Rorug05G0184400
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003638
Physical Location & Seq
Reverse (-)
17843257 .. 17845769
2513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0184400.1

Sequence Viewer

Length: 852 bp
ATGGCATCGGCGGCGCCGGCTAACAAGATCGAGCGGGCCCACCTCATGTACCGGGAAGGGAGGTACCAGGAGGCCCTGGGATTCTACACCGAAGCCCTATCCATGGCCAAGACCAAACCCCAGAAGATTGCCCTCCACAGCAATAGAGCCGCTTGCTTCCTCAAGCTTCACGATTTCAAAAAGGCTGCAGAGGAATGTACCTCAGTGCTTGAGCTTGATTACAATCACACTGGAGCATTGATGTTGCGGGCTCAGACCCTGGTGACACTAAAGGAGTACCGCTCAGCACTCTTTGATGTTAATAGGCTCATAGAGTTAAATCCATCATCCGAAGTGTATCAGAACCTTGAAGCCCGTTTAAGGACGCAAGTGTCACTGGCTCCAATACCTGAGTCCGAAGCAGAGCTAGAAGAAGAGGAAGAAGAAGAGGATGAAGCAGAGCCAAATAGATATGGGGAGAGAGAAGAGCAATATATAGGAAAAGAAGATGTAGTACCTTCGAGGGAAGGAAGGGATCAGCTTACTGAGGTTAATAGGACTACTATTGCTGATGTCATCCCACTCAAGACACCAACAAACAAGGACTCTGCTGAACAAGTAAGGGATCCAAAAGAAAACTCTATTAAGACTACTTCCCCAGCTGAAGTTACAGCAGATAACATCAATTTATCCCCTGAAAAAGAAAAGGGATGGCAAGCAATCCCAAAACCGAAGGGACACTCTTCTCTGGACTATGGACGGTGGGACAGTGTGGAAGATGACTCTAGCGAAGATGATGATGATGATGAGGAAGAGTCTCGACCACAGTATCGGTTCCGTGTAAAAACTGTTGGTGTTCGGCCGGTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

283

Amino Acids

32.19

Weight (kDa)

4.83

Isoelectric Point (pI)

55.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANAPC3 PF12895 20 - 97 2.8e-06 Anaphase-promoting complex, cyclosome, subunit 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 370
Acc65I GGTACC 1 cut(s) 63
AccB1I GGYRCC 2 cut(s) 13, 63
AccBSI CCGCTC 2 cut(s) 34, 282
AciI CCGC 5 cut(s) 11, 34, 150, 247, 280
AclWI GGATC 3 cut(s) 522, 599, 612
AcoI YGGCCR 2 cut(s) 105, 839
AcuI CTGAAG 1 cut(s) 663
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 5 cut(s) 50, 65, 199, 278, 495
AfiI CCNNNNNNNGG 2 cut(s) 103, 360
AgsI TTSAA 2 cut(s) 178, 350
AjnI CCWGG 3 cut(s) 66, 75, 258
AluBI AGCT 5 cut(s) 166, 214, 406, 520, 641
AluI AGCT 5 cut(s) 166, 214, 406, 520, 641
Alw26I GTCTC 1 cut(s) 801
AlwI GGATC 3 cut(s) 522, 599, 612
AlwNI CAGNNNCTG 1 cut(s) 259
AoxI GGCC 4 cut(s) 36, 72, 105, 839
ApaI GGGCCC 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 185
Asp718I GGTACC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 3 cut(s) 36, 37, 73
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 274
BaeGI GKGCMC 1 cut(s) 40
BaeI ACNNNNGTAYC 2 cut(s) 791, 824
BalI TGGCCA 1 cut(s) 107
BamHI GGATCC 1 cut(s) 604
BanI GGYRCC 2 cut(s) 13, 63
BanII GRGCYC 2 cut(s) 40, 253
BarI GAAGNNNNNNTAC 2 cut(s) 477, 509
BbvI GCAGC 1 cut(s) 172
BccI CCATC 2 cut(s) 331, 684
BciT130I CCWGG 3 cut(s) 68, 77, 260
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 801
BfaI CTAG 2 cut(s) 407, 765
BfmI CTRYAG 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 17
BisI GCNGC 3 cut(s) 12, 150, 186
BlpI GCTNAGC 1 cut(s) 283
BlsI GCNGC 3 cut(s) 13, 151, 187
Bme1390I CCNGG 4 cut(s) 53, 68, 77, 260
BmgT120I GGNCC 3 cut(s) 36, 37, 73
BmiI GGNNCC 6 cut(s) 15, 38, 65, 381, 606, 815
BmrFI CCNGG 4 cut(s) 53, 68, 77, 260
BmsI GCATC 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 266, 298
BpmI CTGGAG 1 cut(s) 252
Bpu1102I GCTNAGC 1 cut(s) 283
BpuEI CTTGAG 3 cut(s) 146, 230, 548
BpuMI CCSGG 1 cut(s) 53
BsaBI GATNNNNATC 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 4 cut(s) 75, 76, 102, 258
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 360
Bse118I RCCGGY 2 cut(s) 16, 841
Bse1I ACTGG 2 cut(s) 235, 381
Bse8I GATNNNNATC 1 cut(s) 222
BseBI CCWGG 3 cut(s) 68, 77, 260
BseDI CCNNGG 4 cut(s) 75, 76, 102, 258
BseGI GGATG 4 cut(s) 326, 436, 555, 695
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 2 cut(s) 103, 360
BseMII CTCAG 5 cut(s) 216, 266, 297, 381, 516
BseNI ACTGG 2 cut(s) 235, 381
BseSI GKGCMC 1 cut(s) 40
BseX3I CGGCCG 1 cut(s) 839
BseXI GCAGC 1 cut(s) 172
BseYI CCCAGC 1 cut(s) 637
Bsh1285I CGRYCG 1 cut(s) 842
BshFI GGCC 4 cut(s) 38, 74, 107, 841
BshNI GGYRCC 2 cut(s) 13, 63
BsiEI CGRYCG 1 cut(s) 842
BsiSI CCGG 3 cut(s) 17, 52, 842
BslFI GGGAC 2 cut(s) 729, 758
BslI CCNNNNNNNGG 2 cut(s) 103, 360
BsmAI GTCTC 1 cut(s) 801
BsmFI GGGAC 2 cut(s) 729, 758
BsnI GGCC 4 cut(s) 38, 74, 107, 841
Bsp120I GGGCCC 1 cut(s) 36
Bsp1286I GDGCHC 2 cut(s) 40, 253
Bsp143I GATC 3 cut(s) 27, 514, 604
Bsp1720I GCTNAGC 1 cut(s) 283
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 5 cut(s) 11, 34, 150, 247, 280
BspANI GGCC 4 cut(s) 38, 74, 107, 841
BspCNI CTCAG 5 cut(s) 215, 265, 296, 382, 517
BspLI GGNNCC 6 cut(s) 15, 38, 65, 381, 606, 815
BspMAI CTGCAG 1 cut(s) 190
BspPI GGATC 3 cut(s) 522, 599, 612
BspQI GCTCTTC 1 cut(s) 459
BspT107I GGYRCC 2 cut(s) 13, 63
BsrBI CCGCTC 2 cut(s) 34, 282
BsrFI RCCGGY 2 cut(s) 16, 841
BsrI ACTGG 2 cut(s) 235, 381
BssAI RCCGGY 2 cut(s) 16, 841
BssECI CCNNGG 4 cut(s) 75, 76, 102, 258
BssMI GATC 3 cut(s) 27, 514, 604
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 102
Bst2UI CCWGG 3 cut(s) 68, 77, 260
Bst4CI ACNGT 4 cut(s) 741, 749, 807, 829
Bst6I CTCTTC 5 cut(s) 408, 420, 459, 727, 786
BstACI GRCGYC 1 cut(s) 14
BstC8I GCNNGC 5 cut(s) 18, 36, 154, 249, 696
BstDEI CTNAG 5 cut(s) 202, 252, 283, 390, 525
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 4 cut(s) 326, 436, 555, 695
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 3 cut(s) 30, 517, 607
BstMAI GTCTC 1 cut(s) 801
BstMBI GATC 3 cut(s) 27, 514, 604
BstMCI CGRYCG 1 cut(s) 842
BstMWI GCNNNNNNNGC 2 cut(s) 11, 17
BstNI CCWGG 3 cut(s) 68, 77, 260
BstSCI CCNGG 4 cut(s) 51, 66, 75, 258
BstSFI CTRYAG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 604
BstYI RGATCY 1 cut(s) 604
BstZI CGGCCG 1 cut(s) 839
BsuRI GGCC 4 cut(s) 38, 74, 107, 841
BtgI CCRYGG 1 cut(s) 102
BtsCI GGATG 4 cut(s) 326, 436, 555, 695
BtsIMutI CAGTG 4 cut(s) 210, 228, 374, 754
Cac8I GCNNGC 5 cut(s) 18, 36, 154, 249, 696
CaiI CAGNNNCTG 1 cut(s) 259
CfoI GCGC 1 cut(s) 16
Cfr10I RCCGGY 2 cut(s) 16, 841
Cfr13I GGNCC 3 cut(s) 36, 37, 73
CseI GACGC 1 cut(s) 373
Csp6I GTAC 5 cut(s) 49, 64, 198, 277, 494
CviAII CATG 2 cut(s) 46, 103
CviQI GTAC 5 cut(s) 49, 64, 198, 277, 494
DdeI CTNAG 5 cut(s) 202, 252, 283, 390, 525
DinI GGCGCC 1 cut(s) 15
DpnI GATC 3 cut(s) 29, 516, 606
DpnII GATC 3 cut(s) 27, 514, 604
DrdI GACNNNNNNGTC 1 cut(s) 370
DseDI GACNNNNNNGTC 1 cut(s) 370
EaeI YGGCCR 2 cut(s) 105, 839
EagI CGGCCG 1 cut(s) 839
Eam1104I CTCTTC 5 cut(s) 408, 420, 459, 727, 786
EarI CTCTTC 5 cut(s) 408, 420, 459, 727, 786
EclXI CGGCCG 1 cut(s) 839
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 2 cut(s) 40, 253
Eco52I CGGCCG 1 cut(s) 839
Eco57I CTGAAG 1 cut(s) 663
EcoO109I RGGNCCY 1 cut(s) 73
EcoRII CCWGG 3 cut(s) 66, 75, 258
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 2 cut(s) 40, 253
EgeI GGCGCC 1 cut(s) 15
EheI GGCGCC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 2 cut(s) 49, 106
FaiI YATR 7 cut(s) 47, 104, 311, 453, 474, 476, 735
FaqI GGGAC 2 cut(s) 729, 758
FatI CATG 2 cut(s) 45, 102
FauI CCCGC 2 cut(s) 27, 240
Fnu4HI GCNGC 3 cut(s) 12, 150, 186
FokI GGATG 4 cut(s) 313, 443, 542, 702
FriOI GRGCYC 2 cut(s) 40, 253
Fsp4HI GCNGC 3 cut(s) 12, 150, 186
FspBI CTAG 2 cut(s) 407, 765
GlaI GCGC 1 cut(s) 15
GluI GCNGC 3 cut(s) 12, 150, 186
GsaI CCCAGC 1 cut(s) 641
GsuI CTGGAG 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 17
HaeIII GGCC 4 cut(s) 38, 74, 107, 841
HapII CCGG 3 cut(s) 17, 52, 842
HgaI GACGC 1 cut(s) 373
HhaI GCGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 2 cut(s) 49, 106
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 5 cut(s) 81, 392, 584, 761, 794
HpaII CCGG 3 cut(s) 17, 52, 842
HphI GGTGA 1 cut(s) 274
Hpy188I TCNGA 4 cut(s) 255, 331, 342, 397
Hpy188III TCNNGA 4 cut(s) 170, 565, 728, 798
HpyAV CCTTC 5 cut(s) 50, 500, 504, 507, 706
HpyCH4III ACNGT 4 cut(s) 741, 749, 807, 829
HpyCH4V TGCA 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 17
HpyF3I CTNAG 5 cut(s) 202, 252, 283, 390, 525
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 2 cut(s) 49, 106
HspAI GCGC 1 cut(s) 14
KasI GGCGCC 1 cut(s) 13
KpnI GGTACC 1 cut(s) 67
KroI GCCGGC 1 cut(s) 16
KroNI GCCGGC 1 cut(s) 18
Kzo9I GATC 3 cut(s) 27, 514, 604
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 2 cut(s) 233, 385
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 1 cut(s) 14
MaeI CTAG 2 cut(s) 407, 765
MaeIII GTNAC 3 cut(s) 262, 372, 646
MalI GATC 3 cut(s) 29, 516, 606
MbiI CCGCTC 2 cut(s) 34, 282
MboI GATC 3 cut(s) 27, 514, 604
MflI RGATCY 1 cut(s) 604
MhlI GDGCHC 2 cut(s) 40, 253
MlsI TGGCCA 1 cut(s) 107
MluCI AATT 1 cut(s) 664
MluNI TGGCCA 1 cut(s) 107
Mly113I GGCGCC 1 cut(s) 14
MlyI GAGTC 4 cut(s) 401, 578, 755, 803
Mox20I TGGCCA 1 cut(s) 107
MroNI GCCGGC 1 cut(s) 16
MscI TGGCCA 1 cut(s) 107
MseI TTAA 5 cut(s) 300, 317, 359, 531, 624
Msp20I TGGCCA 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 641
MspI CCGG 3 cut(s) 17, 52, 842
MspR9I CCNGG 4 cut(s) 53, 68, 77, 260
MvaI CCWGG 3 cut(s) 68, 77, 260
MwoI GCNNNNNNNGC 2 cut(s) 11, 17
NaeI GCCGGC 1 cut(s) 18
NarI GGCGCC 1 cut(s) 14
NciI CCSGG 1 cut(s) 53
NcoI CCATGG 1 cut(s) 102
NdeII GATC 3 cut(s) 27, 514, 604
NgoMIV GCCGGC 1 cut(s) 16
NlaIII CATG 2 cut(s) 49, 106
NlaIV GGNNCC 6 cut(s) 15, 38, 65, 381, 606, 815
NmuCI GTSAC 2 cut(s) 262, 372
PasI CCCWGGG 1 cut(s) 76
PciSI GCTCTTC 1 cut(s) 459
PdiI GCCGGC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 81
PkrI GCNGC 3 cut(s) 13, 151, 187
PleI GAGTC 4 cut(s) 400, 578, 755, 802
PluTI GGCGCC 1 cut(s) 17
PpsI GAGTC 4 cut(s) 400, 578, 755, 802
Psp6I CCWGG 3 cut(s) 66, 75, 258
PspFI CCCAGC 1 cut(s) 637
PspGI CCWGG 3 cut(s) 66, 75, 258
PspN4I GGNNCC 6 cut(s) 15, 38, 65, 381, 606, 815
PspOMI GGGCCC 1 cut(s) 36
PspPI GGNCC 3 cut(s) 36, 37, 73
PstI CTGCAG 1 cut(s) 190
PstNI CAGNNNCTG 1 cut(s) 259
PsuI RGATCY 1 cut(s) 604
PvuII CAGCTG 1 cut(s) 641
RsaI GTAC 5 cut(s) 50, 65, 199, 278, 495
RsaNI GTAC 5 cut(s) 49, 64, 198, 277, 494
SapI GCTCTTC 1 cut(s) 459
SaqAI TTAA 5 cut(s) 300, 317, 359, 531, 624
SatI GCNGC 3 cut(s) 12, 150, 186
Sau3AI GATC 3 cut(s) 27, 514, 604
Sau96I GGNCC 3 cut(s) 36, 37, 73
SchI GAGTC 4 cut(s) 401, 578, 755, 803
ScrFI CCNGG 4 cut(s) 53, 68, 77, 260
SduI GDGCHC 2 cut(s) 40, 253
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 186
SfoI GGCGCC 1 cut(s) 15
SmlI CTYRAG 3 cut(s) 161, 209, 563
SmoI CTYRAG 3 cut(s) 161, 209, 563
Sse9I AATT 1 cut(s) 664
SsiI CCGC 5 cut(s) 11, 34, 150, 247, 280
SspDI GGCGCC 1 cut(s) 13
SspMI CTAG 2 cut(s) 407, 765
StyD4I CCNGG 4 cut(s) 51, 66, 75, 258
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 4 cut(s) 741, 749, 807, 829
TaqI TCGA 3 cut(s) 30, 500, 799
TasI AATT 1 cut(s) 664
TauI GCSGC 2 cut(s) 14, 152
TfiI GAWTC 1 cut(s) 81
Tru1I TTAA 5 cut(s) 300, 317, 359, 531, 624
Tru9I TTAA 5 cut(s) 300, 317, 359, 531, 624
TscAI CASTG 4 cut(s) 210, 235, 381, 754
TseFI GTSAC 2 cut(s) 262, 372
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 2 cut(s) 262, 372
TspDTI ATGAA 1 cut(s) 447
TspGWI ACGGA 1 cut(s) 806
TspRI CASTG 4 cut(s) 210, 235, 381, 754
XspI CTAG 2 cut(s) 407, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.