Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004776

Physical Location & Seq

Genomic Coordinates Forward (+)

8622466 .. 8623789

Gene Structure 1324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G071200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCTTCTTCAGTTTCGATCCTTCTCAGAAGGGCCTCTGCCCCAACCCTCTTCTCCAAGCTCTCCAGCCCCATTCGCTCTGCTTCGGTTTCTCCCCTTGTCTCTCGCTCCTTCAACTCCAACGCCCAGGTCACAAGCTACGATCAAGATGATCGTAGGGTCCCTGTTGATCGCAGCACCACTGACAGGTCTCCCTTTCGCCGCCGTGACCTTGGCCCCACCTTCTTCTCAGATGTGTTTGATCCATTTTCACCAACAAGGAGTCTGAGCCAGGTTCTGAACATGATGGACCAGATCACGGATAACCCATTTTTTGCGGGGTCAAGAAGAGGCTGGGACGTGAAGGAAAACGAGGAAGCTCTGTTTCTGCGGATGGACATGCCAGGCTTAGACAAAGAGGATGTGAAGATCTCGGTGGAGCAGAACACGCTGGTTGTGAAAGGAGAAGATAAAGACTCGGAGGATGAAGAAGGTGGAGGCAGGAGGTTCTCTAGCAGATTGGATCTGCCTCCCAATCTTTACAAGCTCGATTCGATTAGGGCTGAGATGAAGAACGGGGTTCTGAAGCTGGCGATTCCTAAGGTCAAAGAGGACGAAAGGAAGGACGTCTTTGAGGTTAAGGTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

210

Amino Acids

23.64

Weight (kDa)

5.5

Isoelectric Point (pI)

70.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25200 AT5G51440
fragaria_vesca	FvH4_5g18720 FvH4_5g18720 FvH4_7g27540
malus_domestica	MD06G1060300.v1.1 MD07G1253800.v1.1
prunus_persica	Prupe.5G071200_v2.0.a1
pyrus_communis	pycom06g04980
rosa_chinensis	RchiOBHm_Chr1g0374411 RchiOBHm_Chr7g0203041
rosa_laevigata	RLG00000003557 RLG00000026740
rosa_multiflora	Rmu_co7998068.1_g000001 Rmu_sc0004999.1_g000002 Rmu_sc0006877.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254100 Rroxscaffold_4G00283520
rosa_rugosa	Rorug05G0394700 Rorug07G0074200 Rorug07G0285900
rosa_samantha	Rh1AG393600 Rh1BG357900 Rh1DG388800 Rh7AG202800 Rh7BG202600 Rh7CG213600 Rh7DG209800
rosa_wichuraiana	Rw1G034130 Rw1G034250 Rw7G017710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	609
AciI	CCGC	3 cut(s)	202, 317, 370
AclWI	GGATC	3 cut(s)	13, 236, 510
AcuI	CTGAAG	1 cut(s)	584
AcyI	GRCGYC	1 cut(s)	606
AfiI	CCNNNNNNNGG	2 cut(s)	186, 298
AgsI	TTSAA	1 cut(s)	115
AjiI	CACGTC	1 cut(s)	340
AjnI	CCWGG	3 cut(s)	126, 270, 382
AluBI	AGCT	5 cut(s)	61, 138, 359, 526, 568
AluI	AGCT	5 cut(s)	61, 138, 359, 526, 568
Alw26I	GTCTC	2 cut(s)	106, 195
AlwI	GGATC	3 cut(s)	13, 236, 510
AlwNI	CAGNNNCTG	1 cut(s)	277
AoxI	GGCC	2 cut(s)	33, 214
ApeKI	GCWGC	1 cut(s)	174
AspS9I	GGNCC	4 cut(s)	33, 160, 215, 289
AsuHPI	GGTGA	1 cut(s)	243
AvaII	GGWCC	2 cut(s)	160, 289
AxyI	CCTNAGG	1 cut(s)	579
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	2 cut(s)	280, 367
BceAI	ACGGC	1 cut(s)	189
BciT130I	CCWGG	3 cut(s)	128, 272, 384
BcoDI	GTCTC	2 cut(s)	106, 195
BfaI	CTAG	1 cut(s)	492
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	2 cut(s)	175, 202
BlsI	GCNGC	2 cut(s)	176, 203
Bme1390I	CCNGG	3 cut(s)	128, 272, 384
Bme18I	GGWCC	2 cut(s)	160, 289
BmgBI	CACGTC	1 cut(s)	340
BmgT120I	GGNCC	4 cut(s)	33, 160, 215, 289
BmiI	GGNNCC	3 cut(s)	161, 162, 217
BmrFI	CCNGG	3 cut(s)	128, 272, 384
BpmI	CTGGAG	1 cut(s)	49
BsaHI	GRCGYC	1 cut(s)	606
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	126, 211
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 298
Bse21I	CCTNAGG	1 cut(s)	579
BseBI	CCWGG	3 cut(s)	128, 272, 384
BseDI	CCNNGG	2 cut(s)	126, 211
BseGI	GGATG	3 cut(s)	378, 406, 469
BseLI	CCNNNNNNNGG	2 cut(s)	186, 298
BseMII	CTCAG	4 cut(s)	40, 243, 257, 534
BseXI	GCAGC	1 cut(s)	186
BseYI	CCCAGC	1 cut(s)	333
BshFI	GGCC	2 cut(s)	35, 216
BslFI	GGGAC	2 cut(s)	146, 350
BslI	CCNNNNNNNGG	2 cut(s)	186, 298
BsmAI	GTCTC	2 cut(s)	106, 195
BsmFI	GGGAC	2 cut(s)	146, 350
BsnI	GGCC	2 cut(s)	35, 216
Bso31I	GGTCTC	1 cut(s)	195
Bsp143I	GATC	8 cut(s)	18, 142, 151, 169, 241, 294, 408, 502
BspACI	CCGC	3 cut(s)	202, 317, 370
BspANI	GGCC	2 cut(s)	35, 216
BspCNI	CTCAG	4 cut(s)	39, 242, 258, 535
BspLI	GGNNCC	3 cut(s)	161, 162, 217
BspPI	GGATC	3 cut(s)	13, 236, 510
BspTNI	GGTCTC	1 cut(s)	195
BssECI	CCNNGG	2 cut(s)	126, 211
BssMI	GATC	8 cut(s)	18, 142, 151, 169, 241, 294, 408, 502
BssNI	GRCGYC	1 cut(s)	606
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	3 cut(s)	128, 272, 384
Bst6I	CTCTTC	2 cut(s)	56, 322
BstACI	GRCGYC	1 cut(s)	606
BstC8I	GCNNGC	1 cut(s)	570
BstDEI	CTNAG	6 cut(s)	26, 229, 266, 388, 543, 579
BstF5I	GGATG	3 cut(s)	378, 406, 469
BstKTI	GATC	8 cut(s)	21, 145, 154, 172, 244, 297, 411, 505
BstMAI	GTCTC	2 cut(s)	106, 195
BstMBI	GATC	8 cut(s)	18, 142, 151, 169, 241, 294, 408, 502
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 427
BstNI	CCWGG	3 cut(s)	128, 272, 384
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	3 cut(s)	126, 270, 382
BstV1I	GCAGC	1 cut(s)	186
BstX2I	RGATCY	2 cut(s)	408, 502
BstYI	RGATCY	2 cut(s)	408, 502
Bsu36I	CCTNAGG	1 cut(s)	579
BsuRI	GGCC	2 cut(s)	35, 216
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	3 cut(s)	378, 406, 469
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	570
CaiI	CAGNNNCTG	1 cut(s)	277
Cfr13I	GGNCC	4 cut(s)	33, 160, 215, 289
CviAII	CATG	2 cut(s)	283, 379
DdeI	CTNAG	6 cut(s)	26, 229, 266, 388, 543, 579
DpnI	GATC	8 cut(s)	20, 144, 153, 171, 243, 296, 410, 504
DpnII	GATC	8 cut(s)	18, 142, 151, 169, 241, 294, 408, 502
Eam1104I	CTCTTC	2 cut(s)	56, 322
EarI	CTCTTC	2 cut(s)	56, 322
Eco130I	CCWWGG	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	160, 289
Eco57I	CTGAAG	1 cut(s)	584
Eco81I	CCTNAGG	1 cut(s)	579
EcoO109I	RGGNCCY	2 cut(s)	33, 160
EcoRII	CCWGG	3 cut(s)	126, 270, 382
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	2 cut(s)	286, 382
FaiI	YATR	2 cut(s)	284, 380
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FaqI	GGGAC	2 cut(s)	146, 350
FatI	CATG	2 cut(s)	282, 378
FauI	CCCGC	1 cut(s)	310
Fnu4HI	GCNGC	2 cut(s)	175, 202
FokI	GGATG	3 cut(s)	385, 413, 476
Fsp4HI	GCNGC	2 cut(s)	175, 202
FspBI	CTAG	1 cut(s)	492
GluI	GCNGC	2 cut(s)	175, 202
GsaI	CCCAGC	1 cut(s)	337
GsuI	CTGGAG	1 cut(s)	49
HaeIII	GGCC	2 cut(s)	35, 216
Hin1I	GRCGYC	1 cut(s)	606
Hin1II	CATG	2 cut(s)	286, 382
HinfI	GANTC	4 cut(s)	262, 455, 530, 574
HphI	GGTGA	1 cut(s)	243
Hpy188I	TCNGA	6 cut(s)	29, 232, 267, 279, 460, 564
Hpy188III	TCNNGA	2 cut(s)	146, 324
HpyAV	CCTTC	7 cut(s)	24, 32, 121, 232, 337, 464, 595
HpyCH4IV	ACGT	2 cut(s)	339, 606
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 427
HpyF3I	CTNAG	6 cut(s)	26, 229, 266, 388, 543, 579
HpySE526I	ACGT	2 cut(s)	339, 606
Hsp92I	GRCGYC	1 cut(s)	606
Hsp92II	CATG	2 cut(s)	286, 382
KflI	GGGWCCC	1 cut(s)	160
Kzo9I	GATC	8 cut(s)	18, 142, 151, 169, 241, 294, 408, 502
LmnI	GCTCC	2 cut(s)	113, 418
Lsp1109I	GCAGC	1 cut(s)	186
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	2 cut(s)	339, 606
MaeIII	GTNAC	2 cut(s)	130, 206
MalI	GATC	8 cut(s)	20, 144, 153, 171, 243, 296, 410, 504
MboI	GATC	8 cut(s)	18, 142, 151, 169, 241, 294, 408, 502
MboII	GAAGA	7 cut(s)	43, 217, 339, 418, 458, 479, 562
MflI	RGATCY	2 cut(s)	408, 502
MlyI	GAGTC	2 cut(s)	271, 449
MmeI	TCCRAC	1 cut(s)	144
MseI	TTAA	1 cut(s)	618
MspR9I	CCNGG	3 cut(s)	128, 272, 384
MvaI	CCWGG	3 cut(s)	128, 272, 384
MwoI	GCNNNNNNNGC	2 cut(s)	75, 427
NdeII	GATC	8 cut(s)	18, 142, 151, 169, 241, 294, 408, 502
NlaIII	CATG	2 cut(s)	286, 382
NlaIV	GGNNCC	3 cut(s)	161, 162, 217
NmuCI	GTSAC	2 cut(s)	130, 206
NspI	RCATGY	1 cut(s)	382
PfeI	GAWTC	2 cut(s)	530, 574
PkrI	GCNGC	2 cut(s)	176, 203
PleI	GAGTC	2 cut(s)	270, 449
PpsI	GAGTC	2 cut(s)	270, 449
PpuMI	RGGWCCY	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	3 cut(s)	126, 270, 382
PspFI	CCCAGC	1 cut(s)	333
PspGI	CCWGG	3 cut(s)	126, 270, 382
PspN4I	GGNNCC	3 cut(s)	161, 162, 217
PspPI	GGNCC	4 cut(s)	33, 160, 215, 289
PspPPI	RGGWCCY	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	277
PsuI	RGATCY	2 cut(s)	408, 502
SaqAI	TTAA	1 cut(s)	618
SatI	GCNGC	2 cut(s)	175, 202
Sau3AI	GATC	8 cut(s)	18, 142, 151, 169, 241, 294, 408, 502
Sau96I	GGNCC	4 cut(s)	33, 160, 215, 289
SchI	GAGTC	2 cut(s)	271, 449
ScrFI	CCNGG	3 cut(s)	128, 272, 384
SinI	GGWCC	2 cut(s)	160, 289
SsiI	CCGC	3 cut(s)	202, 317, 370
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	3 cut(s)	126, 270, 382
StyI	CCWWGG	1 cut(s)	211
TaiI	ACGT	2 cut(s)	342, 609
TaqI	TCGA	4 cut(s)	17, 528, 533, 624
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	2 cut(s)	530, 574
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	2 cut(s)	130, 206
TseI	GCWGC	1 cut(s)	174
Tsp45I	GTSAC	2 cut(s)	130, 206
TspDTI	ATGAA	2 cut(s)	480, 563
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	2 cut(s)	160, 289
XceI	RCATGY	1 cut(s)	382
XspI	CTAG	1 cut(s)	492
ZraI	GACGTC	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.