Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004776

Physical Location & Seq

Genomic Coordinates Reverse (-)

5436108 .. 5436961

Gene Structure 854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00283520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCTTCCTCCCTAACCCTCCGGCGACTCCTCTCCTCCAATCTCCTACCCAGACCGCTCTCCTCTTCAGCATTCCGCCCAATCCCGGCCGCCAAACTCTTCAACACCAACGCCTCCCGCCGCTACGACGACTCCGATGAAAGCGACGAAACCGACCTTGACTCCTATCGCCGCCACGATCGATCTCTCCCTCGCCGCCGTGACAACTTCATCTCCGATGTGTTTGCTCCTCCTCCGTTCTCGGTGGGCCGGAACCTGAACCAGGTGCTGAATCTGGTGGACCAGATCTCGGAGAACCCCTTCCTCTCGGCCACGCGCCGCTGCTGGGACGCGCGTGAGACGGAGGACGGTCTGCATCTCCGGTTCGAAATGCCGGGGCTGGGGAAAGAAGACGTGAAGGTTTCGGTGGAGAAGAACACTCTGGTGATCAGAGCCGAAGGCGGACACGTAGATGGTGAAGAAGAGCCGAGGAGGTACTCCACCGGAATTCAGCTGCCGGAGAAGATGTTCAAGACGGACGGCGTCAAGGCGGAGATGAAGAACGGCGTGCTCAGGGTGGTTGTGCCGAAGATTAAGGAGGAGGAGAGGAGCGACGTGTTTCACGTGAGGGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0010035 GO:0010038 GO:0042221 GO:0046686 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

205

Amino Acids

23.39

Weight (kDa)

6.47

Isoelectric Point (pI)

62.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	111 - 204	1.5e-14	Hsp20/alpha crystallin family
ArsA_HSP20	PF17886	116 - 186	5.3e-06	HSP20-like domain found in ArsA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25200 AT5G51440
fragaria_vesca	FvH4_5g18720 FvH4_5g18720 FvH4_7g27540
malus_domestica	MD06G1060300.v1.1 MD07G1253800.v1.1
prunus_persica	Prupe.5G071200_v2.0.a1
pyrus_communis	pycom06g04980
rosa_chinensis	RchiOBHm_Chr1g0374411 RchiOBHm_Chr7g0203041
rosa_laevigata	RLG00000003557 RLG00000026740
rosa_multiflora	Rmu_co7998068.1_g000001 Rmu_sc0004999.1_g000002 Rmu_sc0006877.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254100 Rroxscaffold_4G00283520
rosa_rugosa	Rorug05G0394700 Rorug07G0074200 Rorug07G0285900
rosa_samantha	Rh1AG393600 Rh1BG357900 Rh1DG388800 Rh7AG202800 Rh7BG202600 Rh7CG213600 Rh7DG209800
rosa_wichuraiana	Rw1G034130 Rw1G034250 Rw7G017710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	58
AccII	CGCG	3 cut(s)	316, 332, 334
AcoI	YGGCCR	2 cut(s)	87, 309
AcsI	RAATTY	1 cut(s)	486
AcuI	CTGAAG	1 cut(s)	51
AcvI	CACGTG	1 cut(s)	604
AcyI	GRCGYC	1 cut(s)	522
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	5 cut(s)	85, 262, 289, 325, 380
AflIII	ACRYGT	2 cut(s)	445, 594
AgsI	TTSAA	2 cut(s)	103, 511
AjiI	CACGTC	2 cut(s)	394, 595
AjnI	CCWGG	1 cut(s)	261
AleI	CACNNNNGTG	1 cut(s)	422
AloI	GAACNNNNNNTCC	2 cut(s)	491, 523
AluBI	AGCT	1 cut(s)	493
AluI	AGCT	1 cut(s)	493
Alw21I	GWGCWC	1 cut(s)	552
Alw26I	GTCTC	1 cut(s)	332
AlwNI	CAGNNNCTG	1 cut(s)	268
AoxI	GGCC	3 cut(s)	87, 247, 309
ApeKI	GCWGC	2 cut(s)	321, 493
ApoI	RAATTY	1 cut(s)	486
Asp700I	GAANNNNTTC	2 cut(s)	299, 506
AspLEI	GCGC	2 cut(s)	318, 334
AspS9I	GGNCC	2 cut(s)	247, 280
AsuC2I	CCSGG	2 cut(s)	86, 375
AsuHPI	GGTGA	2 cut(s)	436, 467
AsuII	TTCGAA	1 cut(s)	366
AvaII	GGWCC	1 cut(s)	280
BbrPI	CACGTG	1 cut(s)	604
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	2 cut(s)	308, 480
BccI	CCATC	1 cut(s)	446
BceAI	ACGGC	3 cut(s)	183, 535, 559
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	1 cut(s)	263
BclI	TGATCA	1 cut(s)	426
BcnI	CCSGG	2 cut(s)	86, 375
BcoDI	GTCTC	1 cut(s)	332
BglII	AGATCT	1 cut(s)	285
BisI	GCNGC	7 cut(s)	90, 121, 172, 196, 319, 322, 494
BlsI	GCNGC	7 cut(s)	91, 122, 173, 197, 320, 323, 495
Bme1390I	CCNGG	3 cut(s)	86, 263, 375
Bme18I	GGWCC	1 cut(s)	280
BmgBI	CACGTC	2 cut(s)	394, 595
BmgT120I	GGNCC	2 cut(s)	247, 280
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	3 cut(s)	86, 263, 375
BmsI	GCATC	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	551
Bpu14I	TTCGAA	1 cut(s)	366
BpuMI	CCSGG	2 cut(s)	86, 375
Bsa29I	ATCGAT	1 cut(s)	181
BsaAI	YACGTR	2 cut(s)	448, 604
BsaHI	GRCGYC	1 cut(s)	522
BsaJI	CCNNGG	2 cut(s)	374, 467
BsaWI	WCCGGW	2 cut(s)	360, 482
BsaXI	ACNNNNNCTCC	8 cut(s)	116, 146, 146, 176, 197, 227, 491, 521
Bsc4I	CCNNNNNNNGG	5 cut(s)	85, 262, 289, 325, 380
BseBI	CCWGG	1 cut(s)	263
BseCI	ATCGAT	1 cut(s)	181
BseDI	CCNNGG	2 cut(s)	374, 467
BseLI	CCNNNNNNNGG	5 cut(s)	85, 262, 289, 325, 380
BseMII	CTCAG	1 cut(s)	565
BseRI	GAGGAG	9 cut(s)	20, 25, 52, 219, 222, 484, 593, 596, 601
BseX3I	CGGCCG	1 cut(s)	87
BseXI	GCAGC	2 cut(s)	308, 480
BseYI	CCCAGC	2 cut(s)	324, 379
Bsh1236I	CGCG	3 cut(s)	316, 332, 334
Bsh1285I	CGRYCG	2 cut(s)	90, 181
BshFI	GGCC	3 cut(s)	89, 249, 311
BshVI	ATCGAT	1 cut(s)	181
BsiEI	CGRYCG	2 cut(s)	90, 181
BsiHKAI	GWGCWC	1 cut(s)	552
BsiSI	CCGG	7 cut(s)	22, 86, 250, 361, 374, 483, 497
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	5 cut(s)	85, 262, 289, 325, 380
BsmAI	GTCTC	1 cut(s)	332
BsmBI	CGTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	341
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	3 cut(s)	89, 249, 311
Bsp119I	TTCGAA	1 cut(s)	366
Bsp1286I	GDGCHC	1 cut(s)	552
Bsp143I	GATC	4 cut(s)	178, 182, 285, 426
BspANI	GGCC	3 cut(s)	89, 249, 311
BspCNI	CTCAG	1 cut(s)	564
BspDI	ATCGAT	1 cut(s)	181
BspFNI	CGCG	3 cut(s)	316, 332, 334
BspLI	GGNNCC	1 cut(s)	254
BspQI	GCTCTTC	1 cut(s)	456
BspT104I	TTCGAA	1 cut(s)	366
BsrBI	CCGCTC	1 cut(s)	58
BssECI	CCNNGG	2 cut(s)	374, 467
BssMI	GATC	4 cut(s)	178, 182, 285, 426
BssNI	GRCGYC	1 cut(s)	522
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	3 cut(s)	70, 104, 456
BstACI	GRCGYC	1 cut(s)	522
BstBAI	YACGTR	2 cut(s)	448, 604
BstBI	TTCGAA	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	1 cut(s)	551
BstENI	CCTNNNNNAGG	1 cut(s)	260
BstFNI	CGCG	3 cut(s)	316, 332, 334
BstHHI	GCGC	2 cut(s)	318, 334
BstKTI	GATC	4 cut(s)	181, 185, 288, 429
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	4 cut(s)	178, 182, 285, 426
BstMCI	CGRYCG	2 cut(s)	90, 181
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	3 cut(s)	84, 261, 373
BstUI	CGCG	3 cut(s)	316, 332, 334
BstV1I	GCAGC	2 cut(s)	308, 480
BstV2I	GAAGAC	1 cut(s)	396
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
BstZI	CGGCCG	1 cut(s)	87
Bsu15I	ATCGAT	1 cut(s)	181
BsuRI	GGCC	3 cut(s)	89, 249, 311
BsuTUI	ATCGAT	1 cut(s)	181
BtrI	CACGTC	2 cut(s)	394, 595
Cac8I	GCNNGC	1 cut(s)	548
CaiI	CAGNNNCTG	1 cut(s)	268
CfoI	GCGC	2 cut(s)	318, 334
Cfr13I	GGNCC	2 cut(s)	247, 280
ClaI	ATCGAT	1 cut(s)	181
CseI	GACGC	2 cut(s)	338, 511
CsiI	ACCWGGT	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	475
CviJI	RGCY	8 cut(s)	5, 89, 249, 311, 379, 434, 466, 493
CviKI_1	RGCY	8 cut(s)	5, 89, 249, 311, 379, 434, 466, 493
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	1 cut(s)	551
DpnI	GATC	4 cut(s)	180, 184, 287, 428
DpnII	GATC	4 cut(s)	178, 182, 285, 426
EaeI	YGGCCR	2 cut(s)	87, 309
EagI	CGGCCG	1 cut(s)	87
Eam1104I	CTCTTC	3 cut(s)	70, 104, 456
EarI	CTCTTC	3 cut(s)	70, 104, 456
EciI	GGCGGA	3 cut(s)	65, 456, 545
EclXI	CGGCCG	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	280
Eco52I	CGGCCG	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	51
Eco72I	CACGTG	1 cut(s)	604
EcoNI	CCTNNNNNAGG	1 cut(s)	260
EcoRI	GAATTC	1 cut(s)	486
EcoRII	CCWGG	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	332
FaqI	GGGAC	1 cut(s)	341
FauI	CCCGC	1 cut(s)	125
FbaI	TGATCA	1 cut(s)	426
Fnu4HI	GCNGC	7 cut(s)	90, 121, 172, 196, 319, 322, 494
Fsp4HI	GCNGC	7 cut(s)	90, 121, 172, 196, 319, 322, 494
GlaI	GCGC	2 cut(s)	317, 333
GluI	GCNGC	7 cut(s)	90, 121, 172, 196, 319, 322, 494
GsaI	CCCAGC	2 cut(s)	328, 383
HaeIII	GGCC	3 cut(s)	89, 249, 311
HapII	CCGG	7 cut(s)	22, 86, 250, 361, 374, 483, 497
HgaI	GACGC	2 cut(s)	338, 511
HhaI	GCGC	2 cut(s)	318, 334
Hin1I	GRCGYC	1 cut(s)	522
Hin6I	GCGC	2 cut(s)	316, 332
HinP1I	GCGC	2 cut(s)	316, 332
HinfI	GANTC	4 cut(s)	27, 131, 161, 271
HpaII	CCGG	7 cut(s)	22, 86, 250, 361, 374, 483, 497
HphI	GGTGA	2 cut(s)	436, 467
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	4 cut(s)	136, 217, 292, 431
Hpy188III	TCNNGA	1 cut(s)	511
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	3 cut(s)	131, 149, 596
HpyAV	CCTTC	3 cut(s)	310, 391, 431
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4IV	ACGT	4 cut(s)	393, 447, 594, 603
HpyCH4V	TGCA	1 cut(s)	355
HpyF3I	CTNAG	1 cut(s)	551
HpySE526I	ACGT	4 cut(s)	393, 447, 594, 603
Hsp92I	GRCGYC	1 cut(s)	522
HspAI	GCGC	2 cut(s)	316, 332
Ksp22I	TGATCA	1 cut(s)	426
Kzo9I	GATC	4 cut(s)	178, 182, 285, 426
LguI	GCTCTTC	1 cut(s)	456
LmnI	GCTCC	2 cut(s)	232, 588
Lsp1109I	GCAGC	2 cut(s)	308, 480
LweI	GCATC	1 cut(s)	364
MabI	ACCWGGT	1 cut(s)	261
MaeII	ACGT	4 cut(s)	393, 447, 594, 603
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	4 cut(s)	180, 184, 287, 428
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	4 cut(s)	178, 182, 285, 426
MboII	GAAGA	9 cut(s)	57, 91, 401, 424, 470, 473, 514, 550, 580
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	1 cut(s)	552
MluCI	AATT	1 cut(s)	486
MlyI	GAGTC	3 cut(s)	21, 125, 155
MroXI	GAANNNNTTC	2 cut(s)	299, 506
MseI	TTAA	1 cut(s)	573
MslI	CAYNNNNRTG	2 cut(s)	422, 450
MspA1I	CMGCKG	2 cut(s)	321, 493
MspI	CCGG	7 cut(s)	22, 86, 250, 361, 374, 483, 497
MspR9I	CCNGG	3 cut(s)	86, 263, 375
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	3 cut(s)	316, 332, 334
NciI	CCSGG	2 cut(s)	86, 375
NdeII	GATC	4 cut(s)	178, 182, 285, 426
NlaIV	GGNNCC	1 cut(s)	254
NmeAIII	GCCGAG	2 cut(s)	287, 492
NmuCI	GTSAC	1 cut(s)	200
NspV	TTCGAA	1 cut(s)	366
OliI	CACNNNNGTG	1 cut(s)	422
PciSI	GCTCTTC	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 600
PctI	GAATGC	1 cut(s)	71
PdmI	GAANNNNTTC	2 cut(s)	299, 506
PfeI	GAWTC	1 cut(s)	271
PflFI	GACNNNGTC	1 cut(s)	521
PkrI	GCNGC	7 cut(s)	91, 122, 173, 197, 320, 323, 495
Ple19I	CGATCG	1 cut(s)	181
PleI	GAGTC	3 cut(s)	21, 125, 155
PmaCI	CACGTG	1 cut(s)	604
PmlI	CACGTG	1 cut(s)	604
PpsI	GAGTC	3 cut(s)	21, 125, 155
Ppu21I	YACGTR	2 cut(s)	448, 604
Psp6I	CCWGG	1 cut(s)	261
PspCI	CACGTG	1 cut(s)	604
PspFI	CCCAGC	2 cut(s)	324, 379
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	2 cut(s)	247, 280
PstNI	CAGNNNCTG	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	285
PsyI	GACNNNGTC	1 cut(s)	521
PvuI	CGATCG	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	493
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
RseI	CAYNNNNRTG	2 cut(s)	422, 450
SapI	GCTCTTC	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	7 cut(s)	90, 121, 172, 196, 319, 322, 494
Sau3AI	GATC	4 cut(s)	178, 182, 285, 426
Sau96I	GGNCC	2 cut(s)	247, 280
SchI	GAGTC	3 cut(s)	21, 125, 155
ScrFI	CCNGG	3 cut(s)	86, 263, 375
SduI	GDGCHC	1 cut(s)	552
SexAI	ACCWGGT	1 cut(s)	261
SfaNI	GCATC	1 cut(s)	364
SfuI	TTCGAA	1 cut(s)	366
SinI	GGWCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	2 cut(s)	422, 450
Sse9I	AATT	1 cut(s)	486
StyD4I	CCNGG	3 cut(s)	84, 261, 373
TaaI	ACNGT	1 cut(s)	350
TaiI	ACGT	4 cut(s)	396, 450, 597, 606
TaqI	TCGA	2 cut(s)	181, 366
TasI	AATT	1 cut(s)	486
TauI	GCSGC	5 cut(s)	92, 123, 174, 198, 321
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	2 cut(s)	321, 493
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	3 cut(s)	153, 199, 551
TspGWI	ACGGA	3 cut(s)	225, 356, 530
Tth111I	GACNNNGTC	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	280
XagI	CCTNNNNNAGG	1 cut(s)	260
XapI	RAATTY	1 cut(s)	486
XmnI	GAANNNNTTC	2 cut(s)	299, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.