Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002908.1

Orthogroup ID

OG0003638

Physical Location & Seq

Genomic Coordinates Forward (+)

18873 .. 23235

Gene Structure 4363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002908.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

atgtttgaattcaaatctcagttacccatagctaaatttcgattccgccaaatgcaacacaccactgtcgaagatctgaagaaccctagaggttacccattaggttttctactgcctctgaaccagaaaaccccaaatcaatcagatcacacaataaacgcaattttaggtctcagaaacgaaagaagaagacgaggaagaccaggcatcggaaattccaagagagagggggttgttacctgtgagatttttggatttgatgttggcttgagcccgctacccggacgaacagataatgaaataaagaattattggaacacaagggtgaagaggcgacaacgtcaaggcctacctctatatcctcatgatattaaacaatcccaacaacaatctcattcccagtcacaaccaaccactttaaccattcccacaggactaacacagtccagcacaagcaccggaatgccacccacaggccaaactttttccttccaagttcaaaattcatcatcatcgcagactcatcaactccctctcatagcccctactgacccatatcactctgtcccctcctctcccaaatccgccctcagtcattcccttcctctaatatttgatcaccccaccgactcttccttcacattccaccgccccactcccatcctcggagccccattgcggtacaaaaggcaccccgacagccgtgacatctcccctcccgtttccccaagcctacaacgaagcacctctattttacgagccagctccatgcccgacatatcttacaatcagcatattgcagcaggaaacatgtccatgcctgacatgtcctcttttcagtttcagccaacacgtcatttcaatggttcgttgccaccattgccgcgttccaccagcgtcccgtttgattttggggacagtaccaggtcactttattcggtgaagtcatcagagcttccttcaagccgagtatcccaaacacagtcacagtctgatcagatcaccaatgataacaagctaaatgtggtggctgccgctagtgagactcattacagtaatgtgttggaagagttgttacgagaagctgaggcattggcttctgttgcgactccaaggaaagcatcaattggtctagggggacgttcttttgaagacaaacatgttttggatggttatggccgttggctgcaatctacaggttccacaaataactctttatcagatatgaagtcaatccaggatcatcatgaccacatgaataattccatgcctgaagacttgtcgaagctgttcagttttattccttcaaccgagccggtctccgattggtacagtactgatagtggggaattctccaatggcggccaatcttctggaataaccgaggctagttttgagtttgacatgcagcaacatatggcttcaatgttccctgttgttgcctcatcaacagaccatgacagagttcctaacagttgggacaacttgccaggaatgtgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

500

Amino Acids

55.52

Weight (kDa)

7.36

Isoelectric Point (pI)

68.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26930
fragaria_vesca	FvH4_3g22960 FvH4_3g22960 FvH4_3g22960 FvH4_3g22960 FvH4_3g22970 FvH4_3g22970
malus_domestica	MD05G1136100.v1.1 MD11G1215600.v1.1 MD11G1216000.v1.1
prunus_persica	Prupe.4G215500_v2.0.a1 Prupe.4G215500_v2.0.a1 Prupe.4G215600_v2.0.a1
pyrus_communis	pycom11g19020
rosa_chinensis	RchiOBHm_Chr5g0040211 RchiOBHm_Chr5g0040281
rosa_laevigata	RLG00000033968 RLG00000033970
rosa_multiflora	Rmu_co8296705.1_g000001 Rmu_co8344811.1_g000001 Rmu_sc0002908.1_g000007 Rmu_sc0010162.1_g000003 Rmu_sc0014485.1_g000006
rosa_roxburghii	Rroxscaffold_1G00041020 Rroxscaffold_1G00041030
rosa_rugosa	Rorug05G0184400 Rorug05G0184500
rosa_samantha	Rh5AG271400 Rh5AG271500 Rh5BG274600 Rh5BG275400 Rh5CG307600 Rh5DG282900 Rh5DG283600
rosa_wichuraiana	Rw5G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	690
AccII	CGCG	1 cut(s)	886
AciI	CCGC	8 cut(s)	46, 275, 585, 649, 679, 884, 1035, 1362
AclWI	GGATC	1 cut(s)	1248
AcoI	YGGCCR	2 cut(s)	1177, 1363
AcsI	RAATTY	5 cut(s)	8, 35, 214, 502, 1349
AcuI	CTGAAG	2 cut(s)	98, 1293
AfaI	GTAC	4 cut(s)	683, 922, 1331, 1336
AfiI	CCNNNNNNNGG	5 cut(s)	209, 281, 473, 665, 678
AflIII	ACRYGT	4 cut(s)	810, 825, 851, 1159
AgsI	TTSAA	8 cut(s)	8, 13, 500, 862, 963, 1151, 1308, 1425
AjiI	CACGTC	1 cut(s)	854
AjnI	CCWGG	4 cut(s)	202, 923, 1236, 1489
AleI	CACNNNNGTG	1 cut(s)	323
AluBI	AGCT	6 cut(s)	32, 765, 955, 1018, 1085, 1288
AluI	AGCT	6 cut(s)	32, 765, 955, 1018, 1085, 1288
Alw26I	GTCTC	3 cut(s)	176, 1037, 1324
AlwI	GGATC	1 cut(s)	1248
AoxI	GGCC	4 cut(s)	346, 475, 1177, 1363
ApeKI	GCWGC	4 cut(s)	800, 1031, 1186, 1408
ApoI	RAATTY	5 cut(s)	8, 35, 214, 502, 1349
Asp700I	GAANNNNTTC	1 cut(s)	1289
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	4 cut(s)	337, 611, 952, 994
BanI	GGYRCC	1 cut(s)	690
BanII	GRGCYC	2 cut(s)	275, 673
BarI	GAAGNNNNNNTAC	2 cut(s)	1059, 1091
BbsI	GAAGAC	4 cut(s)	196, 205, 1158, 1281
BbvCI	CCTCAGC	1 cut(s)	1086
BbvI	GCAGC	4 cut(s)	812, 1018, 1173, 1420
BccI	CCATC	2 cut(s)	668, 1163
BceAI	ACGGC	2 cut(s)	687, 1164
BciT130I	CCWGG	4 cut(s)	204, 925, 1238, 1491
BciVI	GTATCC	1 cut(s)	982
BclI	TGATCA	2 cut(s)	616, 994
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	3 cut(s)	176, 1037, 1324
BfaI	CTAG	4 cut(s)	87, 1038, 1133, 1389
BfmI	CTRYAG	1 cut(s)	1194
BfuI	GTATCC	1 cut(s)	982
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	7 cut(s)	801, 884, 1032, 1035, 1187, 1363, 1409
BlsI	GCNGC	7 cut(s)	802, 885, 1033, 1036, 1188, 1364, 1410
BmcAI	AGTACT	1 cut(s)	1336
Bme1390I	CCNGG	5 cut(s)	204, 282, 925, 1238, 1491
BmgBI	CACGTC	1 cut(s)	854
BmiI	GGNNCC	3 cut(s)	670, 692, 1201
BmrFI	CCNGG	5 cut(s)	204, 282, 925, 1238, 1491
BmrI	ACTGGG	1 cut(s)	394
BmsI	GCATC	2 cut(s)	216, 1130
BmuI	ACTGGG	1 cut(s)	394
BpiI	GAAGAC	4 cut(s)	196, 205, 1158, 1281
BplI	GAGNNNNNCTC	2 cut(s)	1304, 1336
Bpu10I	CCTNAGC	1 cut(s)	1086
BpuEI	CTTGAG	1 cut(s)	289
BpuMI	CCSGG	1 cut(s)	282
BsaI	GGTCTC	2 cut(s)	176, 1324
BsaJI	CCNNGG	3 cut(s)	664, 1112, 1383
BsaWI	WCCGGW	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	5 cut(s)	209, 281, 473, 665, 678
Bse118I	RCCGGY	1 cut(s)	1315
Bse1I	ACTGG	1 cut(s)	400
Bse3DI	GCAATG	2 cut(s)	674, 878
BseBI	CCWGG	4 cut(s)	204, 925, 1238, 1491
BseDI	CCNNGG	3 cut(s)	664, 1112, 1383
BseGI	GGATG	2 cut(s)	660, 1174
BseLI	CCNNNNNNNGG	5 cut(s)	209, 281, 473, 665, 678
BseMI	GCAATG	2 cut(s)	674, 878
BseMII	CTCAG	4 cut(s)	32, 187, 604, 1077
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	1 cut(s)	562
BseXI	GCAGC	4 cut(s)	812, 1018, 1173, 1420
Bsh1236I	CGCG	1 cut(s)	886
BshFI	GGCC	4 cut(s)	348, 477, 1179, 1365
BshNI	GGYRCC	1 cut(s)	690
BsiSI	CCGG	3 cut(s)	282, 459, 1316
BslFI	GGGAC	5 cut(s)	551, 884, 929, 1152, 1493
BslI	CCNNNNNNNGG	5 cut(s)	209, 281, 473, 665, 678
BsmAI	GTCTC	3 cut(s)	176, 1037, 1324
BsmFI	GGGAC	5 cut(s)	551, 884, 929, 1152, 1493
BsmI	GAATGC	1 cut(s)	468
BsnI	GGCC	4 cut(s)	348, 477, 1179, 1365
Bso31I	GGTCTC	2 cut(s)	176, 1324
Bsp1286I	GDGCHC	2 cut(s)	275, 673
Bsp143I	GATC	6 cut(s)	73, 145, 616, 994, 999, 1240
BspACI	CCGC	8 cut(s)	46, 275, 585, 649, 679, 884, 1035, 1362
BspANI	GGCC	4 cut(s)	348, 477, 1179, 1365
BspCNI	CTCAG	4 cut(s)	31, 186, 603, 1078
BspFNI	CGCG	1 cut(s)	886
BspHI	TCATGA	2 cut(s)	364, 1246
BspLI	GGNNCC	3 cut(s)	670, 692, 1201
BspPI	GGATC	1 cut(s)	1248
BspT107I	GGYRCC	1 cut(s)	690
BspTNI	GGTCTC	2 cut(s)	176, 1324
BsrDI	GCAATG	2 cut(s)	674, 878
BsrFI	RCCGGY	1 cut(s)	1315
BsrI	ACTGG	1 cut(s)	400
BssAI	RCCGGY	1 cut(s)	1315
BssECI	CCNNGG	3 cut(s)	664, 1112, 1383
BssMI	GATC	6 cut(s)	73, 145, 616, 994, 999, 1240
BssT1I	CCWWGG	1 cut(s)	1112
Bst2UI	CCWGG	4 cut(s)	204, 925, 1238, 1491
Bst4CI	ACNGT	8 cut(s)	67, 444, 920, 984, 990, 1055, 1334, 1475
Bst6I	CTCTTC	3 cut(s)	323, 637, 1062
BstC8I	GCNNGC	2 cut(s)	275, 763
BstDEI	CTNAG	4 cut(s)	18, 173, 590, 1086
BstEII	GGTNACC	1 cut(s)	92
BstF5I	GGATG	2 cut(s)	660, 1174
BstFNI	CGCG	1 cut(s)	886
BstKTI	GATC	6 cut(s)	76, 148, 619, 997, 1002, 1243
BstMAI	GTCTC	3 cut(s)	176, 1037, 1324
BstMBI	GATC	6 cut(s)	73, 145, 616, 994, 999, 1240
BstMWI	GCNNNNNNNGC	2 cut(s)	880, 1103
BstNI	CCWGG	4 cut(s)	204, 925, 1238, 1491
BstNSI	RCATGY	4 cut(s)	814, 829, 1163, 1408
BstPI	GGTNACC	1 cut(s)	92
BstSCI	CCNGG	5 cut(s)	202, 280, 923, 1236, 1489
BstSFI	CTRYAG	1 cut(s)	1194
BstUI	CGCG	1 cut(s)	886
BstV1I	GCAGC	4 cut(s)	812, 1018, 1173, 1420
BstV2I	GAAGAC	4 cut(s)	196, 205, 1158, 1281
BstX2I	RGATCY	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	1373
BstYI	RGATCY	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	982
BsuRI	GGCC	4 cut(s)	348, 477, 1179, 1365
BtgZI	GCGATG	1 cut(s)	498
BtrI	CACGTC	1 cut(s)	854
BtsCI	GGATG	2 cut(s)	660, 1174
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	2 cut(s)	275, 763
CciI	TCATGA	2 cut(s)	364, 1246
Cfr10I	RCCGGY	1 cut(s)	1315
CseI	GACGC	1 cut(s)	886
CsiI	ACCWGGT	1 cut(s)	923
Csp6I	GTAC	4 cut(s)	682, 921, 1330, 1335
CviQI	GTAC	4 cut(s)	682, 921, 1330, 1335
DdeI	CTNAG	4 cut(s)	18, 173, 590, 1086
DpnI	GATC	6 cut(s)	75, 147, 618, 996, 1001, 1242
DpnII	GATC	6 cut(s)	73, 145, 616, 994, 999, 1240
EaeI	YGGCCR	2 cut(s)	1177, 1363
Eam1104I	CTCTTC	3 cut(s)	323, 637, 1062
EarI	CTCTTC	3 cut(s)	323, 637, 1062
EciI	GGCGGA	2 cut(s)	35, 574
Eco130I	CCWWGG	1 cut(s)	1112
Eco147I	AGGCCT	1 cut(s)	348
Eco24I	GRGCYC	2 cut(s)	275, 673
Eco31I	GGTCTC	2 cut(s)	176, 1324
Eco57I	CTGAAG	2 cut(s)	98, 1293
Eco91I	GGTNACC	1 cut(s)	92
EcoO65I	GGTNACC	1 cut(s)	92
EcoRI	GAATTC	2 cut(s)	8, 1349
EcoRII	CCWGG	4 cut(s)	202, 923, 1236, 1489
EcoT14I	CCWWGG	1 cut(s)	1112
EcoT38I	GRGCYC	2 cut(s)	275, 673
ErhI	CCWWGG	1 cut(s)	1112
FaqI	GGGAC	5 cut(s)	551, 884, 929, 1152, 1493
FauI	CCCGC	1 cut(s)	282
FauNDI	CATATG	1 cut(s)	1416
FbaI	TGATCA	2 cut(s)	616, 994
Fnu4HI	GCNGC	7 cut(s)	801, 884, 1032, 1035, 1187, 1363, 1409
FokI	GGATG	2 cut(s)	647, 1181
FriOI	GRGCYC	2 cut(s)	275, 673
Fsp4HI	GCNGC	7 cut(s)	801, 884, 1032, 1035, 1187, 1363, 1409
FspBI	CTAG	4 cut(s)	87, 1038, 1133, 1389
GluI	GCNGC	7 cut(s)	801, 884, 1032, 1035, 1187, 1363, 1409
HaeIII	GGCC	4 cut(s)	348, 477, 1179, 1365
HapII	CCGG	3 cut(s)	282, 459, 1316
HgaI	GACGC	1 cut(s)	886
HinfI	GANTC	5 cut(s)	42, 520, 629, 1045, 1108
HpaII	CCGG	3 cut(s)	282, 459, 1316
HphI	GGTGA	4 cut(s)	337, 611, 952, 994
Hpy188III	TCNNGA	3 cut(s)	365, 1247, 1374
HpyAV	CCTTC	5 cut(s)	499, 611, 646, 969, 1314
HpyCH4III	ACNGT	8 cut(s)	67, 444, 920, 984, 990, 1055, 1334, 1475
HpyCH4IV	ACGT	3 cut(s)	340, 853, 1141
HpyCH4V	TGCA	4 cut(s)	55, 800, 1189, 1408
HpyF10VI	GCNNNNNNNGC	2 cut(s)	880, 1103
HpyF3I	CTNAG	4 cut(s)	18, 173, 590, 1086
HpySE526I	ACGT	3 cut(s)	340, 853, 1141
Ksp22I	TGATCA	2 cut(s)	616, 994
Kzo9I	GATC	6 cut(s)	73, 145, 616, 994, 999, 1240
LmnI	GCTCC	2 cut(s)	668, 770
Lsp1109I	GCAGC	4 cut(s)	812, 1018, 1173, 1420
LweI	GCATC	2 cut(s)	216, 1130
MabI	ACCWGGT	1 cut(s)	923
MaeI	CTAG	4 cut(s)	87, 1038, 1133, 1389
MaeII	ACGT	3 cut(s)	340, 853, 1141
MaeIII	GTNAC	8 cut(s)	21, 92, 235, 402, 704, 927, 984, 1074
MalI	GATC	6 cut(s)	75, 147, 618, 996, 1001, 1242
MboI	GATC	6 cut(s)	73, 145, 616, 994, 999, 1240
MfeI	CAATTG	1 cut(s)	1125
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	2 cut(s)	275, 673
MluCI	AATT	9 cut(s)	8, 35, 162, 214, 307, 502, 1125, 1261, 1349
MlyI	GAGTC	4 cut(s)	514, 623, 1039, 1102
MmeI	TCCRAC	1 cut(s)	1044
MroXI	GAANNNNTTC	1 cut(s)	1289
MseI	TTAA	2 cut(s)	372, 419
MslI	CAYNNNNRTG	4 cut(s)	323, 461, 815, 861
MspI	CCGG	3 cut(s)	282, 459, 1316
MspR9I	CCNGG	5 cut(s)	204, 282, 925, 1238, 1491
MunI	CAATTG	1 cut(s)	1125
Mva1269I	GAATGC	1 cut(s)	468
MvaI	CCWGG	4 cut(s)	204, 925, 1238, 1491
MvnI	CGCG	1 cut(s)	886
MwoI	GCNNNNNNNGC	2 cut(s)	880, 1103
NciI	CCSGG	1 cut(s)	282
NdeI	CATATG	1 cut(s)	1416
NdeII	GATC	6 cut(s)	73, 145, 616, 994, 999, 1240
NlaIV	GGNNCC	3 cut(s)	670, 692, 1201
NmeAIII	GCCGAG	1 cut(s)	992
NmuCI	GTSAC	4 cut(s)	402, 704, 927, 984
NspI	RCATGY	4 cut(s)	814, 829, 1163, 1408
OliI	CACNNNNGTG	1 cut(s)	323
PagI	TCATGA	2 cut(s)	364, 1246
PceI	AGGCCT	1 cut(s)	348
PciI	ACATGT	3 cut(s)	810, 825, 1159
PctI	GAATGC	1 cut(s)	468
PdmI	GAANNNNTTC	1 cut(s)	1289
PfeI	GAWTC	1 cut(s)	42
PflFI	GACNNNGTC	1 cut(s)	339
PfoI	TCCNGGA	1 cut(s)	1236
PkrI	GCNGC	7 cut(s)	802, 885, 1033, 1036, 1188, 1364, 1410
PleI	GAGTC	4 cut(s)	514, 623, 1039, 1102
PpsI	GAGTC	4 cut(s)	514, 623, 1039, 1102
PscI	ACATGT	3 cut(s)	810, 825, 1159
Psp6I	CCWGG	4 cut(s)	202, 923, 1236, 1489
PspEI	GGTNACC	1 cut(s)	92
PspGI	CCWGG	4 cut(s)	202, 923, 1236, 1489
PspN4I	GGNNCC	3 cut(s)	670, 692, 1201
PsuI	RGATCY	1 cut(s)	73
PsyI	GACNNNGTC	1 cut(s)	339
RsaI	GTAC	4 cut(s)	683, 922, 1331, 1336
RsaNI	GTAC	4 cut(s)	682, 921, 1330, 1335
RseI	CAYNNNNRTG	4 cut(s)	323, 461, 815, 861
SaqAI	TTAA	2 cut(s)	372, 419
SatI	GCNGC	7 cut(s)	801, 884, 1032, 1035, 1187, 1363, 1409
Sau3AI	GATC	6 cut(s)	73, 145, 616, 994, 999, 1240
ScaI	AGTACT	1 cut(s)	1336
SchI	GAGTC	4 cut(s)	514, 623, 1039, 1102
ScrFI	CCNGG	5 cut(s)	204, 282, 925, 1238, 1491
SduI	GDGCHC	2 cut(s)	275, 673
SexAI	ACCWGGT	1 cut(s)	923
SfaNI	GCATC	2 cut(s)	216, 1130
SfcI	CTRYAG	1 cut(s)	1194
SmiMI	CAYNNNNRTG	4 cut(s)	323, 461, 815, 861
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
Sse9I	AATT	9 cut(s)	8, 35, 162, 214, 307, 502, 1125, 1261, 1349
SseBI	AGGCCT	1 cut(s)	348
SsiI	CCGC	8 cut(s)	46, 275, 585, 649, 679, 884, 1035, 1362
SspI	AATATT	1 cut(s)	612
SspMI	CTAG	4 cut(s)	87, 1038, 1133, 1389
StuI	AGGCCT	1 cut(s)	348
StyD4I	CCNGG	5 cut(s)	202, 280, 923, 1236, 1489
StyI	CCWWGG	1 cut(s)	1112
TaaI	ACNGT	8 cut(s)	67, 444, 920, 984, 990, 1055, 1334, 1475
TaiI	ACGT	3 cut(s)	343, 856, 1144
TaqI	TCGA	3 cut(s)	40, 69, 1283
TasI	AATT	9 cut(s)	8, 35, 162, 214, 307, 502, 1125, 1261, 1349
TatI	WGTACW	1 cut(s)	1334
TauI	GCSGC	3 cut(s)	886, 1037, 1365
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	2 cut(s)	372, 419
Tru9I	TTAA	2 cut(s)	372, 419
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	4 cut(s)	402, 704, 927, 984
TseI	GCWGC	4 cut(s)	800, 1031, 1186, 1408
Tsp45I	GTSAC	4 cut(s)	402, 704, 927, 984
TspDTI	ATGAA	4 cut(s)	312, 495, 1241, 1271
TspRI	CASTG	1 cut(s)	70
Tth111I	GACNNNGTC	1 cut(s)	339
XapI	RAATTY	5 cut(s)	8, 35, 214, 502, 1349
XceI	RCATGY	4 cut(s)	814, 829, 1163, 1408
XmnI	GAANNNNTTC	1 cut(s)	1289
XspI	CTAG	4 cut(s)	87, 1038, 1133, 1389
ZrmI	AGTACT	1 cut(s)	1336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.