Transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G26930 |
| fragaria_vesca | FvH4_3g22960 FvH4_3g22960 FvH4_3g22960 FvH4_3g22960 FvH4_3g22970 FvH4_3g22970 |
| malus_domestica | MD05G1136100.v1.1 MD11G1215600.v1.1 MD11G1216000.v1.1 |
| prunus_persica | Prupe.4G215500_v2.0.a1 Prupe.4G215500_v2.0.a1 Prupe.4G215600_v2.0.a1 |
| pyrus_communis | pycom11g19020 |
| rosa_chinensis | RchiOBHm_Chr5g0040211 RchiOBHm_Chr5g0040281 |
| rosa_laevigata | RLG00000033968 RLG00000033970 |
| rosa_multiflora | Rmu_co8296705.1_g000001 Rmu_co8344811.1_g000001 Rmu_sc0002908.1_g000007 Rmu_sc0010162.1_g000003 Rmu_sc0014485.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00041020 Rroxscaffold_1G00041030 |
| rosa_rugosa | Rorug05G0184400 Rorug05G0184500 |
| rosa_samantha | Rh5AG271400 Rh5AG271500 Rh5BG274600 Rh5BG275400 Rh5CG307600 Rh5DG282900 Rh5DG283600 |
| rosa_wichuraiana | Rw5G025380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 543 |
| AccB1I | GGYRCC | 1 cut(s) | 677 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 725, 895 |
| AciI | CCGC | 1 cut(s) | 693 |
| AclWI | GGATC | 6 cut(s) | 90, 103, 413, 426, 906, 1110 |
| AcoI | YGGCCR | 3 cut(s) | 368, 1258, 1765 |
| AcsI | RAATTY | 5 cut(s) | 133, 569, 610, 918, 1625 |
| AdeI | CACNNNGTG | 1 cut(s) | 1283 |
| AfaI | GTAC | 5 cut(s) | 107, 199, 234, 970, 1797 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 556, 725, 775, 895, 1267, 1534 |
| AgsI | TTSAA | 6 cut(s) | 128, 166, 356, 842, 1445, 1589 |
| AjnI | CCWGG | 4 cut(s) | 237, 875, 894, 1382 |
| AluBI | AGCT | 9 cut(s) | 581, 674, 715, 802, 1151, 1310, 1429, 1491, 1616 |
| AluI | AGCT | 9 cut(s) | 581, 674, 715, 802, 1151, 1310, 1429, 1491, 1616 |
| Alw21I | GWGCWC | 1 cut(s) | 888 |
| Alw26I | GTCTC | 4 cut(s) | 167, 217, 931, 1696 |
| AlwI | GGATC | 6 cut(s) | 90, 103, 413, 426, 906, 1110 |
| AoxI | GGCC | 7 cut(s) | 368, 989, 1001, 1195, 1258, 1765, 1790 |
| ApeKI | GCWGC | 3 cut(s) | 425, 671, 1343 |
| ApoI | RAATTY | 5 cut(s) | 133, 569, 610, 918, 1625 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1081, 1113, 1238, 1270 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 477 |
| AspS9I | GGNCC | 3 cut(s) | 63, 1494, 1568 |
| AsuHPI | GGTGA | 7 cut(s) | 263, 751, 1121, 1238, 1290, 1607, 1626 |
| AsuII | TTCGAA | 1 cut(s) | 1611 |
| AvaII | GGWCC | 3 cut(s) | 63, 1494, 1568 |
| BaeGI | GKGCMC | 1 cut(s) | 1288 |
| BalI | TGGCCA | 1 cut(s) | 1767 |
| BamHI | GGATCC | 2 cut(s) | 95, 418 |
| BanI | GGYRCC | 1 cut(s) | 677 |
| BbsI | GAAGAC | 2 cut(s) | 872, 1128 |
| Bbv12I | GWGCWC | 1 cut(s) | 888 |
| BbvI | GCAGC | 3 cut(s) | 437, 683, 1355 |
| BceAI | ACGGC | 1 cut(s) | 383 |
| BciT130I | CCWGG | 4 cut(s) | 239, 877, 896, 1384 |
| BcoDI | GTCTC | 4 cut(s) | 167, 217, 931, 1696 |
| BfaI | CTAG | 5 cut(s) | 144, 149, 999, 1044, 1676 |
| BfmI | CTRYAG | 3 cut(s) | 423, 849, 1072 |
| BglII | AGATCT | 1 cut(s) | 974 |
| BisI | GCNGC | 4 cut(s) | 426, 672, 693, 1344 |
| BlsI | GCNGC | 4 cut(s) | 427, 673, 694, 1345 |
| Bme1390I | CCNGG | 4 cut(s) | 239, 877, 896, 1384 |
| Bme18I | GGWCC | 3 cut(s) | 63, 1494, 1568 |
| BmgT120I | GGNCC | 3 cut(s) | 63, 1494, 1568 |
| BmiI | GGNNCC | 5 cut(s) | 64, 97, 420, 679, 982 |
| BmrFI | CCNGG | 4 cut(s) | 239, 877, 896, 1384 |
| BmsI | GCATC | 3 cut(s) | 544, 1004, 1016 |
| BpiI | GAAGAC | 2 cut(s) | 872, 1128 |
| BpmI | CTGGAG | 2 cut(s) | 107, 984 |
| Bpu10I | CCTNAGC | 1 cut(s) | 75 |
| Bpu14I | TTCGAA | 1 cut(s) | 1611 |
| BpuEI | CTTGAG | 3 cut(s) | 582, 970, 1287 |
| BsaBI | GATNNNNATC | 1 cut(s) | 823 |
| BsaI | GGTCTC | 1 cut(s) | 931 |
| BsaJI | CCNNGG | 4 cut(s) | 237, 365, 1176, 1288 |
| BsaWI | WCCGGW | 1 cut(s) | 922 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 480, 510 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 556, 725, 775, 895, 1267, 1534 |
| Bse118I | RCCGGY | 1 cut(s) | 991 |
| Bse1I | ACTGG | 2 cut(s) | 49, 1452 |
| Bse3DI | GCAATG | 1 cut(s) | 666 |
| Bse8I | GATNNNNATC | 1 cut(s) | 823 |
| BseBI | CCWGG | 4 cut(s) | 239, 877, 896, 1384 |
| BseDI | CCNNGG | 4 cut(s) | 237, 365, 1176, 1288 |
| BseGI | GGATG | 4 cut(s) | 535, 885, 1408, 1414 |
| BseJI | GATNNNNATC | 1 cut(s) | 823 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 556, 725, 775, 895, 1267, 1534 |
| BseMI | GCAATG | 1 cut(s) | 666 |
| BseMII | CTCAG | 3 cut(s) | 12, 89, 1002 |
| BseNI | ACTGG | 2 cut(s) | 49, 1452 |
| BseRI | GAGGAG | 1 cut(s) | 791 |
| BseSI | GKGCMC | 1 cut(s) | 1288 |
| BseXI | GCAGC | 3 cut(s) | 437, 683, 1355 |
| BshFI | GGCC | 7 cut(s) | 370, 991, 1003, 1197, 1260, 1767, 1792 |
| BshNI | GGYRCC | 1 cut(s) | 677 |
| BsiHKAI | GWGCWC | 1 cut(s) | 888 |
| BsiSI | CCGG | 2 cut(s) | 923, 992 |
| BslFI | GGGAC | 3 cut(s) | 1194, 1259, 1490 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 556, 725, 775, 895, 1267, 1534 |
| BsmAI | GTCTC | 4 cut(s) | 167, 217, 931, 1696 |
| BsmFI | GGGAC | 3 cut(s) | 1194, 1259, 1490 |
| BsnI | GGCC | 7 cut(s) | 370, 991, 1003, 1197, 1260, 1767, 1792 |
| Bso31I | GGTCTC | 1 cut(s) | 931 |
| Bsp119I | TTCGAA | 1 cut(s) | 1611 |
| Bsp1286I | GDGCHC | 2 cut(s) | 888, 1288 |
| Bsp1407I | TGTACA | 1 cut(s) | 1795 |
| Bsp143I | GATC | 9 cut(s) | 95, 418, 438, 520, 898, 974, 1102, 1295, 1411 |
| BspACI | CCGC | 1 cut(s) | 693 |
| BspANI | GGCC | 7 cut(s) | 370, 991, 1003, 1197, 1260, 1767, 1792 |
| BspCNI | CTCAG | 3 cut(s) | 13, 88, 1003 |
| BspLI | GGNNCC | 5 cut(s) | 64, 97, 420, 679, 982 |
| BspMAI | CTGCAG | 1 cut(s) | 427 |
| BspPI | GGATC | 6 cut(s) | 90, 103, 413, 426, 906, 1110 |
| BspT104I | TTCGAA | 1 cut(s) | 1611 |
| BspT107I | GGYRCC | 1 cut(s) | 677 |
| BspTNI | GGTCTC | 1 cut(s) | 931 |
| BsrDI | GCAATG | 1 cut(s) | 666 |
| BsrFI | RCCGGY | 1 cut(s) | 991 |
| BsrGI | TGTACA | 1 cut(s) | 1795 |
| BsrI | ACTGG | 2 cut(s) | 49, 1452 |
| BssAI | RCCGGY | 1 cut(s) | 991 |
| BssECI | CCNNGG | 4 cut(s) | 237, 365, 1176, 1288 |
| BssMI | GATC | 9 cut(s) | 95, 418, 438, 520, 898, 974, 1102, 1295, 1411 |
| BssT1I | CCWWGG | 1 cut(s) | 1288 |
| Bst2UI | CCWGG | 4 cut(s) | 239, 877, 896, 1384 |
| Bst4CI | ACNGT | 4 cut(s) | 197, 328, 850, 950 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 677 |
| BstAUI | TGTACA | 1 cut(s) | 1795 |
| BstBI | TTCGAA | 1 cut(s) | 1611 |
| BstC8I | GCNNGC | 6 cut(s) | 18, 346, 647, 960, 993, 1005 |
| BstDEI | CTNAG | 4 cut(s) | 21, 75, 482, 1011 |
| BstDSI | CCRYGG | 1 cut(s) | 365 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 554, 1532 |
| BstF5I | GGATG | 4 cut(s) | 535, 885, 1408, 1414 |
| BstKTI | GATC | 9 cut(s) | 98, 421, 441, 523, 901, 977, 1105, 1298, 1414 |
| BstMAI | GTCTC | 4 cut(s) | 167, 217, 931, 1696 |
| BstMBI | GATC | 9 cut(s) | 95, 418, 438, 520, 898, 974, 1102, 1295, 1411 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 587, 602, 677, 1613, 1764 |
| BstNI | CCWGG | 4 cut(s) | 239, 877, 896, 1384 |
| BstNSI | RCATGY | 1 cut(s) | 299 |
| BstSCI | CCNGG | 4 cut(s) | 237, 875, 894, 1382 |
| BstSFI | CTRYAG | 3 cut(s) | 423, 849, 1072 |
| BstSLI | GKGCMC | 1 cut(s) | 1288 |
| BstV1I | GCAGC | 3 cut(s) | 437, 683, 1355 |
| BstV2I | GAAGAC | 2 cut(s) | 872, 1128 |
| BstX2I | RGATCY | 3 cut(s) | 95, 418, 974 |
| BstYI | RGATCY | 3 cut(s) | 95, 418, 974 |
| BsuRI | GGCC | 7 cut(s) | 370, 991, 1003, 1197, 1260, 1767, 1792 |
| BtgI | CCRYGG | 1 cut(s) | 365 |
| BtsCI | GGATG | 4 cut(s) | 535, 885, 1408, 1414 |
| BtsI | GCAGTG | 1 cut(s) | 1368 |
| BtsIMutI | CAGTG | 4 cut(s) | 42, 371, 1368, 1770 |
| Cac8I | GCNNGC | 6 cut(s) | 18, 346, 647, 960, 993, 1005 |
| Cfr10I | RCCGGY | 1 cut(s) | 991 |
| Cfr13I | GGNCC | 3 cut(s) | 63, 1494, 1568 |
| Csp6I | GTAC | 5 cut(s) | 106, 198, 233, 969, 1796 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 753, 788 |
| CviAII | CATG | 9 cut(s) | 220, 296, 606, 902, 932, 1520, 1622, 1706, 1808 |
| CviQI | GTAC | 5 cut(s) | 106, 198, 233, 969, 1796 |
| DdeI | CTNAG | 4 cut(s) | 21, 75, 482, 1011 |
| DpnI | GATC | 9 cut(s) | 97, 420, 440, 522, 900, 976, 1104, 1297, 1413 |
| DpnII | GATC | 9 cut(s) | 95, 418, 438, 520, 898, 974, 1102, 1295, 1411 |
| DraI | TTTAAA | 2 cut(s) | 574, 655 |
| DraIII | CACNNNGTG | 1 cut(s) | 1283 |
| EaeI | YGGCCR | 3 cut(s) | 368, 1258, 1765 |
| Eco130I | CCWWGG | 1 cut(s) | 1288 |
| Eco147I | AGGCCT | 2 cut(s) | 1003, 1792 |
| Eco31I | GGTCTC | 1 cut(s) | 931 |
| Eco47I | GGWCC | 3 cut(s) | 63, 1494, 1568 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 554, 1532 |
| EcoO109I | RGGNCCY | 1 cut(s) | 63 |
| EcoRII | CCWGG | 4 cut(s) | 237, 875, 894, 1382 |
| EcoT14I | CCWWGG | 1 cut(s) | 1288 |
| ErhI | CCWWGG | 1 cut(s) | 1288 |
| FaeI | CATG | 9 cut(s) | 223, 299, 609, 905, 935, 1523, 1625, 1709, 1811 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 699, 731 |
| FaqI | GGGAC | 3 cut(s) | 1194, 1259, 1490 |
| FatI | CATG | 9 cut(s) | 219, 295, 605, 901, 931, 1519, 1621, 1705, 1807 |
| FauNDI | CATATG | 1 cut(s) | 1021 |
| Fnu4HI | GCNGC | 4 cut(s) | 426, 672, 693, 1344 |
| FokI | GGATG | 4 cut(s) | 522, 892, 1415, 1421 |
| Fsp4HI | GCNGC | 4 cut(s) | 426, 672, 693, 1344 |
| FspBI | CTAG | 5 cut(s) | 144, 149, 999, 1044, 1676 |
| GluI | GCNGC | 4 cut(s) | 426, 672, 693, 1344 |
| GsuI | CTGGAG | 2 cut(s) | 107, 984 |
| HaeIII | GGCC | 7 cut(s) | 370, 991, 1003, 1197, 1260, 1767, 1792 |
| HapII | CCGG | 2 cut(s) | 923, 992 |
| Hin1II | CATG | 9 cut(s) | 223, 299, 609, 905, 935, 1523, 1625, 1709, 1811 |
| HindIII | AAGCTT | 1 cut(s) | 713 |
| HinfI | GANTC | 4 cut(s) | 23, 39, 1057, 1804 |
| HpaII | CCGG | 2 cut(s) | 923, 992 |
| HphI | GGTGA | 7 cut(s) | 263, 751, 1121, 1238, 1290, 1607, 1626 |
| Hpy166II | GTNNAC | 1 cut(s) | 1568 |
| Hpy188I | TCNGA | 8 cut(s) | 435, 633, 724, 832, 1012, 1177, 1416, 1814 |
| Hpy188III | TCNNGA | 6 cut(s) | 77, 144, 978, 1268, 1304, 1547 |
| Hpy8I | GTNNAC | 1 cut(s) | 1568 |
| Hpy99I | CGWCG | 1 cut(s) | 836 |
| HpyCH4III | ACNGT | 4 cut(s) | 197, 328, 850, 950 |
| HpyCH4IV | ACGT | 2 cut(s) | 1183, 1573 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 587, 602, 677, 1613, 1764 |
| HpyF3I | CTNAG | 4 cut(s) | 21, 75, 482, 1011 |
| HpySE526I | ACGT | 2 cut(s) | 1183, 1573 |
| Hsp92II | CATG | 9 cut(s) | 223, 299, 609, 905, 935, 1523, 1625, 1709, 1811 |
| KroI | GCCGGC | 1 cut(s) | 991 |
| KroNI | GCCGGC | 1 cut(s) | 993 |
| Kzo9I | GATC | 9 cut(s) | 95, 418, 438, 520, 898, 974, 1102, 1295, 1411 |
| LmnI | GCTCC | 3 cut(s) | 799, 883, 1426 |
| Lsp1109I | GCAGC | 3 cut(s) | 437, 683, 1355 |
| LweI | GCATC | 3 cut(s) | 544, 1004, 1016 |
| MaeI | CTAG | 5 cut(s) | 144, 149, 999, 1044, 1676 |
| MaeII | ACGT | 2 cut(s) | 1183, 1573 |
| MaeIII | GTNAC | 5 cut(s) | 241, 269, 757, 944, 1632 |
| MalI | GATC | 9 cut(s) | 97, 420, 440, 522, 900, 976, 1104, 1297, 1413 |
| MboI | GATC | 9 cut(s) | 95, 418, 438, 520, 898, 974, 1102, 1295, 1411 |
| MfeI | CAATTG | 2 cut(s) | 246, 770 |
| MflI | RGATCY | 3 cut(s) | 95, 418, 974 |
| MhlI | GDGCHC | 2 cut(s) | 888, 1288 |
| MlsI | TGGCCA | 1 cut(s) | 1767 |
| MluNI | TGGCCA | 1 cut(s) | 1767 |
| MlyI | GAGTC | 2 cut(s) | 32, 1066 |
| MmeI | TCCRAC | 3 cut(s) | 777, 855, 1537 |
| Mox20I | TGGCCA | 1 cut(s) | 1767 |
| MroNI | GCCGGC | 1 cut(s) | 991 |
| MroXI | GAANNNNTTC | 1 cut(s) | 477 |
| MscI | TGGCCA | 1 cut(s) | 1767 |
| MseI | TTAA | 6 cut(s) | 228, 525, 573, 654, 915, 1314 |
| MslI | CAYNNNNRTG | 1 cut(s) | 47 |
| Msp20I | TGGCCA | 1 cut(s) | 1767 |
| MspA1I | CMGCKG | 1 cut(s) | 674 |
| MspI | CCGG | 2 cut(s) | 923, 992 |
| MspR9I | CCNGG | 4 cut(s) | 239, 877, 896, 1384 |
| MunI | CAATTG | 2 cut(s) | 246, 770 |
| MvaI | CCWGG | 4 cut(s) | 239, 877, 896, 1384 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 587, 602, 677, 1613, 1764 |
| NaeI | GCCGGC | 1 cut(s) | 993 |
| NdeI | CATATG | 1 cut(s) | 1021 |
| NdeII | GATC | 9 cut(s) | 95, 418, 438, 520, 898, 974, 1102, 1295, 1411 |
| NgoMIV | GCCGGC | 1 cut(s) | 991 |
| NlaIII | CATG | 9 cut(s) | 223, 299, 609, 905, 935, 1523, 1625, 1709, 1811 |
| NlaIV | GGNNCC | 5 cut(s) | 64, 97, 420, 679, 982 |
| NmuCI | GTSAC | 3 cut(s) | 269, 757, 1632 |
| NspI | RCATGY | 1 cut(s) | 299 |
| NspV | TTCGAA | 1 cut(s) | 1611 |
| PceI | AGGCCT | 2 cut(s) | 1003, 1792 |
| PdiI | GCCGGC | 1 cut(s) | 993 |
| PdmI | GAANNNNTTC | 1 cut(s) | 477 |
| PfeI | GAWTC | 2 cut(s) | 39, 1804 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 725, 895 |
| PfoI | TCCNGGA | 1 cut(s) | 875 |
| PkrI | GCNGC | 4 cut(s) | 427, 673, 694, 1345 |
| PleI | GAGTC | 2 cut(s) | 31, 1065 |
| PpsI | GAGTC | 2 cut(s) | 31, 1065 |
| PpuMI | RGGWCCY | 1 cut(s) | 63 |
| PsiI | TTATAA | 1 cut(s) | 543 |
| Psp5II | RGGWCCY | 1 cut(s) | 63 |
| Psp6I | CCWGG | 4 cut(s) | 237, 875, 894, 1382 |
| PspGI | CCWGG | 4 cut(s) | 237, 875, 894, 1382 |
| PspN4I | GGNNCC | 5 cut(s) | 64, 97, 420, 679, 982 |
| PspPI | GGNCC | 3 cut(s) | 63, 1494, 1568 |
| PspPPI | RGGWCCY | 1 cut(s) | 63 |
| PstI | CTGCAG | 1 cut(s) | 427 |
| PsuI | RGATCY | 3 cut(s) | 95, 418, 974 |
| PvuII | CAGCTG | 1 cut(s) | 674 |
| RsaI | GTAC | 5 cut(s) | 107, 199, 234, 970, 1797 |
| RsaNI | GTAC | 5 cut(s) | 106, 198, 233, 969, 1796 |
| RseI | CAYNNNNRTG | 1 cut(s) | 47 |
| SaqAI | TTAA | 6 cut(s) | 228, 525, 573, 654, 915, 1314 |
| SatI | GCNGC | 4 cut(s) | 426, 672, 693, 1344 |
| Sau3AI | GATC | 9 cut(s) | 95, 418, 438, 520, 898, 974, 1102, 1295, 1411 |
| Sau96I | GGNCC | 3 cut(s) | 63, 1494, 1568 |
| SchI | GAGTC | 2 cut(s) | 32, 1066 |
| ScrFI | CCNGG | 4 cut(s) | 239, 877, 896, 1384 |
| SduI | GDGCHC | 2 cut(s) | 888, 1288 |
| SfaNI | GCATC | 3 cut(s) | 544, 1004, 1016 |
| SfcI | CTRYAG | 3 cut(s) | 423, 849, 1072 |
| SfuI | TTCGAA | 1 cut(s) | 1611 |
| SinI | GGWCC | 3 cut(s) | 63, 1494, 1568 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 47 |
| SmlI | CTYRAG | 3 cut(s) | 597, 985, 1302 |
| SmoI | CTYRAG | 3 cut(s) | 597, 985, 1302 |
| SseBI | AGGCCT | 2 cut(s) | 1003, 1792 |
| SsiI | CCGC | 1 cut(s) | 693 |
| SspMI | CTAG | 5 cut(s) | 144, 149, 999, 1044, 1676 |
| StuI | AGGCCT | 2 cut(s) | 1003, 1792 |
| StyD4I | CCNGG | 4 cut(s) | 237, 875, 894, 1382 |
| StyI | CCWWGG | 1 cut(s) | 1288 |
| TaaI | ACNGT | 4 cut(s) | 197, 328, 850, 950 |
| TaiI | ACGT | 2 cut(s) | 1186, 1576 |
| TaqI | TCGA | 6 cut(s) | 286, 1119, 1143, 1294, 1323, 1611 |
| TatI | WGTACW | 2 cut(s) | 197, 1795 |
| TauI | GCSGC | 1 cut(s) | 695 |
| TfiI | GAWTC | 2 cut(s) | 39, 1804 |
| Tru1I | TTAA | 6 cut(s) | 228, 525, 573, 654, 915, 1314 |
| Tru9I | TTAA | 6 cut(s) | 228, 525, 573, 654, 915, 1314 |
| TscAI | CASTG | 4 cut(s) | 49, 378, 1375, 1777 |
| TseFI | GTSAC | 3 cut(s) | 269, 757, 1632 |
| TseI | GCWGC | 3 cut(s) | 425, 671, 1343 |
| Tsp45I | GTSAC | 3 cut(s) | 269, 757, 1632 |
| TspDTI | ATGAA | 5 cut(s) | 414, 474, 822, 1520, 1638 |
| TspGWI | ACGGA | 1 cut(s) | 1620 |
| TspRI | CASTG | 4 cut(s) | 49, 378, 1375, 1777 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 725, 895 |
| VpaK11BI | GGWCC | 3 cut(s) | 63, 1494, 1568 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 554, 1532 |
| XapI | RAATTY | 5 cut(s) | 133, 569, 610, 918, 1625 |
| XbaI | TCTAGA | 1 cut(s) | 143 |
| XceI | RCATGY | 1 cut(s) | 299 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 671 |
| XmnI | GAANNNNTTC | 1 cut(s) | 477 |
| XspI | CTAG | 5 cut(s) | 144, 149, 999, 1044, 1676 |