Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004776

Physical Location & Seq

Genomic Coordinates Reverse (-)

18491001 .. 18492562

Gene Structure 1562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG202800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCTTCGTCAATCTCAATCGCTCTCAGAAGGGCCTCATCCCCAAGCCTCTTCTCCAAGCTCTTCAACCCTCTTCGCTCTGTTTCAGTAGCTCCCTCTGTTTCTCGCTCCTTCAACACCAACGCCCAGAGGACCAGCTACGACGACGATGACCGGAGCGTCTCCGTCGACCGCACCACCACCAGCTCTCCCTCTCGCCGCCGTGACCCTATAGATGTGTTTGATCCATTTTACGATGAGTCTCGGAGTCTTGCAAGAAGTCTGAACCAGGTGCCAAGAAGTCTGAGCCAGGTCCTTAACTTGATGGACCAATTCATGGACAACCCATACCTGGCTGCGTCTCGAGGAGTCGGTGCAGCCGGATCAAGAAGAGGGTGGGACGTGAAGGAAAACGACGACGCATTGCTGCTGAGGATGGACATGCCAGGGCTTGAGAAGGGGGACGTGAAGGTGTCGGTGGAGCAGAACACTCTGACTGTGAGAGGAGAAGGAAAGGACCCTGAGGATGAAGAAGAAGGAGGGAGGAGATTCTCTAGCCGATTGGATCTGCCTCCTAACCTTTATGAGCTCGATTCGATCAAGGCCGAAATGAAGAATGGGGTTCTCAAGGTGGTGGTTCCTAAGGTGAGAGAGGAGGAGAAGAAGAATGTGTATGAGGTGAAGATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

223

Amino Acids

24.95

Weight (kDa)

5.5

Isoelectric Point (pI)

63.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	127 - 222	1.8e-19	Hsp20/alpha crystallin family
ArsA_HSP20	PF17886	133 - 204	2.2e-06	HSP20-like domain found in ArsA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25200 AT5G51440
fragaria_vesca	FvH4_5g18720 FvH4_5g18720 FvH4_7g27540
malus_domestica	MD06G1060300.v1.1 MD07G1253800.v1.1
prunus_persica	Prupe.5G071200_v2.0.a1
pyrus_communis	pycom06g04980
rosa_chinensis	RchiOBHm_Chr1g0374411 RchiOBHm_Chr7g0203041
rosa_laevigata	RLG00000003557 RLG00000026740
rosa_multiflora	Rmu_co7998068.1_g000001 Rmu_sc0004999.1_g000002 Rmu_sc0006877.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254100 Rroxscaffold_4G00283520
rosa_rugosa	Rorug05G0394700 Rorug07G0074200 Rorug07G0285900
rosa_samantha	Rh1AG393600 Rh1BG357900 Rh1DG388800 Rh7AG202800 Rh7BG202600 Rh7CG213600 Rh7DG209800
rosa_wichuraiana	Rw1G034130 Rw1G034250 Rw7G017710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AccB1I	GGYRCC	1 cut(s)	271
AccB7I	CCANNNNNTGG	1 cut(s)	316
AccI	GTMKAC	1 cut(s)	168
AciI	CCGC	2 cut(s)	172, 199
AclWI	GGATC	3 cut(s)	218, 370, 552
AfiI	CCNNNNNNNGG	2 cut(s)	316, 331
AgsI	TTSAA	2 cut(s)	67, 115
AjiI	CACGTC	2 cut(s)	382, 445
AjnI	CCWGG	4 cut(s)	267, 288, 330, 424
AluBI	AGCT	5 cut(s)	61, 92, 138, 186, 568
AluI	AGCT	5 cut(s)	61, 92, 138, 186, 568
Alw21I	GWGCWC	1 cut(s)	570
Alw26I	GTCTC	3 cut(s)	166, 246, 345
AlwI	GGATC	3 cut(s)	218, 370, 552
Ama87I	CYCGRG	1 cut(s)	342
AoxI	GGCC	2 cut(s)	33, 582
ApeKI	GCWGC	3 cut(s)	335, 356, 406
AspS9I	GGNCC	5 cut(s)	33, 132, 292, 307, 496
AsuHPI	GGTGA	2 cut(s)	637, 670
AvaI	CYCGRG	1 cut(s)	342
AvaII	GGWCC	4 cut(s)	132, 292, 307, 496
AxyI	CCTNAGG	2 cut(s)	501, 621
BanI	GGYRCC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	570
Bbv12I	GWGCWC	1 cut(s)	570
BbvCI	CCTCAGC	1 cut(s)	410
BbvI	GCAGC	3 cut(s)	322, 368, 393
BccI	CCATC	2 cut(s)	298, 409
BceAI	ACGGC	1 cut(s)	186
BciT130I	CCWGG	4 cut(s)	269, 290, 332, 426
BcoDI	GTCTC	3 cut(s)	166, 246, 345
BfaI	CTAG	1 cut(s)	534
BfmI	CTRYAG	1 cut(s)	210
BisI	GCNGC	4 cut(s)	199, 336, 357, 407
BlsI	GCNGC	4 cut(s)	200, 337, 358, 408
Bme1390I	CCNGG	4 cut(s)	269, 290, 332, 426
Bme18I	GGWCC	4 cut(s)	132, 292, 307, 496
BmeT110I	CYCGRG	1 cut(s)	342
BmgBI	CACGTC	2 cut(s)	382, 445
BmgT120I	GGNCC	5 cut(s)	33, 132, 292, 307, 496
BmiI	GGNNCC	3 cut(s)	273, 498, 618
BmrFI	CCNGG	4 cut(s)	269, 290, 332, 426
Bpu10I	CCTNAGC	1 cut(s)	410
BpuEI	CTTGAG	2 cut(s)	452, 590
BsaJI	CCNNGG	1 cut(s)	425
BsaWI	WCCGGW	1 cut(s)	153
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 331
Bse21I	CCTNAGG	2 cut(s)	501, 621
Bse3DI	GCAATG	1 cut(s)	401
BseBI	CCWGG	4 cut(s)	269, 290, 332, 426
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	3 cut(s)	38, 420, 511
BseLI	CCNNNNNNNGG	2 cut(s)	316, 331
BseMI	GCAATG	1 cut(s)	401
BseMII	CTCAG	4 cut(s)	40, 275, 401, 492
BseRI	GAGGAG	5 cut(s)	360, 498, 538, 647, 650
BseXI	GCAGC	3 cut(s)	322, 368, 393
BsgI	GTGCAG	1 cut(s)	375
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	2 cut(s)	35, 584
BshNI	GGYRCC	1 cut(s)	271
BsiEI	CGRYCG	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	570
BsiHKCI	CYCGRG	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	154, 360
BslFI	GGGAC	2 cut(s)	392, 455
BslI	CCNNNNNNNGG	2 cut(s)	316, 331
BsmAI	GTCTC	3 cut(s)	166, 246, 345
BsmBI	CGTCTC	2 cut(s)	166, 345
BsmFI	GGGAC	2 cut(s)	392, 455
BsnI	GGCC	2 cut(s)	35, 584
BsoBI	CYCGRG	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	570
Bsp143I	GATC	4 cut(s)	223, 362, 544, 576
BspACI	CCGC	2 cut(s)	172, 199
BspANI	GGCC	2 cut(s)	35, 584
BspCNI	CTCAG	4 cut(s)	39, 276, 402, 493
BspLI	GGNNCC	3 cut(s)	273, 498, 618
BspPI	GGATC	3 cut(s)	218, 370, 552
BspQI	GCTCTTC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	4 cut(s)	223, 362, 544, 576
Bst2UI	CCWGG	4 cut(s)	269, 290, 332, 426
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	4 cut(s)	56, 68, 78, 364
BstDEI	CTNAG	5 cut(s)	26, 284, 410, 501, 621
BstF5I	GGATG	3 cut(s)	38, 420, 511
BstKTI	GATC	4 cut(s)	226, 365, 547, 579
BstMAI	GTCTC	3 cut(s)	166, 246, 345
BstMBI	GATC	4 cut(s)	223, 362, 544, 576
BstMCI	CGRYCG	1 cut(s)	172
BstNI	CCWGG	4 cut(s)	269, 290, 332, 426
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	4 cut(s)	267, 288, 330, 424
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	3 cut(s)	322, 368, 393
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
Bsu36I	CCTNAGG	2 cut(s)	501, 621
BsuRI	GGCC	2 cut(s)	35, 584
BtrI	CACGTC	2 cut(s)	382, 445
BtsCI	GGATG	3 cut(s)	38, 420, 511
Cfr13I	GGNCC	5 cut(s)	33, 132, 292, 307, 496
CseI	GACGC	3 cut(s)	148, 327, 407
CsiI	ACCWGGT	1 cut(s)	267
CviAII	CATG	2 cut(s)	316, 421
DdeI	CTNAG	5 cut(s)	26, 284, 410, 501, 621
DpnI	GATC	4 cut(s)	225, 364, 546, 578
DpnII	GATC	4 cut(s)	223, 362, 544, 576
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
Eam1104I	CTCTTC	4 cut(s)	56, 68, 78, 364
EarI	CTCTTC	4 cut(s)	56, 68, 78, 364
Ecl136II	GAGCTC	1 cut(s)	568
Eco24I	GRGCYC	1 cut(s)	570
Eco47I	GGWCC	4 cut(s)	132, 292, 307, 496
Eco53kI	GAGCTC	1 cut(s)	568
Eco81I	CCTNAGG	2 cut(s)	501, 621
Eco88I	CYCGRG	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	568
EcoO109I	RGGNCCY	3 cut(s)	33, 292, 496
EcoRII	CCWGG	4 cut(s)	267, 288, 330, 424
EcoT38I	GRGCYC	1 cut(s)	570
Esp3I	CGTCTC	2 cut(s)	166, 345
FaeI	CATG	2 cut(s)	319, 424
FaiI	YATR	6 cut(s)	212, 317, 328, 422, 564, 654
FaqI	GGGAC	2 cut(s)	392, 455
FatI	CATG	2 cut(s)	315, 420
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	4 cut(s)	199, 336, 357, 407
FokI	GGATG	3 cut(s)	25, 427, 518
FriOI	GRGCYC	1 cut(s)	570
Fsp4HI	GCNGC	4 cut(s)	199, 336, 357, 407
FspBI	CTAG	1 cut(s)	534
GluI	GCNGC	4 cut(s)	199, 336, 357, 407
HaeIII	GGCC	2 cut(s)	35, 584
HapII	CCGG	2 cut(s)	154, 360
HgaI	GACGC	3 cut(s)	148, 327, 407
Hin1II	CATG	2 cut(s)	319, 424
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	5 cut(s)	239, 247, 348, 528, 572
HpaII	CCGG	2 cut(s)	154, 360
HphI	GGTGA	2 cut(s)	637, 670
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	5 cut(s)	29, 246, 264, 285, 474
Hpy188III	TCNNGA	2 cut(s)	342, 366
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	5 cut(s)	146, 149, 170, 398, 401
HpyAV	CCTTC	7 cut(s)	24, 121, 379, 430, 442, 482, 509
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4IV	ACGT	2 cut(s)	381, 444
HpyCH4V	TGCA	2 cut(s)	254, 356
HpyF3I	CTNAG	5 cut(s)	26, 284, 410, 501, 621
HpySE526I	ACGT	2 cut(s)	381, 444
Hsp92II	CATG	2 cut(s)	319, 424
Kzo9I	GATC	4 cut(s)	223, 362, 544, 576
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	4 cut(s)	97, 113, 156, 460
Lsp1109I	GCAGC	3 cut(s)	322, 368, 393
MabI	ACCWGGT	1 cut(s)	267
MaeI	CTAG	1 cut(s)	534
MaeII	ACGT	2 cut(s)	381, 444
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	4 cut(s)	225, 364, 546, 578
MboI	GATC	4 cut(s)	223, 362, 544, 576
MboII	GAAGA	9 cut(s)	43, 55, 65, 381, 521, 524, 604, 652, 655
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	1 cut(s)	570
MluCI	AATT	1 cut(s)	311
MlyI	GAGTC	3 cut(s)	248, 256, 357
MseI	TTAA	1 cut(s)	297
MspI	CCGG	2 cut(s)	154, 360
MspR9I	CCNGG	4 cut(s)	269, 290, 332, 426
MvaI	CCWGG	4 cut(s)	269, 290, 332, 426
NdeII	GATC	4 cut(s)	223, 362, 544, 576
NlaIII	CATG	2 cut(s)	319, 424
NlaIV	GGNNCC	3 cut(s)	273, 498, 618
NmuCI	GTSAC	1 cut(s)	203
NspI	RCATGY	1 cut(s)	424
PaeR7I	CTCGAG	1 cut(s)	342
PciSI	GCTCTTC	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	528, 572
PflMI	CCANNNNNTGG	1 cut(s)	316
PkrI	GCNGC	4 cut(s)	200, 337, 358, 408
PleI	GAGTC	3 cut(s)	247, 255, 356
PpsI	GAGTC	3 cut(s)	247, 255, 356
PpuMI	RGGWCCY	2 cut(s)	292, 496
Psp124BI	GAGCTC	1 cut(s)	570
Psp5II	RGGWCCY	2 cut(s)	292, 496
Psp6I	CCWGG	4 cut(s)	267, 288, 330, 424
PspGI	CCWGG	4 cut(s)	267, 288, 330, 424
PspN4I	GGNNCC	3 cut(s)	273, 498, 618
PspPI	GGNCC	5 cut(s)	33, 132, 292, 307, 496
PspPPI	RGGWCCY	2 cut(s)	292, 496
PsuI	RGATCY	1 cut(s)	544
SacI	GAGCTC	1 cut(s)	570
SalI	GTCGAC	1 cut(s)	167
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	4 cut(s)	199, 336, 357, 407
Sau3AI	GATC	4 cut(s)	223, 362, 544, 576
Sau96I	GGNCC	5 cut(s)	33, 132, 292, 307, 496
SchI	GAGTC	3 cut(s)	248, 256, 357
ScrFI	CCNGG	4 cut(s)	269, 290, 332, 426
SduI	GDGCHC	1 cut(s)	570
SexAI	ACCWGGT	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	210
Sfr274I	CTCGAG	1 cut(s)	342
SinI	GGWCC	4 cut(s)	132, 292, 307, 496
SlaI	CTCGAG	1 cut(s)	342
SmlI	CTYRAG	3 cut(s)	342, 431, 605
SmoI	CTYRAG	3 cut(s)	342, 431, 605
Sse9I	AATT	1 cut(s)	311
SsiI	CCGC	2 cut(s)	172, 199
SspMI	CTAG	1 cut(s)	534
SstI	GAGCTC	1 cut(s)	570
StyD4I	CCNGG	4 cut(s)	267, 288, 330, 424
TaaI	ACNGT	1 cut(s)	478
TaiI	ACGT	2 cut(s)	384, 447
TaqI	TCGA	4 cut(s)	168, 343, 570, 575
TasI	AATT	1 cut(s)	311
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	528, 572
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	3 cut(s)	335, 356, 406
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	3 cut(s)	304, 522, 605
TspGWI	ACGGA	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	316
VpaK11BI	GGWCC	4 cut(s)	132, 292, 307, 496
XceI	RCATGY	1 cut(s)	424
XhoI	CTCGAG	1 cut(s)	342
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.