Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8344811.1

Orthogroup ID

OG0003638

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1021

Gene Structure 1021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8344811.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ctacccggacgaacagataatgaaataaagaattattggaacacaagggtgaagaggcgacaacgtcaaggcctacctctatatcctcatgatattaaacaatcccaacaacaatctcattcccagtcacaaccaaccactttaaccattcccacaggactaacacagtccagcacaagcaccggaatgccacccacaggccaaactttttccttccaagttcaaaattcatcatcatcgcagactcaccaactccctctcatagcccctactgacccatatcactctgtcccctcctctcccaaatccgccctcagtcattcccttcctctaatatttgatcaccccaccgactcttccttcacattccaccgccccactcccatcctcggagccccattgcggtacaaaaggcaccccgacagccgtgacatctcccctccagtttccccaagcctacaacgaagcacctctattttacgagccagctccatgcccgacatatcttacaatcagcatattgcagcaggaaacatgtccatgcctgacatgtcctcttttcagtttcagccaacacgtcatttcaatggttcgttgccaccattgccgcgttccaccagcgtcccgtttgattttggggacagtaccaggtcactttattcggtgaagtcatcagagcttccttcaagccgagtatcccaaacacagtcacagtctgatcagatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

242

Amino Acids

26.82

Weight (kDa)

9.98

Isoelectric Point (pI)

89.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26930
fragaria_vesca	FvH4_3g22960 FvH4_3g22960 FvH4_3g22960 FvH4_3g22960 FvH4_3g22970 FvH4_3g22970
malus_domestica	MD05G1136100.v1.1 MD11G1215600.v1.1 MD11G1216000.v1.1
prunus_persica	Prupe.4G215500_v2.0.a1 Prupe.4G215500_v2.0.a1 Prupe.4G215600_v2.0.a1
pyrus_communis	pycom11g19020
rosa_chinensis	RchiOBHm_Chr5g0040211 RchiOBHm_Chr5g0040281
rosa_laevigata	RLG00000033968 RLG00000033970
rosa_multiflora	Rmu_co8296705.1_g000001 Rmu_co8344811.1_g000001 Rmu_sc0002908.1_g000007 Rmu_sc0010162.1_g000003 Rmu_sc0014485.1_g000006
rosa_roxburghii	Rroxscaffold_1G00041020 Rroxscaffold_1G00041030
rosa_rugosa	Rorug05G0184400 Rorug05G0184500
rosa_samantha	Rh5AG271400 Rh5AG271500 Rh5BG274600 Rh5BG275400 Rh5CG307600 Rh5DG282900 Rh5DG283600
rosa_wichuraiana	Rw5G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	414
AccII	CGCG	1 cut(s)	610
AciI	CCGC	4 cut(s)	309, 373, 403, 608
AcsI	RAATTY	1 cut(s)	226
AfaI	GTAC	2 cut(s)	407, 646
AfiI	CCNNNNNNNGG	3 cut(s)	197, 389, 402
AflIII	ACRYGT	3 cut(s)	534, 549, 575
AgsI	TTSAA	3 cut(s)	224, 586, 687
AjiI	CACGTC	1 cut(s)	578
AjnI	CCWGG	1 cut(s)	647
AleI	CACNNNNGTG	1 cut(s)	47
AluBI	AGCT	2 cut(s)	489, 679
AluI	AGCT	2 cut(s)	489, 679
AoxI	GGCC	2 cut(s)	70, 199
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	1 cut(s)	226
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	4 cut(s)	61, 239, 335, 676
BanI	GGYRCC	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	397
BbvI	GCAGC	1 cut(s)	536
BccI	CCATC	1 cut(s)	392
BceAI	ACGGC	1 cut(s)	411
BciT130I	CCWGG	1 cut(s)	649
BciVI	GTATCC	1 cut(s)	706
BclI	TGATCA	2 cut(s)	340, 718
BcnI	CCSGG	1 cut(s)	6
BfuI	GTATCC	1 cut(s)	706
BisI	GCNGC	2 cut(s)	525, 608
BlsI	GCNGC	2 cut(s)	526, 609
Bme1390I	CCNGG	2 cut(s)	6, 649
BmgBI	CACGTC	1 cut(s)	578
BmiI	GGNNCC	2 cut(s)	394, 416
BmrFI	CCNGG	2 cut(s)	6, 649
BmrI	ACTGGG	1 cut(s)	118
BmuI	ACTGGG	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	388
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 389, 402
Bse1I	ACTGG	2 cut(s)	124, 443
Bse3DI	GCAATG	2 cut(s)	398, 602
BseBI	CCWGG	1 cut(s)	649
BseDI	CCNNGG	1 cut(s)	388
BseGI	GGATG	1 cut(s)	384
BseLI	CCNNNNNNNGG	3 cut(s)	197, 389, 402
BseMI	GCAATG	2 cut(s)	398, 602
BseMII	CTCAG	1 cut(s)	328
BseNI	ACTGG	2 cut(s)	124, 443
BseRI	GAGGAG	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	536
Bsh1236I	CGCG	1 cut(s)	610
BshFI	GGCC	2 cut(s)	72, 201
BshNI	GGYRCC	1 cut(s)	414
BsiSI	CCGG	2 cut(s)	6, 183
BslFI	GGGAC	3 cut(s)	275, 608, 653
BslI	CCNNNNNNNGG	3 cut(s)	197, 389, 402
BsmFI	GGGAC	3 cut(s)	275, 608, 653
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	2 cut(s)	72, 201
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	340, 718
BspACI	CCGC	4 cut(s)	309, 373, 403, 608
BspANI	GGCC	2 cut(s)	72, 201
BspCNI	CTCAG	1 cut(s)	327
BspFNI	CGCG	1 cut(s)	610
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	394, 416
BspT107I	GGYRCC	1 cut(s)	414
BsrDI	GCAATG	2 cut(s)	398, 602
BsrI	ACTGG	2 cut(s)	124, 443
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	2 cut(s)	340, 718
Bst2UI	CCWGG	1 cut(s)	649
Bst4CI	ACNGT	4 cut(s)	168, 644, 708, 714
Bst6I	CTCTTC	2 cut(s)	47, 361
BstC8I	GCNNGC	1 cut(s)	487
BstDEI	CTNAG	1 cut(s)	314
BstF5I	GGATG	1 cut(s)	384
BstFNI	CGCG	1 cut(s)	610
BstKTI	GATC	3 cut(s)	343, 721, 726
BstMBI	GATC	2 cut(s)	340, 718
BstMWI	GCNNNNNNNGC	1 cut(s)	604
BstNI	CCWGG	1 cut(s)	649
BstNSI	RCATGY	2 cut(s)	538, 553
BstSCI	CCNGG	2 cut(s)	4, 647
BstUI	CGCG	1 cut(s)	610
BstV1I	GCAGC	1 cut(s)	536
BsuI	GTATCC	1 cut(s)	706
BsuRI	GGCC	2 cut(s)	72, 201
BtgZI	GCGATG	1 cut(s)	222
BtrI	CACGTC	1 cut(s)	578
BtsCI	GGATG	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	487
CciI	TCATGA	1 cut(s)	88
CseI	GACGC	1 cut(s)	610
CsiI	ACCWGGT	1 cut(s)	647
Csp6I	GTAC	2 cut(s)	406, 645
CviAII	CATG	5 cut(s)	89, 493, 535, 541, 550
CviQI	GTAC	2 cut(s)	406, 645
DdeI	CTNAG	1 cut(s)	314
DpnI	GATC	3 cut(s)	342, 720, 725
DpnII	GATC	2 cut(s)	340, 718
Eam1104I	CTCTTC	2 cut(s)	47, 361
EarI	CTCTTC	2 cut(s)	47, 361
EciI	GGCGGA	1 cut(s)	298
Eco147I	AGGCCT	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	647
EcoT38I	GRGCYC	1 cut(s)	397
FaeI	CATG	5 cut(s)	92, 496, 538, 544, 553
FaqI	GGGAC	3 cut(s)	275, 608, 653
FatI	CATG	5 cut(s)	88, 492, 534, 540, 549
FbaI	TGATCA	2 cut(s)	340, 718
Fnu4HI	GCNGC	2 cut(s)	525, 608
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	2 cut(s)	525, 608
GluI	GCNGC	2 cut(s)	525, 608
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	2 cut(s)	72, 201
HapII	CCGG	2 cut(s)	6, 183
HgaI	GACGC	1 cut(s)	610
Hin1II	CATG	5 cut(s)	92, 496, 538, 544, 553
HinfI	GANTC	2 cut(s)	244, 353
HpaII	CCGG	2 cut(s)	6, 183
HphI	GGTGA	4 cut(s)	61, 239, 335, 676
Hpy188I	TCNGA	4 cut(s)	392, 676, 718, 723
Hpy188III	TCNNGA	1 cut(s)	89
HpyAV	CCTTC	4 cut(s)	223, 335, 370, 693
HpyCH4III	ACNGT	4 cut(s)	168, 644, 708, 714
HpyCH4IV	ACGT	2 cut(s)	64, 577
HpyCH4V	TGCA	1 cut(s)	524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	604
HpyF3I	CTNAG	1 cut(s)	314
HpySE526I	ACGT	2 cut(s)	64, 577
Hsp92II	CATG	5 cut(s)	92, 496, 538, 544, 553
Ksp22I	TGATCA	2 cut(s)	340, 718
Kzo9I	GATC	2 cut(s)	340, 718
LmnI	GCTCC	2 cut(s)	392, 494
Lsp1109I	GCAGC	1 cut(s)	536
MabI	ACCWGGT	1 cut(s)	647
MaeII	ACGT	2 cut(s)	64, 577
MaeIII	GTNAC	4 cut(s)	126, 428, 651, 708
MalI	GATC	3 cut(s)	342, 720, 725
MboI	GATC	2 cut(s)	340, 718
MboII	GAAGA	2 cut(s)	64, 348
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	2 cut(s)	31, 226
MlyI	GAGTC	2 cut(s)	238, 347
MseI	TTAA	2 cut(s)	96, 143
MslI	CAYNNNNRTG	4 cut(s)	47, 185, 539, 585
MspI	CCGG	2 cut(s)	6, 183
MspR9I	CCNGG	2 cut(s)	6, 649
Mva1269I	GAATGC	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	649
MvnI	CGCG	1 cut(s)	610
MwoI	GCNNNNNNNGC	1 cut(s)	604
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	340, 718
NlaIII	CATG	5 cut(s)	92, 496, 538, 544, 553
NlaIV	GGNNCC	2 cut(s)	394, 416
NmeAIII	GCCGAG	1 cut(s)	716
NmuCI	GTSAC	4 cut(s)	126, 428, 651, 708
NspI	RCATGY	2 cut(s)	538, 553
OliI	CACNNNNGTG	1 cut(s)	47
PagI	TCATGA	1 cut(s)	88
PceI	AGGCCT	1 cut(s)	72
PciI	ACATGT	2 cut(s)	534, 549
PctI	GAATGC	1 cut(s)	192
PflFI	GACNNNGTC	1 cut(s)	63
PkrI	GCNGC	2 cut(s)	526, 609
PleI	GAGTC	2 cut(s)	238, 347
PpsI	GAGTC	2 cut(s)	238, 347
PscI	ACATGT	2 cut(s)	534, 549
Psp6I	CCWGG	1 cut(s)	647
PspGI	CCWGG	1 cut(s)	647
PspN4I	GGNNCC	2 cut(s)	394, 416
PsyI	GACNNNGTC	1 cut(s)	63
RsaI	GTAC	2 cut(s)	407, 646
RsaNI	GTAC	2 cut(s)	406, 645
RseI	CAYNNNNRTG	4 cut(s)	47, 185, 539, 585
SaqAI	TTAA	2 cut(s)	96, 143
SatI	GCNGC	2 cut(s)	525, 608
Sau3AI	GATC	2 cut(s)	340, 718
SchI	GAGTC	2 cut(s)	238, 347
ScrFI	CCNGG	2 cut(s)	6, 649
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	7 cut(s)	67, 79, 473, 491, 580, 653, 681
SexAI	ACCWGGT	1 cut(s)	647
SmiMI	CAYNNNNRTG	4 cut(s)	47, 185, 539, 585
Sse9I	AATT	2 cut(s)	31, 226
SseBI	AGGCCT	1 cut(s)	72
SsiI	CCGC	4 cut(s)	309, 373, 403, 608
SspI	AATATT	1 cut(s)	336
StuI	AGGCCT	1 cut(s)	72
StyD4I	CCNGG	2 cut(s)	4, 647
TaaI	ACNGT	4 cut(s)	168, 644, 708, 714
TaiI	ACGT	2 cut(s)	67, 580
TasI	AATT	2 cut(s)	31, 226
TauI	GCSGC	1 cut(s)	610
Tru1I	TTAA	2 cut(s)	96, 143
Tru9I	TTAA	2 cut(s)	96, 143
TseFI	GTSAC	4 cut(s)	126, 428, 651, 708
TseI	GCWGC	1 cut(s)	524
Tsp45I	GTSAC	4 cut(s)	126, 428, 651, 708
TspDTI	ATGAA	2 cut(s)	36, 219
Tth111I	GACNNNGTC	1 cut(s)	63
XapI	RAATTY	1 cut(s)	226
XceI	RCATGY	2 cut(s)	538, 553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.