AT4G26930
MYB Family

myb domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003638
Physical Location & Seq
Forward (+)
13527578 .. 13529429
1852 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26930.1

Sequence Viewer

Length: 1170 bp
ATGATCGTGTACGGTGGGGGAGCATCCGAGGACGGTGAAGGTGGAGGGGTGGTTCTGAAGAAAGGGCCATGGACGGTGGCCGAGGACGAGACACTGGCGGCTTACGTACGGGAATACGGTGAAGGGAACTGGAATTCTGTTCAGAAGAAGACATGGCTGGCTAGGTGTGGCAAGAGCTGCCGCCTCCGCTGGGCTAACCACTTACGACCTAATCTCAGGAAAGGCTCCTTCACCCCCGAGGAAGAACGTCTCATCATACAACTCCACTCTCAGCTAGGCAACAAATGGGCTCGCATGGCTGCTCAGTTACCAGGCAGAACAGATAACGAGATCAAGAACTACTGGAACACGAGGTTGAAACGCTTCCAACGCCAAGGCCTCCCTCTCTACCCTCCAGAATATTCCCAAAACAATCATCAACAACAAATGTATCCTCAACAGCCCTCCTCACCTCTCCCGTCCCAAACACCTGCTTCTTCCTTTACCTTTCCTCTCCTCCAACCGCCTTCTCTGTGTCCCAAACGTTGTTATAACACTGCCTTCTCTCCCAAGGCCTCATATATTTCTTCTCCAACCAATTTCCTTGTCTCGTCTCCGACCTTTCTTCACACCCATTCCTCTCTTTCCTCCTATCAGTCTACCAATCCGGTTTACTCCATGAAACATGAGCTCTCTTCAAACCAAATTCCATACTCTGCCTCTTTAGGAGTCTATCAAGTAAGCAAGTTCTCAGACAATGGGGATTGTAACCAAAACCTGAACACCGGTTTGCATACAAATACCTGTCAGCTGTTAGAGGATCTTATGGAGGAGGCCGAGGCTCTAGCTGATAGCTTTCGTGCTCCTAAGCGGAGACAAATCATGGCTGCGCTTGAGGACAACAACAACAACAACAACTTTTTCTCGGGAGGTTTCGGACATCGTGTTTCTTCCAACAGTCTATGTTCCTTGCAAGGTTTAACACCAAAGGAAGATGAGTCTCTCCAGATGAACACAATGCAAGATGAGGACATAACAAAGCTTCTTGACTGGGGAAGTGAAAGTGAAGAAATCTCAAACGGGCAATCCTCTGTGATAACAACAGAGAACAACCTTGTCCTTGACGATCACCAGTTCGCTTTTCTGTTTCCAGTTGATGATGACACCAACAACTTGCCAGGGATCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0001558 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009889 GO:0009891 GO:0009893 GO:0009932 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010769 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0040007 GO:0040008 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044212 GO:0044424 GO:0044464 GO:0044703 GO:0044706 GO:0045595 GO:0045893 GO:0045935 GO:0048229 GO:0048232 GO:0048235 GO:0048468 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048609 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0051510 GO:0051704 GO:0055046 GO:0060255 GO:0060284 GO:0060560 GO:0065007 GO:0071840 GO:0080090 GO:0080092 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

389

Amino Acids

43.58

Weight (kDa)

5.64

Isoelectric Point (pI)

49.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 21 - 68 2.8e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 24 - 82 2.3e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 74 - 118 1.7e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 77 - 121 2.3e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 531
AarI CACCTGC 1 cut(s) 478
Acc36I ACCTGC 1 cut(s) 478
AccI GTMKAC 1 cut(s) 638
AciI CCGC 5 cut(s) 98, 181, 187, 503, 850
AclI AACGTT 1 cut(s) 523
AclWI GGATC 2 cut(s) 807, 1169
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 2 cut(s) 133, 684
AcuI CTGAAG 1 cut(s) 77
AfaI GTAC 2 cut(s) 11, 108
AfiI CCNNNNNNNGG 1 cut(s) 190
AgeI ACCGGT 1 cut(s) 764
AgsI TTSAA 2 cut(s) 358, 678
AjnI CCWGG 2 cut(s) 310, 1156
AloI GAACNNNNNNTCC 2 cut(s) 36, 68
AluBI AGCT 7 cut(s) 177, 274, 670, 790, 827, 834, 1021
AluI AGCT 7 cut(s) 177, 274, 670, 790, 827, 834, 1021
Alw21I GWGCWC 2 cut(s) 672, 844
Alw26I GTCTC 6 cut(s) 83, 254, 592, 597, 847, 984
AlwI GGATC 2 cut(s) 807, 1169
Ama87I CYCGRG 2 cut(s) 236, 904
AoxI GGCC 5 cut(s) 65, 78, 376, 552, 813
ApeKI GCWGC 3 cut(s) 177, 299, 866
ApoI RAATTY 2 cut(s) 133, 684
AsiGI ACCGGT 1 cut(s) 764
Asp700I GAANNNNTTC 1 cut(s) 362
AspLEI GCGC 1 cut(s) 871
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 5 cut(s) 47, 131, 223, 441, 1100
AvaI CYCGRG 2 cut(s) 236, 904
BaeI ACNNNNGTAYC 2 cut(s) 413, 446
BanII GRGCYC 2 cut(s) 292, 672
BauI CACGAG 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 2 cut(s) 672, 844
BbvI GCAGC 3 cut(s) 164, 286, 853
BciT130I CCWGG 2 cut(s) 312, 1158
BciVI GTATCC 1 cut(s) 441
BcoDI GTCTC 6 cut(s) 83, 254, 592, 597, 847, 984
BfaI CTAG 4 cut(s) 162, 275, 824, 1168
BfuAI ACCTGC 1 cut(s) 478
BfuI GTATCC 1 cut(s) 441
BisI GCNGC 5 cut(s) 99, 178, 181, 300, 867
BlsI GCNGC 5 cut(s) 100, 179, 182, 301, 868
Bme1390I CCNGG 2 cut(s) 312, 1158
BmeT110I CYCGRG 2 cut(s) 236, 904
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 2 cut(s) 312, 1158
BmrI ACTGGG 1 cut(s) 1039
BmsI GCATC 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 1039
BpiI GAAGAC 1 cut(s) 155
BpmI CTGGAG 2 cut(s) 378, 968
Bpu10I CCTNAGC 1 cut(s) 846
BpuEI CTTGAG 1 cut(s) 893
BsaAI YACGTR 1 cut(s) 106
BsaJI CCNNGG 8 cut(s) 27, 68, 81, 237, 373, 549, 816, 1157
BsaWI WCCGGW 2 cut(s) 646, 764
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse118I RCCGGY 1 cut(s) 764
Bse1I ACTGG 6 cut(s) 99, 134, 347, 1034, 1111, 1130
BseBI CCWGG 2 cut(s) 312, 1158
BseDI CCNNGG 8 cut(s) 27, 68, 81, 237, 373, 549, 816, 1157
BseGI GGATG 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 4 cut(s) 229, 284, 317, 744
BseNI ACTGG 6 cut(s) 99, 134, 347, 1034, 1111, 1130
BseRI GAGGAG 3 cut(s) 436, 485, 824
BseXI GCAGC 3 cut(s) 164, 286, 853
BseYI CCCAGC 1 cut(s) 189
BshFI GGCC 5 cut(s) 67, 80, 378, 554, 815
BshTI ACCGGT 1 cut(s) 764
BsiHKAI GWGCWC 2 cut(s) 672, 844
BsiHKCI CYCGRG 2 cut(s) 236, 904
BsiSI CCGG 2 cut(s) 647, 765
BsiWI CGTACG 1 cut(s) 106
BslFI GGGAC 2 cut(s) 445, 501
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 6 cut(s) 83, 254, 592, 597, 847, 984
BsmBI CGTCTC 2 cut(s) 254, 597
BsmFI GGGAC 2 cut(s) 445, 501
BsnI GGCC 5 cut(s) 67, 80, 378, 554, 815
BsoBI CYCGRG 2 cut(s) 236, 904
Bsp1286I GDGCHC 3 cut(s) 292, 672, 844
Bsp143I GATC 5 cut(s) 3, 330, 799, 1105, 1161
Bsp19I CCATGG 1 cut(s) 68
BspACI CCGC 5 cut(s) 98, 181, 187, 503, 850
BspANI GGCC 5 cut(s) 67, 80, 378, 554, 815
BspCNI CTCAG 4 cut(s) 228, 283, 316, 743
BspLI GGNNCC 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 478
BspPI GGATC 2 cut(s) 807, 1169
BsrFI RCCGGY 1 cut(s) 764
BsrI ACTGG 6 cut(s) 99, 134, 347, 1034, 1111, 1130
BssAI RCCGGY 1 cut(s) 764
BssECI CCNNGG 8 cut(s) 27, 68, 81, 237, 373, 549, 816, 1157
BssMI GATC 5 cut(s) 3, 330, 799, 1105, 1161
BssSI CACGAG 1 cut(s) 349
BssT1I CCWWGG 3 cut(s) 68, 373, 549
Bst2BI CACGAG 1 cut(s) 349
Bst2UI CCWGG 2 cut(s) 312, 1158
Bst4CI ACNGT 5 cut(s) 14, 35, 76, 119, 938
Bst6I CTCTTC 1 cut(s) 679
BstAPI GCANNNNNTGC 1 cut(s) 177
BstBAI YACGTR 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 159, 292
BstDEI CTNAG 5 cut(s) 215, 270, 303, 730, 846
BstDSI CCRYGG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 23
BstHHI GCGC 1 cut(s) 871
BstKTI GATC 5 cut(s) 6, 333, 802, 1108, 1164
BstMAI GTCTC 6 cut(s) 83, 254, 592, 597, 847, 984
BstMBI GATC 5 cut(s) 3, 330, 799, 1105, 1161
BstMWI GCNNNNNNNGC 4 cut(s) 177, 186, 296, 369
BstNI CCWGG 2 cut(s) 312, 1158
BstSCI CCNGG 2 cut(s) 310, 1156
BstSNI TACGTA 1 cut(s) 106
BstV1I GCAGC 3 cut(s) 164, 286, 853
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 2 cut(s) 799, 1161
BstYI RGATCY 2 cut(s) 799, 1161
BsuI GTATCC 1 cut(s) 441
BsuRI GGCC 5 cut(s) 67, 80, 378, 554, 815
BtgI CCRYGG 1 cut(s) 68
BtsCI GGATG 1 cut(s) 23
BtsI GCAGTG 1 cut(s) 534
BtsIMutI CAGTG 2 cut(s) 92, 534
BveI ACCTGC 1 cut(s) 478
Cac8I GCNNGC 2 cut(s) 159, 292
CfoI GCGC 1 cut(s) 871
Cfr10I RCCGGY 1 cut(s) 764
Cfr13I GGNCC 1 cut(s) 65
Csp6I GTAC 2 cut(s) 10, 107
CspAI ACCGGT 1 cut(s) 764
CviAII CATG 6 cut(s) 69, 153, 295, 658, 665, 862
CviQI GTAC 2 cut(s) 10, 107
DdeI CTNAG 5 cut(s) 215, 270, 303, 730, 846
DpnI GATC 5 cut(s) 5, 332, 801, 1107, 1163
DpnII GATC 5 cut(s) 3, 330, 799, 1105, 1161
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 679
EarI CTCTTC 1 cut(s) 679
Ecl136II GAGCTC 1 cut(s) 670
Eco105I TACGTA 1 cut(s) 106
Eco130I CCWWGG 3 cut(s) 68, 373, 549
Eco147I AGGCCT 2 cut(s) 378, 554
Eco24I GRGCYC 2 cut(s) 292, 672
Eco53kI GAGCTC 1 cut(s) 670
Eco57I CTGAAG 1 cut(s) 77
Eco88I CYCGRG 2 cut(s) 236, 904
EcoICRI GAGCTC 1 cut(s) 670
EcoRI GAATTC 1 cut(s) 133
EcoRII CCWGG 2 cut(s) 310, 1156
EcoT14I CCWWGG 3 cut(s) 68, 373, 549
EcoT38I GRGCYC 2 cut(s) 292, 672
ErhI CCWWGG 3 cut(s) 68, 373, 549
Esp3I CGTCTC 2 cut(s) 254, 597
FaeI CATG 6 cut(s) 72, 156, 298, 661, 668, 865
FaqI GGGAC 2 cut(s) 445, 501
FatI CATG 6 cut(s) 68, 152, 294, 657, 664, 861
FblI GTMKAC 1 cut(s) 638
Fnu4HI GCNGC 5 cut(s) 99, 178, 181, 300, 867
FokI GGATG 1 cut(s) 10
FriOI GRGCYC 2 cut(s) 292, 672
Fsp4HI GCNGC 5 cut(s) 99, 178, 181, 300, 867
FspBI CTAG 4 cut(s) 162, 275, 824, 1168
GlaI GCGC 1 cut(s) 870
GluI GCNGC 5 cut(s) 99, 178, 181, 300, 867
GsaI CCCAGC 1 cut(s) 193
GsuI CTGGAG 2 cut(s) 378, 968
HaeIII GGCC 5 cut(s) 67, 80, 378, 554, 815
HapII CCGG 2 cut(s) 647, 765
HhaI GCGC 1 cut(s) 871
Hin1II CATG 6 cut(s) 72, 156, 298, 661, 668, 865
Hin6I GCGC 1 cut(s) 869
HinP1I GCGC 1 cut(s) 869
HindIII AAGCTT 1 cut(s) 1019
HinfI GANTC 2 cut(s) 708, 977
HpaII CCGG 2 cut(s) 647, 765
HphI GGTGA 5 cut(s) 47, 131, 223, 441, 1100
Hpy166II GTNNAC 3 cut(s) 10, 639, 652
Hpy188I TCNGA 6 cut(s) 28, 57, 144, 597, 733, 917
Hpy188III TCNNGA 6 cut(s) 217, 334, 395, 906, 985, 1025
Hpy8I GTNNAC 3 cut(s) 10, 639, 652
HpyAV CCTTC 5 cut(s) 32, 116, 238, 516, 550
HpyCH4III ACNGT 5 cut(s) 14, 35, 76, 119, 938
HpyCH4IV ACGT 3 cut(s) 105, 247, 523
HpyCH4V TGCA 3 cut(s) 772, 952, 1000
HpyF10VI GCNNNNNNNGC 4 cut(s) 177, 186, 296, 369
HpyF3I CTNAG 5 cut(s) 215, 270, 303, 730, 846
HpySE526I ACGT 3 cut(s) 105, 247, 523
Hsp92II CATG 6 cut(s) 72, 156, 298, 661, 668, 865
HspAI GCGC 1 cut(s) 869
Kzo9I GATC 5 cut(s) 3, 330, 799, 1105, 1161
LmnI GCTCC 3 cut(s) 20, 230, 847
Lsp1109I GCAGC 3 cut(s) 164, 286, 853
LweI GCATC 1 cut(s) 32
MaeI CTAG 4 cut(s) 162, 275, 824, 1168
MaeII ACGT 3 cut(s) 105, 247, 523
MaeIII GTNAC 2 cut(s) 306, 746
MalI GATC 5 cut(s) 5, 332, 801, 1107, 1163
MboI GATC 5 cut(s) 3, 330, 799, 1105, 1161
MflI RGATCY 2 cut(s) 799, 1161
MhlI GDGCHC 3 cut(s) 292, 672, 844
MluCI AATT 3 cut(s) 133, 577, 684
MlyI GAGTC 2 cut(s) 717, 986
MmeI TCCRAC 5 cut(s) 391, 523, 596, 620, 957
MroXI GAANNNNTTC 1 cut(s) 362
MseI TTAA 1 cut(s) 959
MspA1I CMGCKG 2 cut(s) 189, 790
MspI CCGG 2 cut(s) 647, 765
MspR9I CCNGG 2 cut(s) 312, 1158
MvaI CCWGG 2 cut(s) 312, 1158
MwoI GCNNNNNNNGC 4 cut(s) 177, 186, 296, 369
NcoI CCATGG 1 cut(s) 68
NdeII GATC 5 cut(s) 3, 330, 799, 1105, 1161
NlaIII CATG 6 cut(s) 72, 156, 298, 661, 668, 865
NlaIV GGNNCC 1 cut(s) 226
NmeAIII GCCGAG 2 cut(s) 106, 841
PaqCI CACCTGC 1 cut(s) 478
PceI AGGCCT 2 cut(s) 378, 554
PdmI GAANNNNTTC 1 cut(s) 362
Pfl23II CGTACG 1 cut(s) 106
PinAI ACCGGT 1 cut(s) 764
PkrI GCNGC 5 cut(s) 100, 179, 182, 301, 868
PleI GAGTC 2 cut(s) 716, 985
PpsI GAGTC 2 cut(s) 716, 985
Ppu21I YACGTR 1 cut(s) 106
PsiI TTATAA 1 cut(s) 531
Psp124BI GAGCTC 1 cut(s) 672
Psp1406I AACGTT 1 cut(s) 523
Psp6I CCWGG 2 cut(s) 310, 1156
PspFI CCCAGC 1 cut(s) 189
PspGI CCWGG 2 cut(s) 310, 1156
PspLI CGTACG 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 1 cut(s) 65
PsuI RGATCY 2 cut(s) 799, 1161
PvuII CAGCTG 1 cut(s) 790
RsaI GTAC 2 cut(s) 11, 108
RsaNI GTAC 2 cut(s) 10, 107
SacI GAGCTC 1 cut(s) 672
SaqAI TTAA 1 cut(s) 959
SatI GCNGC 5 cut(s) 99, 178, 181, 300, 867
Sau3AI GATC 5 cut(s) 3, 330, 799, 1105, 1161
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 2 cut(s) 717, 986
ScrFI CCNGG 2 cut(s) 312, 1158
SduI GDGCHC 3 cut(s) 292, 672, 844
SfaNI GCATC 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 872
SmoI CTYRAG 1 cut(s) 872
SnaBI TACGTA 1 cut(s) 106
Sse9I AATT 3 cut(s) 133, 577, 684
SseBI AGGCCT 2 cut(s) 378, 554
SsiI CCGC 5 cut(s) 98, 181, 187, 503, 850
SspI AATATT 1 cut(s) 401
SspMI CTAG 4 cut(s) 162, 275, 824, 1168
SstI GAGCTC 1 cut(s) 672
StuI AGGCCT 2 cut(s) 378, 554
StyD4I CCNGG 2 cut(s) 310, 1156
StyI CCWWGG 3 cut(s) 68, 373, 549
TaaI ACNGT 5 cut(s) 14, 35, 76, 119, 938
TaiI ACGT 3 cut(s) 108, 250, 526
TasI AATT 3 cut(s) 133, 577, 684
TauI GCSGC 2 cut(s) 101, 183
Tru1I TTAA 1 cut(s) 959
Tru9I TTAA 1 cut(s) 959
TscAI CASTG 2 cut(s) 99, 541
TseI GCWGC 3 cut(s) 177, 299, 866
TspDTI ATGAA 2 cut(s) 674, 1004
TspRI CASTG 2 cut(s) 99, 541
XapI RAATTY 2 cut(s) 133, 684
XmiI GTMKAC 1 cut(s) 638
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 4 cut(s) 162, 275, 824, 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.