Rroxscaffold_1G00041020
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003638
Physical Location & Seq
Forward (+)
58798180 .. 58799029
850 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00041020.1

Sequence Viewer

Length: 630 bp
ATGACACACAGCGGTAACGGCATTAATGGCGGTGGTGCTGTTCTTAGCGGCGAGGGAAGGCCTTTGGAGACAAACGGCGGAATGGAGGGCAATAAAGGCCTAAAGAAAGGTCCCTGGACGGCGACGGAGGATCAAATATTGATGGACTACGTGAGGCAACACGGCGAAGGGAACTGGAATTCAGTGCAGCGAAACTCTGGTCTCAACCGTTGTGGCAAGAGTTGCAGGCTCCGATGGGCCAATCATCTCCGCCCTAATTTGAAGAAAGGTTCCTTCACACCAGAGGAAGAGAGGCTCATTCTTGAGCTTCATGCCAAATACGGCAATAAATGGGCACGCATGGCCTCTCAGCTACCCGGACGAACAGATAATGAAATAAAGAACTATTGGAACACAAGGGTGAAGAGACGACAACGTCAAGGCCTTCCTCTATATCCTCATGATATTAAACAATCCCAACAACAATCTCATTCCCAGTCACAACCAACCACTTTAACCATTCCCACAGGACTAACACAGTCCAGCACAAGCACCGGAATGCCACCCACAGGCCAAACTTTTTCCTTCCAAGTTCAAAATTCATCATCATCGCAGACTCATCAACTCCCTCTCATAGCCCCCACTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

209

Amino Acids

23.22

Weight (kDa)

9.95

Isoelectric Point (pI)

52.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 36 - 83 3.5e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 39 - 98 4.7e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 89 - 132 1.9e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 92 - 136 3.1e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 414
AciI CCGC 5 cut(s) 12, 30, 48, 78, 250
AclWI GGATC 1 cut(s) 138
AcsI RAATTY 2 cut(s) 178, 577
AfiI CCNNNNNNNGG 1 cut(s) 548
AgsI TTSAA 2 cut(s) 262, 575
AjnI CCWGG 1 cut(s) 113
AleI CACNNNNGTG 1 cut(s) 398
AluBI AGCT 2 cut(s) 307, 352
AluI AGCT 2 cut(s) 307, 352
Alw26I GTCTC 3 cut(s) 62, 206, 400
AlwI GGATC 1 cut(s) 138
AoxI GGCC 6 cut(s) 59, 97, 237, 342, 421, 550
ApeKI GCWGC 1 cut(s) 187
ApoI RAATTY 2 cut(s) 178, 577
ArsI GACNNNNNNTTYG 2 cut(s) 184, 216
AseI ATTAAT 1 cut(s) 24
AspS9I GGNCC 2 cut(s) 110, 237
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 1 cut(s) 412
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 337
BbvI GCAGC 1 cut(s) 199
BccI CCATC 2 cut(s) 136, 228
BceAI ACGGC 5 cut(s) 34, 91, 135, 178, 337
BciT130I CCWGG 1 cut(s) 115
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 3 cut(s) 62, 206, 400
BisI GCNGC 2 cut(s) 49, 188
BlsI GCNGC 2 cut(s) 50, 189
Bme1390I CCNGG 2 cut(s) 115, 357
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 110, 237
BmiI GGNNCC 3 cut(s) 112, 230, 271
BmrFI CCNGG 2 cut(s) 115, 357
BmrI ACTGGG 1 cut(s) 469
BmuI ACTGGG 1 cut(s) 469
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 357
BsaAI YACGTR 1 cut(s) 151
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 113
BsaWI WCCGGW 1 cut(s) 533
Bsc4I CCNNNNNNNGG 1 cut(s) 548
Bse1I ACTGG 2 cut(s) 179, 475
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 548
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 2 cut(s) 179, 475
BseSI GKGCMC 1 cut(s) 337
BseXI GCAGC 1 cut(s) 199
BsgI GTGCAG 1 cut(s) 206
BshFI GGCC 6 cut(s) 61, 99, 239, 344, 423, 552
BsiSI CCGG 2 cut(s) 357, 534
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 548
BsmAI GTCTC 3 cut(s) 62, 206, 400
BsmBI CGTCTC 1 cut(s) 400
BsmFI GGGAC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 543
BsnI GGCC 6 cut(s) 61, 99, 239, 344, 423, 552
Bso31I GGTCTC 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 5 cut(s) 12, 30, 48, 78, 250
BspANI GGCC 6 cut(s) 61, 99, 239, 344, 423, 552
BspCNI CTCAG 1 cut(s) 361
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 3 cut(s) 112, 230, 271
BspPI GGATC 1 cut(s) 138
BspTNI GGTCTC 1 cut(s) 206
BsrI ACTGG 2 cut(s) 179, 475
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 115
Bst4CI ACNGT 2 cut(s) 209, 519
Bst6I CTCTTC 2 cut(s) 282, 398
BstAPI GCANNNNNTGC 1 cut(s) 222
BstBAI YACGTR 1 cut(s) 151
BstC8I GCNNGC 2 cut(s) 227, 337
BstDEI CTNAG 2 cut(s) 44, 348
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 3 cut(s) 62, 206, 400
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 5 cut(s) 18, 27, 96, 222, 341
BstNI CCWGG 1 cut(s) 115
BstSCI CCNGG 2 cut(s) 113, 355
BstSLI GKGCMC 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 199
BsuRI GGCC 6 cut(s) 61, 99, 239, 344, 423, 552
BtgZI GCGATG 1 cut(s) 573
BtsIMutI CAGTG 2 cut(s) 189, 621
Cac8I GCNNGC 2 cut(s) 227, 337
CciI TCATGA 1 cut(s) 439
Cfr13I GGNCC 2 cut(s) 110, 237
CspCI CAANNNNNGTGG 2 cut(s) 193, 228
CviAII CATG 3 cut(s) 311, 340, 440
DdeI CTNAG 2 cut(s) 44, 348
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
DrdI GACNNNNNNGTC 1 cut(s) 414
DseDI GACNNNNNNGTC 1 cut(s) 414
Eam1104I CTCTTC 2 cut(s) 282, 398
EarI CTCTTC 2 cut(s) 282, 398
EciI GGCGGA 2 cut(s) 93, 239
Eco147I AGGCCT 3 cut(s) 61, 99, 423
Eco31I GGTCTC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 110
EcoRI GAATTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 113
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 3 cut(s) 314, 343, 443
FaiI YATR 5 cut(s) 312, 341, 433, 441, 614
FaqI GGGAC 1 cut(s) 96
FatI CATG 3 cut(s) 310, 339, 439
Fnu4HI GCNGC 2 cut(s) 49, 188
Fsp4HI GCNGC 2 cut(s) 49, 188
GluI GCNGC 2 cut(s) 49, 188
HaeIII GGCC 6 cut(s) 61, 99, 239, 344, 423, 552
HapII CCGG 2 cut(s) 357, 534
Hin1II CATG 3 cut(s) 314, 343, 443
HinfI GANTC 1 cut(s) 595
HpaII CCGG 2 cut(s) 357, 534
HphI GGTGA 1 cut(s) 412
Hpy188I TCNGA 1 cut(s) 233
Hpy188III TCNNGA 2 cut(s) 302, 440
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 5 cut(s) 51, 161, 283, 434, 574
HpyCH4III ACNGT 2 cut(s) 209, 519
HpyCH4IV ACGT 2 cut(s) 150, 415
HpyCH4V TGCA 2 cut(s) 187, 225
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 27, 96, 222, 341
HpyF3I CTNAG 2 cut(s) 44, 348
HpySE526I ACGT 2 cut(s) 150, 415
Hsp92II CATG 3 cut(s) 314, 343, 443
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 234
Lsp1109I GCAGC 1 cut(s) 199
MaeII ACGT 2 cut(s) 150, 415
MaeIII GTNAC 2 cut(s) 14, 477
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 3 cut(s) 274, 299, 415
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 3 cut(s) 178, 256, 577
MlyI GAGTC 1 cut(s) 589
MseI TTAA 3 cut(s) 24, 447, 494
MslI CAYNNNNRTG 2 cut(s) 398, 536
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 2 cut(s) 357, 534
MspR9I CCNGG 2 cut(s) 115, 357
Mva1269I GAATGC 1 cut(s) 543
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 5 cut(s) 18, 27, 96, 222, 341
NciI CCSGG 1 cut(s) 357
NdeII GATC 1 cut(s) 130
NlaIII CATG 3 cut(s) 314, 343, 443
NlaIV GGNNCC 3 cut(s) 112, 230, 271
NmuCI GTSAC 1 cut(s) 477
OliI CACNNNNGTG 1 cut(s) 398
PagI TCATGA 1 cut(s) 439
PceI AGGCCT 3 cut(s) 61, 99, 423
PctI GAATGC 1 cut(s) 543
PflFI GACNNNGTC 1 cut(s) 414
PkrI GCNGC 2 cut(s) 50, 189
PleI GAGTC 1 cut(s) 589
PpsI GAGTC 1 cut(s) 589
Ppu21I YACGTR 1 cut(s) 151
PpuMI RGGWCCY 1 cut(s) 110
PshBI ATTAAT 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 3 cut(s) 112, 230, 271
PspPI GGNCC 2 cut(s) 110, 237
PspPPI RGGWCCY 1 cut(s) 110
PsyI GACNNNGTC 1 cut(s) 414
RseI CAYNNNNRTG 2 cut(s) 398, 536
SaqAI TTAA 3 cut(s) 24, 447, 494
SatI GCNGC 2 cut(s) 49, 188
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 2 cut(s) 110, 237
SchI GAGTC 1 cut(s) 589
ScrFI CCNGG 2 cut(s) 115, 357
SduI GDGCHC 1 cut(s) 337
SetI ASST 6 cut(s) 112, 153, 271, 309, 354, 418
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 2 cut(s) 398, 536
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 3 cut(s) 178, 256, 577
SseBI AGGCCT 3 cut(s) 61, 99, 423
SsiI CCGC 5 cut(s) 12, 30, 48, 78, 250
SspI AATATT 1 cut(s) 138
StuI AGGCCT 3 cut(s) 61, 99, 423
StyD4I CCNGG 2 cut(s) 113, 355
TaaI ACNGT 2 cut(s) 209, 519
TaiI ACGT 2 cut(s) 153, 418
TasI AATT 3 cut(s) 178, 256, 577
TauI GCSGC 1 cut(s) 51
Tru1I TTAA 3 cut(s) 24, 447, 494
Tru9I TTAA 3 cut(s) 24, 447, 494
TscAI CASTG 2 cut(s) 189, 628
TseFI GTSAC 1 cut(s) 477
TseI GCWGC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 477
TspDTI ATGAA 3 cut(s) 299, 387, 570
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 2 cut(s) 189, 628
Tth111I GACNNNGTC 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 110
VspI ATTAAT 1 cut(s) 24
XapI RAATTY 2 cut(s) 178, 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.