Rh1AG393600

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004776
Physical Location & Seq
Forward (+)
62218701 .. 62219900
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG393600.1

Sequence Viewer

Length: 615 bp
ATGGCTTCCTCCCTAGCCCTCCGCCGATTCCTCTCCTCCAATCTCCTCCCCAAACCGCTCTCCTCCTCCGCATTCCGCCCAATCCGCGCCGCCAAACTCTTCAACACCAACGCCTCCCGCCACTACGACTCCGATGAAAGCGACGAAACCGACCTGGACTCCTACCGCCGCCACGATTGCTCTCTCCCTCGCCGCCACGACAACTTCATCTCCGATGTGTTTGCTCCTCCTCCGTTCTCGGTGGACCGGAACCTGAGCCAGGTGCTGAATCTGGTGGACCAGATCTTGGAGAACCCCTTCCTCTCGGCCACGCGCCGCGGCTGGGACGCGCGTGAGACGGAGGACGGTCTGCATCTCCGGTTCGAAATGCCGGGGCTGGGGAAAGACGACGTGAAGGTTTCGGTGGAGAAGAACACTCTGGTGATCAGAGGCGAAGGCGGACACGTGGACGGTGAAGAAGAGCCGAGGAGGTACTCCACCGGAATTCAGCTGCCGGAGAAGATGTTCAAGACGGACGGCGTCAAGGCGGAGATGAAGAACGGCGTGCTGAGGGTGGTTGTGCCGAAGATTAAGGAGGAGGAGAGGAGCGACGTGTTTCACGTGAGGGTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0010035 GO:0010038 GO:0042221 GO:0046686 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

204

Amino Acids

23.21

Weight (kDa)

6.11

Isoelectric Point (pI)

56.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 110 - 203 6.4e-15 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 286
AccBSI CCGCTC 1 cut(s) 58
AccII CGCG 5 cut(s) 87, 313, 318, 329, 331
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 1 cut(s) 483
AcvI CACGTG 2 cut(s) 445, 601
AcyI GRCGYC 1 cut(s) 519
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 4 cut(s) 259, 286, 322, 377
AflIII ACRYGT 2 cut(s) 442, 591
AgsI TTSAA 2 cut(s) 103, 508
AjiI CACGTC 2 cut(s) 391, 592
AjnI CCWGG 2 cut(s) 153, 258
AleI CACNNNNGTG 1 cut(s) 419
AloI GAACNNNNNNTCC 2 cut(s) 488, 520
AluBI AGCT 1 cut(s) 490
AluI AGCT 1 cut(s) 490
Alw26I GTCTC 1 cut(s) 329
AlwNI CAGNNNCTG 1 cut(s) 265
AoxI GGCC 1 cut(s) 306
ApeKI GCWGC 1 cut(s) 490
ApoI RAATTY 1 cut(s) 483
Asp700I GAANNNNTTC 2 cut(s) 296, 503
AspLEI GCGC 3 cut(s) 89, 315, 331
AspS9I GGNCC 2 cut(s) 244, 277
AsuC2I CCSGG 1 cut(s) 372
AsuHPI GGTGA 2 cut(s) 433, 464
AsuII TTCGAA 1 cut(s) 363
AvaII GGWCC 2 cut(s) 244, 277
BbrPI CACGTG 2 cut(s) 445, 601
BbvCI CCTCAGC 1 cut(s) 548
BbvI GCAGC 1 cut(s) 477
BceAI ACGGC 2 cut(s) 532, 556
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BciT130I CCWGG 2 cut(s) 155, 260
BclI TGATCA 1 cut(s) 423
BcnI CCSGG 1 cut(s) 372
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 1 cut(s) 14
BglII AGATCT 1 cut(s) 282
BisI GCNGC 6 cut(s) 90, 169, 193, 316, 319, 491
BlsI GCNGC 6 cut(s) 91, 170, 194, 317, 320, 492
Bme1390I CCNGG 3 cut(s) 155, 260, 372
Bme18I GGWCC 2 cut(s) 244, 277
BmgBI CACGTC 2 cut(s) 391, 592
BmgT120I GGNCC 2 cut(s) 244, 277
BmiI GGNNCC 1 cut(s) 251
BmrFI CCNGG 3 cut(s) 155, 260, 372
BmsI GCATC 1 cut(s) 361
Bpu10I CCTNAGC 2 cut(s) 254, 548
Bpu14I TTCGAA 1 cut(s) 363
BpuMI CCSGG 1 cut(s) 372
BsaAI YACGTR 2 cut(s) 445, 601
BsaHI GRCGYC 1 cut(s) 519
BsaJI CCNNGG 3 cut(s) 316, 371, 464
BsaWI WCCGGW 3 cut(s) 246, 357, 479
BsaXI ACNNNNNCTCC 8 cut(s) 113, 143, 143, 173, 194, 224, 488, 518
Bsc4I CCNNNNNNNGG 4 cut(s) 259, 286, 322, 377
BseBI CCWGG 2 cut(s) 155, 260
BseDI CCNNGG 3 cut(s) 316, 371, 464
BseLI CCNNNNNNNGG 4 cut(s) 259, 286, 322, 377
BseMII CTCAG 2 cut(s) 245, 539
BseXI GCAGC 1 cut(s) 477
BseYI CCCAGC 2 cut(s) 321, 376
Bsh1236I CGCG 5 cut(s) 87, 313, 318, 329, 331
BshFI GGCC 1 cut(s) 308
BsiSI CCGG 5 cut(s) 247, 358, 371, 480, 494
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 4 cut(s) 259, 286, 322, 377
BsmAI GTCTC 1 cut(s) 329
BsmBI CGTCTC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 338
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 1 cut(s) 308
Bsp119I TTCGAA 1 cut(s) 363
Bsp143I GATC 2 cut(s) 282, 423
BspANI GGCC 1 cut(s) 308
BspCNI CTCAG 2 cut(s) 246, 540
BspFNI CGCG 5 cut(s) 87, 313, 318, 329, 331
BspLI GGNNCC 1 cut(s) 251
BspQI GCTCTTC 1 cut(s) 453
BspT104I TTCGAA 1 cut(s) 363
BsrBI CCGCTC 1 cut(s) 58
BssECI CCNNGG 3 cut(s) 316, 371, 464
BssMI GATC 2 cut(s) 282, 423
BssNI GRCGYC 1 cut(s) 519
Bst2UI CCWGG 2 cut(s) 155, 260
Bst4CI ACNGT 2 cut(s) 347, 452
Bst6I CTCTTC 2 cut(s) 104, 453
BstACI GRCGYC 1 cut(s) 519
BstBAI YACGTR 2 cut(s) 445, 601
BstBI TTCGAA 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 545
BstDEI CTNAG 2 cut(s) 254, 548
BstDSI CCRYGG 1 cut(s) 316
BstENI CCTNNNNNAGG 1 cut(s) 257
BstFNI CGCG 5 cut(s) 87, 313, 318, 329, 331
BstHHI GCGC 3 cut(s) 89, 315, 331
BstKTI GATC 2 cut(s) 285, 426
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 2 cut(s) 282, 423
BstMWI GCNNNNNNNGC 2 cut(s) 84, 177
BstNI CCWGG 2 cut(s) 155, 260
BstSCI CCNGG 3 cut(s) 153, 258, 370
BstUI CGCG 5 cut(s) 87, 313, 318, 329, 331
BstV1I GCAGC 1 cut(s) 477
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BsuRI GGCC 1 cut(s) 308
BtgI CCRYGG 1 cut(s) 316
BtrI CACGTC 2 cut(s) 391, 592
Cac8I GCNNGC 1 cut(s) 545
CaiI CAGNNNCTG 1 cut(s) 265
CfoI GCGC 3 cut(s) 89, 315, 331
Cfr13I GGNCC 2 cut(s) 244, 277
Cfr42I CCGCGG 1 cut(s) 319
CseI GACGC 2 cut(s) 335, 508
Csp6I GTAC 1 cut(s) 472
CviJI RGCY 8 cut(s) 5, 17, 258, 308, 321, 376, 463, 490
CviKI_1 RGCY 8 cut(s) 5, 17, 258, 308, 321, 376, 463, 490
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 2 cut(s) 254, 548
DpnI GATC 2 cut(s) 284, 425
DpnII GATC 2 cut(s) 282, 423
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 2 cut(s) 104, 453
EarI CTCTTC 2 cut(s) 104, 453
EciI GGCGGA 4 cut(s) 11, 65, 453, 542
Eco47I GGWCC 2 cut(s) 244, 277
Eco72I CACGTG 2 cut(s) 445, 601
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoRI GAATTC 1 cut(s) 483
EcoRII CCWGG 2 cut(s) 153, 258
Esp3I CGTCTC 1 cut(s) 329
FaqI GGGAC 1 cut(s) 338
FauI CCCGC 1 cut(s) 125
FbaI TGATCA 1 cut(s) 423
Fnu4HI GCNGC 6 cut(s) 90, 169, 193, 316, 319, 491
Fsp4HI GCNGC 6 cut(s) 90, 169, 193, 316, 319, 491
FspBI CTAG 1 cut(s) 14
GlaI GCGC 3 cut(s) 88, 314, 330
GluI GCNGC 6 cut(s) 90, 169, 193, 316, 319, 491
GsaI CCCAGC 2 cut(s) 325, 380
HaeIII GGCC 1 cut(s) 308
HapII CCGG 5 cut(s) 247, 358, 371, 480, 494
HgaI GACGC 2 cut(s) 335, 508
HhaI GCGC 3 cut(s) 89, 315, 331
Hin1I GRCGYC 1 cut(s) 519
Hin6I GCGC 3 cut(s) 87, 313, 329
HinP1I GCGC 3 cut(s) 87, 313, 329
HinfI GANTC 4 cut(s) 27, 128, 158, 268
HpaII CCGG 5 cut(s) 247, 358, 371, 480, 494
HphI GGTGA 2 cut(s) 433, 464
Hpy166II GTNNAC 3 cut(s) 244, 277, 448
Hpy188I TCNGA 3 cut(s) 133, 214, 428
Hpy188III TCNNGA 1 cut(s) 508
Hpy8I GTNNAC 3 cut(s) 244, 277, 448
Hpy99I CGWCG 3 cut(s) 146, 392, 593
HpyAV CCTTC 3 cut(s) 307, 388, 428
HpyCH4III ACNGT 2 cut(s) 347, 452
HpyCH4IV ACGT 4 cut(s) 390, 444, 591, 600
HpyCH4V TGCA 1 cut(s) 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 177
HpyF3I CTNAG 2 cut(s) 254, 548
HpySE526I ACGT 4 cut(s) 390, 444, 591, 600
Hsp92I GRCGYC 1 cut(s) 519
HspAI GCGC 3 cut(s) 87, 313, 329
Ksp22I TGATCA 1 cut(s) 423
KspI CCGCGG 1 cut(s) 319
Kzo9I GATC 2 cut(s) 282, 423
LguI GCTCTTC 1 cut(s) 453
LmnI GCTCC 2 cut(s) 229, 585
Lsp1109I GCAGC 1 cut(s) 477
LweI GCATC 1 cut(s) 361
MaeI CTAG 1 cut(s) 14
MaeII ACGT 4 cut(s) 390, 444, 591, 600
MalI GATC 2 cut(s) 284, 425
MbiI CCGCTC 1 cut(s) 58
MboI GATC 2 cut(s) 282, 423
MboII GAAGA 7 cut(s) 91, 421, 467, 470, 511, 547, 577
MflI RGATCY 1 cut(s) 282
MluCI AATT 1 cut(s) 483
MlyI GAGTC 2 cut(s) 122, 152
MroXI GAANNNNTTC 2 cut(s) 296, 503
MseI TTAA 1 cut(s) 570
MslI CAYNNNNRTG 1 cut(s) 419
MspA1I CMGCKG 2 cut(s) 318, 490
MspI CCGG 5 cut(s) 247, 358, 371, 480, 494
MspR9I CCNGG 3 cut(s) 155, 260, 372
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 2 cut(s) 155, 260
MvnI CGCG 5 cut(s) 87, 313, 318, 329, 331
MwoI GCNNNNNNNGC 2 cut(s) 84, 177
NciI CCSGG 1 cut(s) 372
NdeII GATC 2 cut(s) 282, 423
NlaIV GGNNCC 1 cut(s) 251
NmeAIII GCCGAG 2 cut(s) 284, 489
NspV TTCGAA 1 cut(s) 363
OliI CACNNNNGTG 1 cut(s) 419
PciSI GCTCTTC 1 cut(s) 453
PcsI WCGNNNNNNNCGW 1 cut(s) 597
PctI GAATGC 1 cut(s) 71
PdmI GAANNNNTTC 2 cut(s) 296, 503
PfeI GAWTC 2 cut(s) 27, 268
PflFI GACNNNGTC 1 cut(s) 518
PflMI CCANNNNNTGG 1 cut(s) 286
PkrI GCNGC 6 cut(s) 91, 170, 194, 317, 320, 492
PleI GAGTC 2 cut(s) 122, 152
PmaCI CACGTG 2 cut(s) 445, 601
PmlI CACGTG 2 cut(s) 445, 601
PpsI GAGTC 2 cut(s) 122, 152
Ppu21I YACGTR 2 cut(s) 445, 601
Psp6I CCWGG 2 cut(s) 153, 258
PspCI CACGTG 2 cut(s) 445, 601
PspFI CCCAGC 2 cut(s) 321, 376
PspGI CCWGG 2 cut(s) 153, 258
PspN4I GGNNCC 1 cut(s) 251
PspPI GGNCC 2 cut(s) 244, 277
PstNI CAGNNNCTG 1 cut(s) 265
PsuI RGATCY 1 cut(s) 282
PsyI GACNNNGTC 1 cut(s) 518
PvuII CAGCTG 1 cut(s) 490
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
RseI CAYNNNNRTG 1 cut(s) 419
SacII CCGCGG 1 cut(s) 319
SapI GCTCTTC 1 cut(s) 453
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 6 cut(s) 90, 169, 193, 316, 319, 491
Sau3AI GATC 2 cut(s) 282, 423
Sau96I GGNCC 2 cut(s) 244, 277
SchI GAGTC 2 cut(s) 122, 152
ScrFI CCNGG 3 cut(s) 155, 260, 372
SfaNI GCATC 1 cut(s) 361
Sfr303I CCGCGG 1 cut(s) 319
SfuI TTCGAA 1 cut(s) 363
SgrBI CCGCGG 1 cut(s) 319
SinI GGWCC 2 cut(s) 244, 277
SmiMI CAYNNNNRTG 1 cut(s) 419
Sse9I AATT 1 cut(s) 483
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 3 cut(s) 153, 258, 370
TaaI ACNGT 2 cut(s) 347, 452
TaiI ACGT 4 cut(s) 393, 447, 594, 603
TaqI TCGA 1 cut(s) 363
TasI AATT 1 cut(s) 483
TauI GCSGC 5 cut(s) 92, 171, 195, 318, 321
TfiI GAWTC 2 cut(s) 27, 268
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TseI GCWGC 1 cut(s) 490
TspDTI ATGAA 3 cut(s) 150, 196, 548
TspGWI ACGGA 3 cut(s) 222, 353, 527
Tth111I GACNNNGTC 1 cut(s) 518
Van91I CCANNNNNTGG 1 cut(s) 286
VpaK11BI GGWCC 2 cut(s) 244, 277
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 1 cut(s) 483
XmnI GAANNNNTTC 2 cut(s) 296, 503
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.