGGAGCTTCTGGAGTTAGACGTGGTTGGAACGTGAAAGAGAAAGACGACGCGTTGCATCTAAGGATAGATATGCCGGGACTAAGCAGAGAGGATGTGAAATTGGCTTTGGAACAGAACACATTGGTGATTAGAGGAGAAGGGGAAACAGAGGAGGGAGAAGATGTTTCTGGAGATGGACGGAGGTTTACGAGTAGGATTGAGTTACCGGAGAAAGTATACAAGACTGATGAGATTAAGGCGGAAATGAAGAATGGTGTGTTGAAAGTGGTGATTCCAAAGATTAAAGAGGATGAGCGTAACAATATTCGTCACATAAACGTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0010035 GO:0010038 GO:0042221 GO:0046686 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

210

Amino Acids

23.47

Weight (kDa)

8.96

Isoelectric Point (pI)

52.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	113 - 209	4.8e-19	Hsp20/alpha crystallin family
ArsA_HSP20	PF17886	118 - 191	2.4e-07	HSP20-like domain found in ArsA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25200 AT5G51440
fragaria_vesca	FvH4_5g18720 FvH4_5g18720 FvH4_7g27540
malus_domestica	MD06G1060300.v1.1 MD07G1253800.v1.1
prunus_persica	Prupe.5G071200_v2.0.a1
pyrus_communis	pycom06g04980
rosa_chinensis	RchiOBHm_Chr1g0374411 RchiOBHm_Chr7g0203041
rosa_laevigata	RLG00000003557 RLG00000026740
rosa_multiflora	Rmu_co7998068.1_g000001 Rmu_sc0004999.1_g000002 Rmu_sc0006877.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254100 Rroxscaffold_4G00283520
rosa_rugosa	Rorug05G0394700 Rorug07G0074200 Rorug07G0285900
rosa_samantha	Rh1AG393600 Rh1BG357900 Rh1DG388800 Rh7AG202800 Rh7BG202600 Rh7CG213600 Rh7DG209800
rosa_wichuraiana	Rw1G034130 Rw1G034250 Rw7G017710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	522
AccII	CGCG	2 cut(s)	66, 356
AciI	CCGC	3 cut(s)	123, 189, 545
AclI	AACGTT	1 cut(s)	624
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	5
AflII	CTTAAG	1 cut(s)	70
AflIII	ACRYGT	2 cut(s)	172, 354
AgsI	TTSAA	2 cut(s)	112, 568
AjiI	CACGTC	1 cut(s)	326
AjnI	CCWGG	1 cut(s)	264
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AleI	CACNNNNGTG	1 cut(s)	428
AluBI	AGCT	4 cut(s)	23, 237, 293, 311
AluI	AGCT	4 cut(s)	23, 237, 293, 311
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	1 cut(s)	209
AlwNI	CAGNNNCTG	1 cut(s)	250
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	262
AsuC2I	CCSGG	1 cut(s)	381
AsuHPI	GGTGA	2 cut(s)	442, 586
AvaII	GGWCC	1 cut(s)	262
BauI	CACGAG	1 cut(s)	297
BbsI	GAAGAC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	2 cut(s)	165, 473
BceAI	ACGGC	3 cut(s)	41, 62, 202
BciT130I	CCWGG	1 cut(s)	266
BcnI	CCSGG	1 cut(s)	381
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	631
BfrI	CTTAAG	1 cut(s)	70
BglI	GCCNNNNNGGC	1 cut(s)	189
BisI	GCNGC	3 cut(s)	93, 123, 190
BlsI	GCNGC	3 cut(s)	94, 124, 191
Bme1390I	CCNGG	2 cut(s)	266, 381
Bme18I	GGWCC	1 cut(s)	262
BmgBI	CACGTC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	2 cut(s)	266, 381
BmsI	GCATC	2 cut(s)	237, 370
BpiI	GAAGAC	1 cut(s)	144
BpmI	CTGGAG	2 cut(s)	336, 495
BpuEI	CTTGAG	1 cut(s)	259
BpuMI	CCSGG	1 cut(s)	381
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	184
BsaWI	WCCGGW	2 cut(s)	85, 511
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	2 cut(s)	403, 601
BseMII	CTCAG	1 cut(s)	40
BseRI	GAGGAG	2 cut(s)	453, 470
BseXI	GCAGC	1 cut(s)	79
Bsh1236I	CGCG	2 cut(s)	66, 356
BsiSI	CCGG	3 cut(s)	86, 380, 512
BslFI	GGGAC	2 cut(s)	44, 396
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	2 cut(s)	44, 396
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	3 cut(s)	123, 189, 545
BspCNI	CTCAG	1 cut(s)	39
BspFNI	CGCG	2 cut(s)	66, 356
BspLI	GGNNCC	1 cut(s)	155
BspPI	GGATC	1 cut(s)	209
BspTI	CTTAAG	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	1 cut(s)	214
BssNAI	GTATAC	1 cut(s)	523
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	297
Bst1107I	GTATAC	1 cut(s)	523
Bst2BI	CACGAG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	52, 143
Bst6I	CTCTTC	2 cut(s)	46, 113
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	70
BstDEI	CTNAG	3 cut(s)	26, 365, 386
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	2 cut(s)	403, 601
BstFNI	CGCG	2 cut(s)	66, 356
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 189
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	264, 379
BstUI	CGCG	2 cut(s)	66, 356
BstV1I	GCAGC	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	144
BstZ17I	GTATAC	1 cut(s)	523
BtgI	CCRYGG	1 cut(s)	184
BtrI	CACGTC	1 cut(s)	326
BtsCI	GGATG	2 cut(s)	403, 601
CaiI	CAGNNNCTG	1 cut(s)	250
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	262
CseI	GACGC	1 cut(s)	362
CsiI	ACCWGGT	1 cut(s)	264
CviAII	CATG	2 cut(s)	173, 259
CviJI	RGCY	9 cut(s)	17, 23, 77, 92, 237, 243, 293, 311, 410
CviKI_1	RGCY	9 cut(s)	17, 23, 77, 92, 237, 243, 293, 311, 410
DdeI	CTNAG	3 cut(s)	26, 365, 386
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Eam1104I	CTCTTC	2 cut(s)	46, 113
EarI	CTCTTC	2 cut(s)	46, 113
EciI	GGCGGA	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	264
FaeI	CATG	2 cut(s)	176, 262
FaiI	YATR	8 cut(s)	135, 174, 207, 209, 260, 377, 523, 620
FaqI	GGGAC	2 cut(s)	44, 396
FatI	CATG	2 cut(s)	172, 258
FblI	GTMKAC	1 cut(s)	522
Fnu4HI	GCNGC	3 cut(s)	93, 123, 190
FokI	GGATG	2 cut(s)	410, 608
Fsp4HI	GCNGC	3 cut(s)	93, 123, 190
FspBI	CTAG	1 cut(s)	631
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	3 cut(s)	93, 123, 190
GsuI	CTGGAG	2 cut(s)	336, 495
HapII	CCGG	3 cut(s)	86, 380, 512
HgaI	GACGC	1 cut(s)	362
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	176, 262
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HindIII	AAGCTT	1 cut(s)	235
HinfI	GANTC	1 cut(s)	577
HpaII	CCGG	3 cut(s)	86, 380, 512
HphI	GGTGA	2 cut(s)	442, 586
Hpy166II	GTNNAC	4 cut(s)	222, 492, 523, 628
Hpy188III	TCNNGA	3 cut(s)	28, 315, 474
Hpy8I	GTNNAC	4 cut(s)	222, 492, 523, 628
Hpy99I	CGWCG	2 cut(s)	56, 356
HpyAV	CCTTC	1 cut(s)	437
HpyCH4III	ACNGT	2 cut(s)	52, 143
HpyCH4IV	ACGT	3 cut(s)	325, 336, 624
HpyCH4V	TGCA	1 cut(s)	361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 189
HpyF3I	CTNAG	3 cut(s)	26, 365, 386
HpySE526I	ACGT	3 cut(s)	325, 336, 624
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	176, 262
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	2 cut(s)	237, 370
MabI	ACCWGGT	1 cut(s)	264
MaeI	CTAG	1 cut(s)	631
MaeII	ACGT	3 cut(s)	325, 336, 624
MaeIII	GTNAC	3 cut(s)	507, 602, 614
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	7 cut(s)	33, 36, 100, 149, 190, 476, 565
MluCI	AATT	2 cut(s)	253, 404
MluI	ACGCGT	1 cut(s)	354
MmeI	TCCRAC	2 cut(s)	251, 311
MnlI	CCTC	8 cut(s)	72, 116, 388, 431, 448, 451, 480, 586
MseI	TTAA	3 cut(s)	71, 540, 588
MslI	CAYNNNNRTG	1 cut(s)	428
MspCI	CTTAAG	1 cut(s)	70
MspI	CCGG	3 cut(s)	86, 380, 512
MspR9I	CCNGG	2 cut(s)	266, 381
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	2 cut(s)	66, 356
MwoI	GCNNNNNNNGC	2 cut(s)	74, 189
NciI	CCSGG	1 cut(s)	381
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	2 cut(s)	176, 262
NlaIV	GGNNCC	1 cut(s)	155
NmuCI	GTSAC	1 cut(s)	614
NspI	RCATGY	1 cut(s)	176
OliI	CACNNNNGTG	1 cut(s)	428
PciI	ACATGT	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	577
PflFI	GACNNNGTC	1 cut(s)	143
PkrI	GCNGC	3 cut(s)	94, 124, 191
PscI	ACATGT	1 cut(s)	172
Psp1406I	AACGTT	1 cut(s)	624
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	262
PstNI	CAGNNNCTG	1 cut(s)	250
PsyI	GACNNNGTC	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	428
SaqAI	TTAA	3 cut(s)	71, 540, 588
SatI	GCNGC	3 cut(s)	93, 123, 190
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	262
ScrFI	CCNGG	2 cut(s)	266, 381
SetI	ASST	9 cut(s)	25, 239, 270, 295, 313, 328, 339, 491, 627
SexAI	ACCWGGT	1 cut(s)	264
SfaNI	GCATC	2 cut(s)	237, 370
SinI	GGWCC	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	428
SmlI	CTYRAG	2 cut(s)	70, 238
SmoI	CTYRAG	2 cut(s)	70, 238
Sse9I	AATT	2 cut(s)	253, 404
SsiI	CCGC	3 cut(s)	123, 189, 545
SspI	AATATT	1 cut(s)	610
SspMI	CTAG	1 cut(s)	631
StyD4I	CCNGG	2 cut(s)	264, 379
TaaI	ACNGT	2 cut(s)	52, 143
TaiI	ACGT	3 cut(s)	328, 339, 627
TaqI	TCGA	2 cut(s)	147, 213
TasI	AATT	2 cut(s)	253, 404
TauI	GCSGC	2 cut(s)	125, 192
TfiI	GAWTC	1 cut(s)	577
Tru1I	TTAA	3 cut(s)	71, 540, 588
Tru9I	TTAA	3 cut(s)	71, 540, 588
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	4 cut(s)	87, 150, 247, 566
TspGWI	ACGGA	2 cut(s)	207, 499
Tth111I	GACNNNGTC	1 cut(s)	143
Vha464I	CTTAAG	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	522
XspI	CTAG	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.