Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003638

Physical Location & Seq

Genomic Coordinates Reverse (-)

34965653 .. 34966540

Gene Structure 888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31879

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCACATAATGGTATCAATAACATCAATGGCACTGCCATGTACGGCGAGGGAAACTCGGAATTGAGCTGCGTATTTATGGAGGGCAATAATATGGGCCTGAAGAAAGGTCCATGGACGGCGGTGGAGGATCAAATTCCGATGGAGTACGTGAGCAAACAGGGCGAAGGGAACTGGAATTCGGTGCAATGGAATTCCGGGCTCAAGCGTTGCGGCAAGAGTTGCAGGCTCCGGTGGTGGGCTAATCATCTCCGCCCTAATTTGAAGAAAGGTGCATTCACACCCGAGGAAGAGAGACTCATTCTTGAACTCCACGCCAAATACGGCAACATGCAAATGGGCACGCATGGCCTCTCAGATAATGAAATTAAAAATTACTGGAACACAAGGGTGAAGAAGCGACTACGCAAAGGTCTTTCACTATATCCTCATGACATTAACCCATCCAAACGAGTATGTCAGTCACATTCTCATTCCCAACAAAACGCAATAAGCATTCCCACTGGAGTAACCCAACTTTCAACCACCACAGTACCACAGACTGACACTAGTTTTAGCTTCCAATTACAAGCCTCATCATCCCAAAACAAAACCCAACTCCCTACCCTCCCCTCCCAAAACCATCCCAACTCCACTCTCAATATATCATTCCCTCCTTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

221

Amino Acids

24.78

Weight (kDa)

9.43

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	36 - 79	2e-09	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	39 - 99	3.4e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	90 - 129	1.6e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26930
fragaria_vesca	FvH4_3g22960 FvH4_3g22960 FvH4_3g22960 FvH4_3g22960 FvH4_3g22970 FvH4_3g22970
malus_domestica	MD05G1136100.v1.1 MD11G1215600.v1.1 MD11G1216000.v1.1
prunus_persica	Prupe.4G215500_v2.0.a1 Prupe.4G215500_v2.0.a1 Prupe.4G215600_v2.0.a1
pyrus_communis	pycom11g19020
rosa_chinensis	RchiOBHm_Chr5g0040211 RchiOBHm_Chr5g0040281
rosa_laevigata	RLG00000033968 RLG00000033970
rosa_multiflora	Rmu_co8296705.1_g000001 Rmu_co8344811.1_g000001 Rmu_sc0002908.1_g000007 Rmu_sc0010162.1_g000003 Rmu_sc0014485.1_g000006
rosa_roxburghii	Rroxscaffold_1G00041020 Rroxscaffold_1G00041030
rosa_rugosa	Rorug05G0184400 Rorug05G0184500
rosa_samantha	Rh5AG271400 Rh5AG271500 Rh5BG274600 Rh5BG275400 Rh5CG307600 Rh5DG282900 Rh5DG283600
rosa_wichuraiana	Rw5G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	122, 213, 253
AclWI	GGATC	1 cut(s)	138
AcsI	RAATTY	3 cut(s)	135, 178, 193
AcuI	CTGAAG	1 cut(s)	122
AfaI	GTAC	3 cut(s)	44, 149, 534
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	3 cut(s)	265, 308, 522
AhlI	ACTAGT	1 cut(s)	548
AleI	CACNNNNGTG	1 cut(s)	389
AluBI	AGCT	2 cut(s)	69, 558
AluI	AGCT	2 cut(s)	69, 558
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	1 cut(s)	138
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	2 cut(s)	97, 349
ApeKI	GCWGC	1 cut(s)	69
ApoI	RAATTY	3 cut(s)	135, 178, 193
AspS9I	GGNCC	2 cut(s)	97, 110
AsuC2I	CCSGG	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	403
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	344
BaeI	ACNNNNGTAYC	2 cut(s)	516, 549
BanII	GRGCYC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	3 cut(s)	136, 451, 630
BceAI	ACGGC	3 cut(s)	61, 135, 340
BcnI	CCSGG	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	289
BcuI	ACTAGT	1 cut(s)	548
BfaI	CTAG	1 cut(s)	549
BisI	GCNGC	2 cut(s)	70, 214
BlsI	GCNGC	2 cut(s)	71, 215
Bme1390I	CCNGG	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	97, 110
BmiI	GGNNCC	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	199
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BpmI	CTGGAG	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	199
BsaAI	YACGTR	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	113, 285
BsaWI	WCCGGW	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	3 cut(s)	179, 383, 508
Bse3DI	GCAATG	1 cut(s)	194
BseDI	CCNNGG	2 cut(s)	113, 285
BseGI	GGATG	3 cut(s)	443, 578, 622
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	3 cut(s)	179, 383, 508
BseSI	GKGCMC	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	56
BshFI	GGCC	2 cut(s)	99, 351
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	2 cut(s)	198, 232
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	289
BsmI	GAATGC	2 cut(s)	275, 495
BsnI	GGCC	2 cut(s)	99, 351
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	2 cut(s)	204, 344
Bsp143I	GATC	1 cut(s)	130
Bsp19I	CCATGG	1 cut(s)	113
BspACI	CCGC	3 cut(s)	122, 213, 253
BspANI	GGCC	2 cut(s)	99, 351
BspCNI	CTCAG	1 cut(s)	368
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	230
BspPI	GGATC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	194
BsrI	ACTGG	3 cut(s)	179, 383, 508
BssECI	CCNNGG	2 cut(s)	113, 285
BssMI	GATC	1 cut(s)	130
BssT1I	CCWWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	532
Bst6I	CTCTTC	1 cut(s)	285
BstAPI	GCANNNNNTGC	1 cut(s)	222
BstBAI	YACGTR	1 cut(s)	151
BstC8I	GCNNGC	2 cut(s)	227, 344
BstDEI	CTNAG	1 cut(s)	355
BstDSI	CCRYGG	1 cut(s)	113
BstF5I	GGATG	3 cut(s)	443, 578, 622
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 222, 348
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	197
BstSLI	GKGCMC	1 cut(s)	344
BstV1I	GCAGC	1 cut(s)	56
BsuRI	GGCC	2 cut(s)	99, 351
BtgI	CCRYGG	1 cut(s)	113
BtsCI	GGATG	3 cut(s)	443, 578, 622
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	2 cut(s)	33, 501
Cac8I	GCNNGC	2 cut(s)	227, 344
CciI	TCATGA	1 cut(s)	430
Cfr13I	GGNCC	2 cut(s)	97, 110
Csp6I	GTAC	3 cut(s)	43, 148, 533
CviAII	CATG	5 cut(s)	40, 114, 331, 347, 431
CviJI	RGCY	8 cut(s)	69, 99, 202, 229, 242, 351, 558, 572
CviKI_1	RGCY	8 cut(s)	69, 99, 202, 229, 242, 351, 558, 572
CviQI	GTAC	3 cut(s)	43, 148, 533
DdeI	CTNAG	1 cut(s)	355
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	113
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	284
EcoRI	GAATTC	2 cut(s)	178, 193
EcoT14I	CCWWGG	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	5 cut(s)	43, 117, 334, 350, 434
FatI	CATG	5 cut(s)	39, 113, 330, 346, 430
Fnu4HI	GCNGC	2 cut(s)	70, 214
FokI	GGATG	3 cut(s)	430, 565, 609
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	2 cut(s)	70, 214
FspBI	CTAG	1 cut(s)	549
GluI	GCNGC	2 cut(s)	70, 214
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	2 cut(s)	99, 351
HapII	CCGG	2 cut(s)	198, 232
Hin1II	CATG	5 cut(s)	43, 117, 334, 350, 434
HinfI	GANTC	1 cut(s)	297
HpaII	CCGG	2 cut(s)	198, 232
HphI	GGTGA	1 cut(s)	403
Hpy188I	TCNGA	3 cut(s)	61, 141, 358
Hpy188III	TCNNGA	2 cut(s)	305, 431
HpyAV	CCTTC	2 cut(s)	161, 666
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	4 cut(s)	187, 225, 275, 334
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 222, 348
HpyF3I	CTNAG	1 cut(s)	355
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	5 cut(s)	43, 117, 334, 350, 434
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	234
LpnPI	CCDG	8 cut(s)	113, 146, 160, 211, 211, 245, 364, 489
Lsp1109I	GCAGC	1 cut(s)	56
MaeI	CTAG	1 cut(s)	549
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	2 cut(s)	462, 508
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	4 cut(s)	115, 277, 302, 406
MhlI	GDGCHC	2 cut(s)	204, 344
MluCI	AATT	8 cut(s)	62, 135, 178, 193, 259, 366, 373, 563
MlyI	GAGTC	1 cut(s)	291
MseI	TTAA	2 cut(s)	369, 438
MslI	CAYNNNNRTG	3 cut(s)	38, 335, 389
MspI	CCGG	2 cut(s)	198, 232
MspR9I	CCNGG	1 cut(s)	199
Mva1269I	GAATGC	2 cut(s)	275, 495
MwoI	GCNNNNNNNGC	3 cut(s)	162, 222, 348
NciI	CCSGG	1 cut(s)	199
NcoI	CCATGG	1 cut(s)	113
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	5 cut(s)	43, 117, 334, 350, 434
NlaIV	GGNNCC	1 cut(s)	230
NmuCI	GTSAC	1 cut(s)	462
NspI	RCATGY	1 cut(s)	334
OliI	CACNNNNGTG	1 cut(s)	389
PagI	TCATGA	1 cut(s)	430
PctI	GAATGC	2 cut(s)	275, 495
PkrI	GCNGC	2 cut(s)	71, 215
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
Ppu21I	YACGTR	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	230
PspPI	GGNCC	2 cut(s)	97, 110
RsaI	GTAC	3 cut(s)	44, 149, 534
RsaNI	GTAC	3 cut(s)	43, 148, 533
RseI	CAYNNNNRTG	3 cut(s)	38, 335, 389
SaqAI	TTAA	2 cut(s)	369, 438
SatI	GCNGC	2 cut(s)	70, 214
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	2 cut(s)	97, 110
SchI	GAGTC	1 cut(s)	291
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	2 cut(s)	204, 344
SetI	ASST	6 cut(s)	71, 112, 153, 274, 415, 560
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	3 cut(s)	38, 335, 389
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SpeI	ACTAGT	1 cut(s)	548
Sse9I	AATT	8 cut(s)	62, 135, 178, 193, 259, 366, 373, 563
SsiI	CCGC	3 cut(s)	122, 213, 253
SspMI	CTAG	1 cut(s)	549
StyD4I	CCNGG	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	1 cut(s)	153
TasI	AATT	8 cut(s)	62, 135, 178, 193, 259, 366, 373, 563
TauI	GCSGC	1 cut(s)	216
Tru1I	TTAA	2 cut(s)	369, 438
Tru9I	TTAA	2 cut(s)	369, 438
TscAI	CASTG	2 cut(s)	40, 508
TseFI	GTSAC	1 cut(s)	462
TseI	GCWGC	1 cut(s)	69
Tsp45I	GTSAC	1 cut(s)	462
TspDTI	ATGAA	1 cut(s)	378
TspRI	CASTG	2 cut(s)	40, 508
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	3 cut(s)	135, 178, 193
XceI	RCATGY	1 cut(s)	334
XspI	CTAG	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.