Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7998068.1

Orthogroup ID

OG0004776

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 518

Gene Structure 518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7998068.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 458 bp

atgtgtttgatccattttacgatgagtctcggagtcttgcaagaagtctgaaccaggtgccaagaagtctgagccaggtccttaacttgatggaccaattcatggacaacccatacctggctgcgtctcgaggagtcggtgcagccggatcaagaagagggtgggacgtgaaggaaaacgacgacgcattgctgctgaggatggacatgccagggcttgagaagggggacgtgaaggtgtctgtggagcagaacactctgactgtgagaggagaaggaaaggaccctgaggatgaagaagaaggagggaggagattctctagccgattggatctgcctcctaacctttatgagctcgattcgatcaaggccgaaatgaagaatggggttctcaaggtggtggttcctaaggtgaaagaggaggagaagaagaatgtgtatgaggtgaacattgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

151

Amino Acids

17.0

Weight (kDa)

4.81

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25200 AT5G51440
fragaria_vesca	FvH4_5g18720 FvH4_5g18720 FvH4_7g27540
malus_domestica	MD06G1060300.v1.1 MD07G1253800.v1.1
prunus_persica	Prupe.5G071200_v2.0.a1
pyrus_communis	pycom06g04980
rosa_chinensis	RchiOBHm_Chr1g0374411 RchiOBHm_Chr7g0203041
rosa_laevigata	RLG00000003557 RLG00000026740
rosa_multiflora	Rmu_co7998068.1_g000001 Rmu_sc0004999.1_g000002 Rmu_sc0006877.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254100 Rroxscaffold_4G00283520
rosa_rugosa	Rorug05G0394700 Rorug07G0074200 Rorug07G0285900
rosa_samantha	Rh1AG393600 Rh1BG357900 Rh1DG388800 Rh7AG202800 Rh7BG202600 Rh7CG213600 Rh7DG209800
rosa_wichuraiana	Rw1G034130 Rw1G034250 Rw7G017710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	57
AccB7I	CCANNNNNTGG	1 cut(s)	102
AclWI	GGATC	3 cut(s)	4, 156, 338
AfiI	CCNNNNNNNGG	2 cut(s)	102, 117
AjiI	CACGTC	2 cut(s)	168, 231
AjnI	CCWGG	4 cut(s)	53, 74, 116, 210
AluBI	AGCT	1 cut(s)	354
AluI	AGCT	1 cut(s)	354
Alw21I	GWGCWC	1 cut(s)	356
Alw26I	GTCTC	2 cut(s)	32, 131
AlwI	GGATC	3 cut(s)	4, 156, 338
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	3 cut(s)	121, 142, 192
AspS9I	GGNCC	3 cut(s)	78, 93, 282
AsuHPI	GGTGA	2 cut(s)	423, 456
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	3 cut(s)	78, 93, 282
AxyI	CCTNAGG	2 cut(s)	287, 407
BanI	GGYRCC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	356
BbvCI	CCTCAGC	1 cut(s)	196
BbvI	GCAGC	3 cut(s)	108, 154, 179
BccI	CCATC	2 cut(s)	84, 195
BciT130I	CCWGG	4 cut(s)	55, 76, 118, 212
BcoDI	GTCTC	2 cut(s)	32, 131
BfaI	CTAG	1 cut(s)	320
BisI	GCNGC	3 cut(s)	122, 143, 193
BlsI	GCNGC	3 cut(s)	123, 144, 194
Bme1390I	CCNGG	4 cut(s)	55, 76, 118, 212
Bme18I	GGWCC	3 cut(s)	78, 93, 282
BmeT110I	CYCGRG	1 cut(s)	128
BmgBI	CACGTC	2 cut(s)	168, 231
BmgT120I	GGNCC	3 cut(s)	78, 93, 282
BmiI	GGNNCC	3 cut(s)	59, 284, 404
BmrFI	CCNGG	4 cut(s)	55, 76, 118, 212
Bpu10I	CCTNAGC	1 cut(s)	196
BpuEI	CTTGAG	2 cut(s)	238, 376
BsaJI	CCNNGG	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 117
Bse21I	CCTNAGG	2 cut(s)	287, 407
Bse3DI	GCAATG	1 cut(s)	187
BseBI	CCWGG	4 cut(s)	55, 76, 118, 212
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	2 cut(s)	206, 297
BseLI	CCNNNNNNNGG	2 cut(s)	102, 117
BseMI	GCAATG	1 cut(s)	187
BseMII	CTCAG	3 cut(s)	61, 187, 278
BseRI	GAGGAG	5 cut(s)	146, 284, 324, 433, 436
BseXI	GCAGC	3 cut(s)	108, 154, 179
BsgI	GTGCAG	1 cut(s)	161
BshFI	GGCC	1 cut(s)	370
BshNI	GGYRCC	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	356
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	2 cut(s)	178, 241
BslI	CCNNNNNNNGG	2 cut(s)	102, 117
BsmAI	GTCTC	2 cut(s)	32, 131
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	2 cut(s)	178, 241
BsnI	GGCC	1 cut(s)	370
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	356
Bsp143I	GATC	4 cut(s)	9, 148, 330, 362
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	3 cut(s)	62, 188, 279
BspLI	GGNNCC	3 cut(s)	59, 284, 404
BspPI	GGATC	3 cut(s)	4, 156, 338
BspT107I	GGYRCC	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	4 cut(s)	9, 148, 330, 362
Bst2UI	CCWGG	4 cut(s)	55, 76, 118, 212
Bst4CI	ACNGT	1 cut(s)	264
Bst6I	CTCTTC	1 cut(s)	150
BstDEI	CTNAG	4 cut(s)	70, 196, 287, 407
BstF5I	GGATG	2 cut(s)	206, 297
BstKTI	GATC	4 cut(s)	12, 151, 333, 365
BstMAI	GTCTC	2 cut(s)	32, 131
BstMBI	GATC	4 cut(s)	9, 148, 330, 362
BstNI	CCWGG	4 cut(s)	55, 76, 118, 212
BstNSI	RCATGY	1 cut(s)	210
BstSCI	CCNGG	4 cut(s)	53, 74, 116, 210
BstV1I	GCAGC	3 cut(s)	108, 154, 179
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
Bsu36I	CCTNAGG	2 cut(s)	287, 407
BsuRI	GGCC	1 cut(s)	370
BtrI	CACGTC	2 cut(s)	168, 231
BtsCI	GGATG	2 cut(s)	206, 297
Cfr13I	GGNCC	3 cut(s)	78, 93, 282
CseI	GACGC	2 cut(s)	113, 193
CsiI	ACCWGGT	1 cut(s)	53
CviAII	CATG	2 cut(s)	102, 207
CviJI	RGCY	7 cut(s)	74, 121, 145, 216, 323, 354, 370
CviKI_1	RGCY	7 cut(s)	74, 121, 145, 216, 323, 354, 370
DdeI	CTNAG	4 cut(s)	70, 196, 287, 407
DpnI	GATC	4 cut(s)	11, 150, 332, 364
DpnII	GATC	4 cut(s)	9, 148, 330, 362
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	356
Eco47I	GGWCC	3 cut(s)	78, 93, 282
Eco53kI	GAGCTC	1 cut(s)	354
Eco81I	CCTNAGG	2 cut(s)	287, 407
Eco88I	CYCGRG	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	354
EcoO109I	RGGNCCY	2 cut(s)	78, 282
EcoRII	CCWGG	4 cut(s)	53, 74, 116, 210
EcoT38I	GRGCYC	1 cut(s)	356
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	2 cut(s)	105, 210
FaiI	YATR	5 cut(s)	103, 114, 208, 350, 440
FaqI	GGGAC	2 cut(s)	178, 241
FatI	CATG	2 cut(s)	101, 206
Fnu4HI	GCNGC	3 cut(s)	122, 143, 193
FokI	GGATG	2 cut(s)	213, 304
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	3 cut(s)	122, 143, 193
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	3 cut(s)	122, 143, 193
HaeIII	GGCC	1 cut(s)	370
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	2 cut(s)	113, 193
Hin1II	CATG	2 cut(s)	105, 210
HinfI	GANTC	5 cut(s)	25, 33, 134, 314, 358
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	2 cut(s)	423, 456
Hpy166II	GTNNAC	1 cut(s)	447
Hpy188I	TCNGA	4 cut(s)	32, 50, 71, 260
Hpy188III	TCNNGA	2 cut(s)	128, 152
Hpy8I	GTNNAC	1 cut(s)	447
Hpy99I	CGWCG	2 cut(s)	184, 187
HpyAV	CCTTC	5 cut(s)	165, 216, 228, 268, 295
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4IV	ACGT	2 cut(s)	167, 230
HpyCH4V	TGCA	2 cut(s)	40, 142
HpyF3I	CTNAG	4 cut(s)	70, 196, 287, 407
HpySE526I	ACGT	2 cut(s)	167, 230
Hsp92II	CATG	2 cut(s)	105, 210
Kzo9I	GATC	4 cut(s)	9, 148, 330, 362
LmnI	GCTCC	1 cut(s)	246
Lsp1109I	GCAGC	3 cut(s)	108, 154, 179
MabI	ACCWGGT	1 cut(s)	53
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	2 cut(s)	167, 230
MalI	GATC	4 cut(s)	11, 150, 332, 364
MboI	GATC	4 cut(s)	9, 148, 330, 362
MboII	GAAGA	6 cut(s)	167, 307, 310, 390, 438, 441
MflI	RGATCY	1 cut(s)	330
MhlI	GDGCHC	1 cut(s)	356
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	3 cut(s)	34, 42, 143
MseI	TTAA	1 cut(s)	83
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	4 cut(s)	55, 76, 118, 212
MvaI	CCWGG	4 cut(s)	55, 76, 118, 212
NdeII	GATC	4 cut(s)	9, 148, 330, 362
NlaIII	CATG	2 cut(s)	105, 210
NlaIV	GGNNCC	3 cut(s)	59, 284, 404
NspI	RCATGY	1 cut(s)	210
PaeR7I	CTCGAG	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	314, 358
PflMI	CCANNNNNTGG	1 cut(s)	102
PkrI	GCNGC	3 cut(s)	123, 144, 194
PleI	GAGTC	3 cut(s)	33, 41, 142
PpsI	GAGTC	3 cut(s)	33, 41, 142
PpuMI	RGGWCCY	2 cut(s)	78, 282
Psp124BI	GAGCTC	1 cut(s)	356
Psp5II	RGGWCCY	2 cut(s)	78, 282
Psp6I	CCWGG	4 cut(s)	53, 74, 116, 210
PspGI	CCWGG	4 cut(s)	53, 74, 116, 210
PspN4I	GGNNCC	3 cut(s)	59, 284, 404
PspPI	GGNCC	3 cut(s)	78, 93, 282
PspPPI	RGGWCCY	2 cut(s)	78, 282
PsuI	RGATCY	1 cut(s)	330
SacI	GAGCTC	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	3 cut(s)	122, 143, 193
Sau3AI	GATC	4 cut(s)	9, 148, 330, 362
Sau96I	GGNCC	3 cut(s)	78, 93, 282
SchI	GAGTC	3 cut(s)	34, 42, 143
ScrFI	CCNGG	4 cut(s)	55, 76, 118, 212
SduI	GDGCHC	1 cut(s)	356
SexAI	ACCWGGT	1 cut(s)	53
Sfr274I	CTCGAG	1 cut(s)	128
SinI	GGWCC	3 cut(s)	78, 93, 282
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	3 cut(s)	128, 217, 391
SmoI	CTYRAG	3 cut(s)	128, 217, 391
Sse9I	AATT	1 cut(s)	97
SspMI	CTAG	1 cut(s)	320
SstI	GAGCTC	1 cut(s)	356
StyD4I	CCNGG	4 cut(s)	53, 74, 116, 210
TaaI	ACNGT	1 cut(s)	264
TaiI	ACGT	2 cut(s)	170, 233
TaqI	TCGA	3 cut(s)	129, 356, 361
TasI	AATT	1 cut(s)	97
TfiI	GAWTC	2 cut(s)	314, 358
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TseI	GCWGC	3 cut(s)	121, 142, 192
TspDTI	ATGAA	3 cut(s)	90, 308, 391
Van91I	CCANNNNNTGG	1 cut(s)	102
VpaK11BI	GGWCC	3 cut(s)	78, 93, 282
XceI	RCATGY	1 cut(s)	210
XhoI	CTCGAG	1 cut(s)	128
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.