Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014485.1

Orthogroup ID

OG0003638

Physical Location & Seq

Genomic Coordinates Reverse (-)

9577 .. 11424

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014485.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atgtacagcttaaagaaattgagattgctttggcttgtggttttttatattgacttggcggtcatcatcatcatcatcatggcacataatggtatcaatgacatcaatggcactgccatgtacggcgagggaaacccctcggaattgagctgcgtatttatggggggcaataatatgggcctgaggaaaggtccatggacggcggtggaggatcgaattctgatggagtacgtgagcaaacagggcgaagggaactggaattcggtgcaatggaattccgggctcaagcgttgcggcaagagttgcaggctccggtgggctaatcatctccgccctaatttgaagaaaggtgcattcacacccgaggaagagagactcattcttgaactccacgccaaatacggcaacaaatgggcacgcatggcctctcagaatttgcatctaatacagtgcagcaagctaaagaaggctagattgtggttactcgagttgataaaacgggatatctctatcaaaaagctgaagatgccaattaagttcactgccaaagcactgggactgcaggatgtaccggggggaggggggggtttcctagtttcaaagcaaactcctctacaggttatggcctgtagttcaaaaaagaaaagaggacgtccacttggggcacgaaataaaaatccttcaaaatcttcaaaggtttctgcagaagatgttctaagtgttctttattcggggaaccctcctagccgtaacccgaagggcaaggagaaagtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

258

Amino Acids

28.86

Weight (kDa)

10.13

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26930
fragaria_vesca	FvH4_3g22960 FvH4_3g22960 FvH4_3g22960 FvH4_3g22960 FvH4_3g22970 FvH4_3g22970
malus_domestica	MD05G1136100.v1.1 MD11G1215600.v1.1 MD11G1216000.v1.1
prunus_persica	Prupe.4G215500_v2.0.a1 Prupe.4G215500_v2.0.a1 Prupe.4G215600_v2.0.a1
pyrus_communis	pycom11g19020
rosa_chinensis	RchiOBHm_Chr5g0040211 RchiOBHm_Chr5g0040281
rosa_laevigata	RLG00000033968 RLG00000033970
rosa_multiflora	Rmu_co8296705.1_g000001 Rmu_co8344811.1_g000001 Rmu_sc0002908.1_g000007 Rmu_sc0010162.1_g000003 Rmu_sc0014485.1_g000006
rosa_roxburghii	Rroxscaffold_1G00041020 Rroxscaffold_1G00041030
rosa_rugosa	Rorug05G0184400 Rorug05G0184500
rosa_samantha	Rh5AG271400 Rh5AG271500 Rh5BG274600 Rh5BG275400 Rh5CG307600 Rh5DG282900 Rh5DG283600
rosa_wichuraiana	Rw5G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AatII	GACGTC	1 cut(s)	655
AciI	CCGC	4 cut(s)	59, 203, 294, 331
AclWI	GGATC	1 cut(s)	219
AcsI	RAATTY	4 cut(s)	216, 259, 274, 433
AcuI	CTGAAG	1 cut(s)	542
AcyI	GRCGYC	1 cut(s)	652
AfaI	GTAC	4 cut(s)	5, 122, 230, 570
AfiI	CCNNNNNNNGG	1 cut(s)	578
AgsI	TTSAA	6 cut(s)	343, 386, 600, 636, 684, 693
AluBI	AGCT	4 cut(s)	9, 150, 460, 520
AluI	AGCT	4 cut(s)	9, 150, 460, 520
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	219
Ama87I	CYCGRG	2 cut(s)	362, 485
AoxI	GGCC	3 cut(s)	178, 423, 624
ApeKI	GCWGC	2 cut(s)	150, 453
ApoI	RAATTY	4 cut(s)	216, 259, 274, 433
Asp700I	GAANNNNTTC	1 cut(s)	711
AspS9I	GGNCC	2 cut(s)	178, 191
AsuC2I	CCSGG	2 cut(s)	280, 573
AvaI	CYCGRG	2 cut(s)	362, 485
AvaII	GGWCC	1 cut(s)	191
AxyI	CCTNAGG	1 cut(s)	182
BaeGI	GKGCMC	2 cut(s)	418, 667
BanII	GRGCYC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	137, 465
BccI	CCATC	1 cut(s)	217
BceAI	ACGGC	4 cut(s)	139, 216, 418, 732
BcnI	CCSGG	2 cut(s)	280, 573
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	3 cut(s)	471, 593, 744
BfmI	CTRYAG	4 cut(s)	560, 614, 628, 702
BisI	GCNGC	3 cut(s)	151, 295, 454
BlsI	GCNGC	3 cut(s)	152, 296, 455
Bme1390I	CCNGG	2 cut(s)	280, 573
Bme18I	GGWCC	1 cut(s)	191
BmeT110I	CYCGRG	2 cut(s)	362, 485
BmgT120I	GGNCC	2 cut(s)	178, 191
BmiI	GGNNCC	2 cut(s)	311, 737
BmrFI	CCNGG	2 cut(s)	280, 573
BmrI	ACTGGG	1 cut(s)	563
BmsI	GCATC	2 cut(s)	448, 516
BmuI	ACTGGG	1 cut(s)	563
BpuEI	CTTGAG	1 cut(s)	269
BpuMI	CCSGG	2 cut(s)	280, 573
BsaAI	YACGTR	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	652
BsaJI	CCNNGG	4 cut(s)	138, 194, 363, 572
BsaWI	WCCGGW	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
Bse1I	ACTGG	2 cut(s)	260, 558
Bse21I	CCTNAGG	1 cut(s)	182
Bse3DI	GCAATG	1 cut(s)	275
BseDI	CCNNGG	4 cut(s)	138, 194, 363, 572
BseGI	GGATG	1 cut(s)	571
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	2 cut(s)	173, 443
BseNI	ACTGG	2 cut(s)	260, 558
BseRI	GAGGAG	1 cut(s)	600
BseSI	GKGCMC	2 cut(s)	418, 667
BseXI	GCAGC	2 cut(s)	137, 465
BsgI	GTGCAG	1 cut(s)	472
BshFI	GGCC	3 cut(s)	180, 425, 626
BsiHKCI	CYCGRG	2 cut(s)	362, 485
BsiSI	CCGG	3 cut(s)	279, 313, 572
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	1 cut(s)	578
BsmAI	GTCTC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	570
BsmI	GAATGC	1 cut(s)	353
BsnI	GGCC	3 cut(s)	180, 425, 626
BsoBI	CYCGRG	2 cut(s)	362, 485
Bsp1286I	GDGCHC	3 cut(s)	285, 418, 667
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	211
Bsp19I	CCATGG	1 cut(s)	194
BspACI	CCGC	4 cut(s)	59, 203, 294, 331
BspANI	GGCC	3 cut(s)	180, 425, 626
BspCNI	CTCAG	2 cut(s)	174, 442
BspLI	GGNNCC	2 cut(s)	311, 737
BspMAI	CTGCAG	2 cut(s)	564, 706
BspPI	GGATC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	275
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	260, 558
BssECI	CCNNGG	4 cut(s)	138, 194, 363, 572
BssMI	GATC	1 cut(s)	211
BssNI	GRCGYC	1 cut(s)	652
BssT1I	CCWWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	450
Bst6I	CTCTTC	1 cut(s)	363
BstACI	GRCGYC	1 cut(s)	652
BstAPI	GCANNNNNTGC	1 cut(s)	303
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	232
BstC8I	GCNNGC	3 cut(s)	308, 418, 458
BstDEI	CTNAG	3 cut(s)	182, 429, 716
BstDSI	CCRYGG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	571
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	4 cut(s)	243, 303, 422, 526
BstSCI	CCNGG	2 cut(s)	278, 571
BstSFI	CTRYAG	4 cut(s)	560, 614, 628, 702
BstSLI	GKGCMC	2 cut(s)	418, 667
BstV1I	GCAGC	2 cut(s)	137, 465
BstXI	CCANNNNNNTGG	1 cut(s)	553
Bsu36I	CCTNAGG	1 cut(s)	182
BsuRI	GGCC	3 cut(s)	180, 425, 626
BtgI	CCRYGG	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	571
BtsI	GCAGTG	2 cut(s)	111, 540
BtsIMutI	CAGTG	4 cut(s)	111, 455, 540, 551
Cac8I	GCNNGC	3 cut(s)	308, 418, 458
Cfr13I	GGNCC	2 cut(s)	178, 191
Csp6I	GTAC	4 cut(s)	4, 121, 229, 569
CviAII	CATG	4 cut(s)	79, 118, 195, 421
CviQI	GTAC	4 cut(s)	4, 121, 229, 569
DdeI	CTNAG	3 cut(s)	182, 429, 716
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
EciI	GGCGGA	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	194
Eco24I	GRGCYC	1 cut(s)	285
Eco32I	GATATC	1 cut(s)	505
Eco47I	GGWCC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	542
Eco81I	CCTNAGG	1 cut(s)	182
Eco88I	CYCGRG	2 cut(s)	362, 485
EcoRI	GAATTC	3 cut(s)	216, 259, 274
EcoRV	GATATC	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	4 cut(s)	82, 121, 198, 424
FaiI	YATR	9 cut(s)	48, 80, 87, 119, 161, 176, 196, 422, 623
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	4 cut(s)	78, 117, 194, 420
Fnu4HI	GCNGC	3 cut(s)	151, 295, 454
FokI	GGATG	1 cut(s)	578
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	3 cut(s)	151, 295, 454
FspBI	CTAG	3 cut(s)	471, 593, 744
GluI	GCNGC	3 cut(s)	151, 295, 454
HaeIII	GGCC	3 cut(s)	180, 425, 626
HapII	CCGG	3 cut(s)	279, 313, 572
Hin1I	GRCGYC	1 cut(s)	652
Hin1II	CATG	4 cut(s)	82, 121, 198, 424
HinfI	GANTC	1 cut(s)	375
HpaII	CCGG	3 cut(s)	279, 313, 572
Hpy166II	GTNNAC	2 cut(s)	540, 656
Hpy188I	TCNGA	4 cut(s)	142, 222, 432, 776
Hpy188III	TCNNGA	1 cut(s)	383
Hpy8I	GTNNAC	2 cut(s)	540, 656
HpyAV	CCTTC	4 cut(s)	242, 460, 690, 751
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4IV	ACGT	2 cut(s)	231, 652
HpyCH4V	TGCA	7 cut(s)	268, 306, 353, 439, 453, 562, 704
HpyF10VI	GCNNNNNNNGC	4 cut(s)	243, 303, 422, 526
HpyF3I	CTNAG	3 cut(s)	182, 429, 716
HpySE526I	ACGT	2 cut(s)	231, 652
Hsp92I	GRCGYC	1 cut(s)	652
Hsp92II	CATG	4 cut(s)	82, 121, 198, 424
Kzo9I	GATC	1 cut(s)	211
LmnI	GCTCC	1 cut(s)	315
Lsp1109I	GCAGC	2 cut(s)	137, 465
LweI	GCATC	2 cut(s)	448, 516
MaeI	CTAG	3 cut(s)	471, 593, 744
MaeII	ACGT	2 cut(s)	231, 652
MaeIII	GTNAC	2 cut(s)	480, 749
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	5 cut(s)	355, 380, 535, 681, 719
MhlI	GDGCHC	3 cut(s)	285, 418, 667
MluCI	AATT	8 cut(s)	17, 143, 216, 259, 274, 337, 433, 531
MlyI	GAGTC	1 cut(s)	369
MroXI	GAANNNNTTC	1 cut(s)	711
MseI	TTAA	2 cut(s)	11, 534
MslI	CAYNNNNRTG	2 cut(s)	77, 116
MspI	CCGG	3 cut(s)	279, 313, 572
MspR9I	CCNGG	2 cut(s)	280, 573
Mva1269I	GAATGC	1 cut(s)	353
MwoI	GCNNNNNNNGC	4 cut(s)	243, 303, 422, 526
NciI	CCSGG	2 cut(s)	280, 573
NcoI	CCATGG	1 cut(s)	194
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	4 cut(s)	82, 121, 198, 424
NlaIV	GGNNCC	2 cut(s)	311, 737
PaeR7I	CTCGAG	1 cut(s)	485
PctI	GAATGC	1 cut(s)	353
PdmI	GAANNNNTTC	1 cut(s)	711
PkrI	GCNGC	3 cut(s)	152, 296, 455
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
Ppu21I	YACGTR	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	311, 737
PspPI	GGNCC	2 cut(s)	178, 191
PspXI	VCTCGAGB	1 cut(s)	485
PstI	CTGCAG	2 cut(s)	564, 706
RsaI	GTAC	4 cut(s)	5, 122, 230, 570
RsaNI	GTAC	4 cut(s)	4, 121, 229, 569
RseI	CAYNNNNRTG	2 cut(s)	77, 116
SaqAI	TTAA	2 cut(s)	11, 534
SatI	GCNGC	3 cut(s)	151, 295, 454
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	2 cut(s)	178, 191
SchI	GAGTC	1 cut(s)	369
ScrFI	CCNGG	2 cut(s)	280, 573
SduI	GDGCHC	3 cut(s)	285, 418, 667
SfaNI	GCATC	2 cut(s)	448, 516
SfcI	CTRYAG	4 cut(s)	560, 614, 628, 702
Sfr274I	CTCGAG	1 cut(s)	485
SinI	GGWCC	1 cut(s)	191
SlaI	CTCGAG	1 cut(s)	485
SmiMI	CAYNNNNRTG	2 cut(s)	77, 116
SmlI	CTYRAG	2 cut(s)	284, 485
SmoI	CTYRAG	2 cut(s)	284, 485
Sse9I	AATT	8 cut(s)	17, 143, 216, 259, 274, 337, 433, 531
SsiI	CCGC	4 cut(s)	59, 203, 294, 331
SspMI	CTAG	3 cut(s)	471, 593, 744
StyD4I	CCNGG	2 cut(s)	278, 571
StyI	CCWWGG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	450
TaiI	ACGT	2 cut(s)	234, 655
TaqI	TCGA	2 cut(s)	214, 486
TasI	AATT	8 cut(s)	17, 143, 216, 259, 274, 337, 433, 531
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	297
Tru1I	TTAA	2 cut(s)	11, 534
Tru9I	TTAA	2 cut(s)	11, 534
TscAI	CASTG	4 cut(s)	118, 455, 547, 558
TseI	GCWGC	2 cut(s)	150, 453
TspRI	CASTG	4 cut(s)	118, 455, 547, 558
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	4 cut(s)	216, 259, 274, 433
XhoI	CTCGAG	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	711
XspI	CTAG	3 cut(s)	471, 593, 744
ZraI	GACGTC	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.